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Inflammatory response time course, HUVEC (Wada et al., 2009)

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Results for CUACAGU

Z-value: 0.10

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miRNA associated with seed CUACAGU

NamemiRBASE accession
hsa-miR-139-5p
MIMAT0000250

Activity profile of CUACAGU motif

Sorted Z-values of CUACAGU motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr12_+_20522179 0.14 ENST00000359062.3
PDE3A
phosphodiesterase 3A, cGMP-inhibited
chr1_+_61547894 0.09 ENST00000403491.3
NFIA
nuclear factor I/A
chr4_+_134070439 0.05 ENST00000264360.5
PCDH10
protocadherin 10
chr9_-_14314066 0.05 ENST00000397575.3
NFIB
nuclear factor I/B
chr19_+_10527449 0.05 ENST00000592685.1
ENST00000380702.2
PDE4A
phosphodiesterase 4A, cAMP-specific
chr6_-_16761678 0.04 ENST00000244769.4
ENST00000436367.1
ATXN1
ataxin 1
chr11_+_86748863 0.04 ENST00000340353.7
TMEM135
transmembrane protein 135
chr5_-_90679145 0.04 ENST00000265138.3
ARRDC3
arrestin domain containing 3
chr12_+_93965451 0.04 ENST00000548537.1
SOCS2
suppressor of cytokine signaling 2
chr3_-_124774802 0.03 ENST00000311127.4
HEG1
heart development protein with EGF-like domains 1
chrX_+_105066524 0.03 ENST00000243300.9
ENST00000428173.2
NRK
Nik related kinase
chr4_-_99579733 0.03 ENST00000305798.3
TSPAN5
tetraspanin 5
chr18_+_49866496 0.03 ENST00000442544.2
DCC
deleted in colorectal carcinoma
chr15_+_39873268 0.03 ENST00000397591.2
ENST00000260356.5
THBS1
thrombospondin 1
chr16_+_58497567 0.02 ENST00000258187.5
NDRG4
NDRG family member 4
chr15_+_57210818 0.02 ENST00000438423.2
ENST00000267811.5
ENST00000452095.2
ENST00000559609.1
ENST00000333725.5
TCF12
transcription factor 12
chr6_-_8064567 0.02 ENST00000543936.1
ENST00000397457.2
BLOC1S5
biogenesis of lysosomal organelles complex-1, subunit 5, muted
chr16_-_10674528 0.02 ENST00000359543.3
EMP2
epithelial membrane protein 2
chr8_-_71316021 0.02 ENST00000452400.2
NCOA2
nuclear receptor coactivator 2
chr2_+_170683942 0.02 ENST00000272793.5
UBR3
ubiquitin protein ligase E3 component n-recognin 3 (putative)
chr1_-_156051789 0.02 ENST00000532414.2
MEX3A
mex-3 RNA binding family member A
chr7_-_56119238 0.02 ENST00000275605.3
ENST00000395471.3
PSPH
phosphoserine phosphatase
chr4_-_114682936 0.02 ENST00000454265.2
ENST00000429180.1
ENST00000418639.2
ENST00000394526.2
ENST00000296402.5
CAMK2D
calcium/calmodulin-dependent protein kinase II delta
chr2_-_160472952 0.02 ENST00000541068.2
ENST00000355831.2
ENST00000343439.5
ENST00000392782.1
BAZ2B
bromodomain adjacent to zinc finger domain, 2B
chr12_+_19592602 0.02 ENST00000398864.3
ENST00000266508.9
AEBP2
AE binding protein 2
chr20_+_39657454 0.01 ENST00000361337.2
TOP1
topoisomerase (DNA) I
chrX_-_77041685 0.01 ENST00000373344.5
ENST00000395603.3
ATRX
alpha thalassemia/mental retardation syndrome X-linked
chr9_-_101471479 0.01 ENST00000259455.2
GABBR2
gamma-aminobutyric acid (GABA) B receptor, 2
chr15_-_77363513 0.01 ENST00000267970.4
TSPAN3
tetraspanin 3
chr3_-_114790179 0.01 ENST00000462705.1
ZBTB20
zinc finger and BTB domain containing 20
chr18_-_53255766 0.01 ENST00000566286.1
ENST00000564999.1
ENST00000566279.1
ENST00000354452.3
ENST00000356073.4
TCF4
transcription factor 4
chr10_-_11653753 0.01 ENST00000609104.1
USP6NL
USP6 N-terminal like
chr18_+_3451646 0.01 ENST00000345133.5
ENST00000330513.5
ENST00000549546.1
TGIF1
TGFB-induced factor homeobox 1
chrX_-_25034065 0.01 ENST00000379044.4
ARX
aristaless related homeobox
chr19_+_1249869 0.01 ENST00000591446.2
MIDN
midnolin
chr1_+_87794150 0.01 ENST00000370544.5
LMO4
LIM domain only 4
chr2_-_32264850 0.01 ENST00000295066.3
ENST00000342166.5
DPY30
dpy-30 homolog (C. elegans)
chr15_-_79383102 0.01 ENST00000558480.2
ENST00000419573.3
RASGRF1
Ras protein-specific guanine nucleotide-releasing factor 1
chr8_-_67525473 0.01 ENST00000522677.3
MYBL1
v-myb avian myeloblastosis viral oncogene homolog-like 1
chr11_+_92085262 0.01 ENST00000298047.6
ENST00000409404.2
ENST00000541502.1
FAT3
FAT atypical cadherin 3
chr1_-_225840747 0.01 ENST00000366843.2
ENST00000366844.3
ENAH
enabled homolog (Drosophila)
chr2_-_166651191 0.01 ENST00000392701.3
GALNT3
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
chr5_-_127873659 0.01 ENST00000262464.4
FBN2
fibrillin 2
chr2_+_191273052 0.01 ENST00000417958.1
ENST00000432036.1
ENST00000392328.1
MFSD6
major facilitator superfamily domain containing 6
chr2_+_181845298 0.01 ENST00000410062.4
UBE2E3
ubiquitin-conjugating enzyme E2E 3
chr3_+_158991025 0.01 ENST00000337808.6
IQCJ-SCHIP1
IQCJ-SCHIP1 readthrough
chr13_-_21476900 0.01 ENST00000400602.2
ENST00000255305.6
XPO4
exportin 4
chr2_-_166930131 0.01 ENST00000303395.4
ENST00000409050.1
ENST00000423058.2
ENST00000375405.3
SCN1A
sodium channel, voltage-gated, type I, alpha subunit
chr1_+_199996702 0.01 ENST00000367362.3
NR5A2
nuclear receptor subfamily 5, group A, member 2
chr3_+_159557637 0.01 ENST00000445224.2
SCHIP1
schwannomin interacting protein 1
chrX_-_114468605 0.01 ENST00000538422.1
ENST00000317135.8
LRCH2
leucine-rich repeats and calponin homology (CH) domain containing 2
chr1_-_85156216 0.01 ENST00000342203.3
ENST00000370612.4
SSX2IP
synovial sarcoma, X breakpoint 2 interacting protein
chr1_-_175712829 0.01 ENST00000367674.2
TNR
tenascin R
chr2_-_38604398 0.00 ENST00000443098.1
ENST00000449130.1
ENST00000378954.4
ENST00000539122.1
ENST00000419554.2
ENST00000451483.1
ENST00000406122.1
ATL2
atlastin GTPase 2
chr12_+_57998595 0.00 ENST00000337737.3
ENST00000548198.1
ENST00000551632.1
DTX3
deltex homolog 3 (Drosophila)
chr20_-_4982132 0.00 ENST00000338244.1
ENST00000424750.2
SLC23A2
solute carrier family 23 (ascorbic acid transporter), member 2
chr2_+_120517174 0.00 ENST00000263708.2
PTPN4
protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
chr18_-_5895954 0.00 ENST00000581347.2
TMEM200C
transmembrane protein 200C
chrX_+_41192595 0.00 ENST00000399959.2
DDX3X
DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
chr12_+_123237321 0.00 ENST00000280557.6
ENST00000455982.2
DENR
density-regulated protein
chr6_+_4021554 0.00 ENST00000337659.6
PRPF4B
pre-mRNA processing factor 4B
chr11_+_129939779 0.00 ENST00000533195.1
ENST00000533713.1
ENST00000528499.1
ENST00000539648.1
ENST00000263574.5
APLP2
amyloid beta (A4) precursor-like protein 2
chr12_+_67663056 0.00 ENST00000545606.1
CAND1
cullin-associated and neddylation-dissociated 1
chr8_-_41909496 0.00 ENST00000265713.2
ENST00000406337.1
ENST00000396930.3
ENST00000485568.1
ENST00000426524.1
KAT6A
K(lysine) acetyltransferase 6A
chr7_+_20370746 0.00 ENST00000222573.4
ITGB8
integrin, beta 8
chr1_+_29563011 0.00 ENST00000345512.3
ENST00000373779.3
ENST00000356870.3
ENST00000323874.8
ENST00000428026.2
ENST00000460170.2
PTPRU
protein tyrosine phosphatase, receptor type, U
chr1_+_2985760 0.00 ENST00000378391.2
ENST00000514189.1
ENST00000270722.5
PRDM16
PR domain containing 16
chr6_-_53213780 0.00 ENST00000304434.6
ENST00000370918.4
ELOVL5
ELOVL fatty acid elongase 5
chr2_+_113033164 0.00 ENST00000409871.1
ENST00000343936.4
ZC3H6
zinc finger CCCH-type containing 6
chr1_+_114472222 0.00 ENST00000369558.1
ENST00000369561.4
HIPK1
homeodomain interacting protein kinase 1
chr15_-_37390482 0.00 ENST00000559085.1
ENST00000397624.3
MEIS2
Meis homeobox 2
chr2_-_69870835 0.00 ENST00000409085.4
ENST00000406297.3
AAK1
AP2 associated kinase 1
chr2_+_160568978 0.00 ENST00000409175.1
ENST00000539065.1
ENST00000259050.4
ENST00000421037.1
MARCH7
membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
chrX_-_33146477 0.00 ENST00000378677.2
DMD
dystrophin
chr1_+_162467595 0.00 ENST00000538489.1
ENST00000489294.1
UHMK1
U2AF homology motif (UHM) kinase 1
chr13_+_112721913 0.00 ENST00000330949.1
SOX1
SRY (sex determining region Y)-box 1
chr10_-_735553 0.00 ENST00000280886.6
ENST00000423550.1
DIP2C
DIP2 disco-interacting protein 2 homolog C (Drosophila)
chr18_-_18691739 0.00 ENST00000399799.2
ROCK1
Rho-associated, coiled-coil containing protein kinase 1
chr5_-_136834982 0.00 ENST00000510689.1
ENST00000394945.1
SPOCK1
sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
chr14_+_50359773 0.00 ENST00000298316.5
ARF6
ADP-ribosylation factor 6

Network of associatons between targets according to the STRING database.

First level regulatory network of CUACAGU

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0071321 cellular response to cGMP(GO:0071321)
0.0 0.0 GO:0071879 positive regulation of adrenergic receptor signaling pathway(GO:0071879)
0.0 0.0 GO:0090271 positive regulation of fibroblast growth factor production(GO:0090271)
0.0 0.0 GO:0060722 spongiotrophoblast cell proliferation(GO:0060720) regulation of spongiotrophoblast cell proliferation(GO:0060721) cell proliferation involved in embryonic placenta development(GO:0060722) regulation of cell proliferation involved in embryonic placenta development(GO:0060723)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0004119 cGMP-inhibited cyclic-nucleotide phosphodiesterase activity(GO:0004119)