Inflammatory response time course, HUVEC (Wada et al., 2009)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ETS2 | hg19_v2_chr21_+_40177143_40177231, hg19_v2_chr21_+_40177755_40177875 | 0.41 | 4.3e-02 | Click! |
ETV4 | hg19_v2_chr17_-_41623716_41623800, hg19_v2_chr17_-_41623009_41623053 | 0.38 | 5.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_+_71184931 Show fit | 1.58 |
ENST00000560369.1
ENST00000260382.5 |
leucine rich repeat containing 49 |
|
chr15_+_71185148 Show fit | 1.51 |
ENST00000443425.2
ENST00000560755.1 |
leucine rich repeat containing 49 |
|
chr5_+_125758813 Show fit | 1.43 |
ENST00000285689.3
ENST00000515200.1 |
GRAM domain containing 3 |
|
chr5_+_125758865 Show fit | 1.41 |
ENST00000542322.1
ENST00000544396.1 |
GRAM domain containing 3 |
|
chr1_-_173174681 Show fit | 1.41 |
ENST00000367718.1
|
tumor necrosis factor (ligand) superfamily, member 4 |
|
chr21_+_26934165 Show fit | 1.40 |
ENST00000456917.1
|
MIR155 host gene (non-protein coding) |
|
chr2_+_103035102 Show fit | 1.39 |
ENST00000264260.2
|
interleukin 18 receptor accessory protein |
|
chr5_-_131826457 Show fit | 1.32 |
ENST00000437654.1
ENST00000245414.4 |
interferon regulatory factor 1 |
|
chr7_+_108210012 Show fit | 1.27 |
ENST00000249356.3
|
DnaJ (Hsp40) homolog, subfamily B, member 9 |
|
chr9_+_35732312 Show fit | 1.14 |
ENST00000353704.2
|
cAMP responsive element binding protein 3 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.5 | GO:0008360 | regulation of cell shape(GO:0008360) |
0.0 | 3.3 | GO:0002479 | antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent(GO:0002479) |
0.5 | 2.7 | GO:0045590 | negative regulation of regulatory T cell differentiation(GO:0045590) |
0.4 | 2.7 | GO:0033590 | response to cobalamin(GO:0033590) |
0.1 | 1.8 | GO:0010447 | response to acidic pH(GO:0010447) |
0.2 | 1.7 | GO:0042997 | negative regulation of Golgi to plasma membrane protein transport(GO:0042997) |
0.0 | 1.6 | GO:0030433 | ER-associated ubiquitin-dependent protein catabolic process(GO:0030433) |
0.2 | 1.5 | GO:2000286 | receptor internalization involved in canonical Wnt signaling pathway(GO:2000286) |
0.1 | 1.4 | GO:0019800 | peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan(GO:0019800) |
0.0 | 1.3 | GO:0032781 | positive regulation of ATPase activity(GO:0032781) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.2 | GO:0031463 | Cul3-RING ubiquitin ligase complex(GO:0031463) |
0.0 | 2.7 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.3 | 2.0 | GO:0043196 | varicosity(GO:0043196) |
0.0 | 1.8 | GO:0032580 | Golgi cisterna membrane(GO:0032580) |
0.1 | 1.7 | GO:0071004 | U2-type prespliceosome(GO:0071004) |
0.0 | 1.5 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
0.1 | 1.2 | GO:0000322 | storage vacuole(GO:0000322) |
0.0 | 1.2 | GO:0030125 | clathrin vesicle coat(GO:0030125) |
0.1 | 1.1 | GO:1990111 | spermatoproteasome complex(GO:1990111) |
0.1 | 1.1 | GO:0070765 | gamma-secretase complex(GO:0070765) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.9 | GO:0050681 | androgen receptor binding(GO:0050681) |
0.0 | 2.4 | GO:0005164 | tumor necrosis factor receptor binding(GO:0005164) |
0.1 | 2.1 | GO:0051787 | misfolded protein binding(GO:0051787) |
0.1 | 2.1 | GO:0001671 | ATPase activator activity(GO:0001671) |
0.0 | 1.8 | GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547) |
0.1 | 1.7 | GO:0034236 | protein kinase A catalytic subunit binding(GO:0034236) |
0.0 | 1.7 | GO:0005031 | tumor necrosis factor-activated receptor activity(GO:0005031) death receptor activity(GO:0005035) |
0.1 | 1.5 | GO:0008191 | metalloendopeptidase inhibitor activity(GO:0008191) |
0.0 | 1.4 | GO:0004298 | threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003) |
0.1 | 1.3 | GO:0017049 | GTP-Rho binding(GO:0017049) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.5 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
0.1 | 4.1 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.1 | 2.9 | PID IL12 STAT4 PATHWAY | IL12 signaling mediated by STAT4 |
0.0 | 2.6 | PID CDC42 REG PATHWAY | Regulation of CDC42 activity |
0.0 | 2.2 | PID TRKR PATHWAY | Neurotrophic factor-mediated Trk receptor signaling |
0.0 | 2.1 | ST B CELL ANTIGEN RECEPTOR | B Cell Antigen Receptor |
0.1 | 1.8 | PID SYNDECAN 3 PATHWAY | Syndecan-3-mediated signaling events |
0.0 | 1.8 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
0.1 | 1.5 | PID ARF 3PATHWAY | Arf1 pathway |
0.0 | 1.4 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.7 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
0.0 | 3.1 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |
0.1 | 2.4 | REACTOME PHOSPHORYLATION OF CD3 AND TCR ZETA CHAINS | Genes involved in Phosphorylation of CD3 and TCR zeta chains |
0.0 | 2.1 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.0 | 1.9 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.0 | 1.9 | REACTOME TRNA AMINOACYLATION | Genes involved in tRNA Aminoacylation |
0.0 | 1.5 | REACTOME ACTIVATION OF GENES BY ATF4 | Genes involved in Activation of Genes by ATF4 |
0.0 | 1.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.0 | 1.4 | REACTOME GPVI MEDIATED ACTIVATION CASCADE | Genes involved in GPVI-mediated activation cascade |
0.0 | 1.4 | REACTOME REGULATION OF MRNA STABILITY BY PROTEINS THAT BIND AU RICH ELEMENTS | Genes involved in Regulation of mRNA Stability by Proteins that Bind AU-rich Elements |