Inflammatory response time course, HUVEC (Wada et al., 2009)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
FOXJ2 | hg19_v2_chr12_+_8185288_8185339 | -0.37 | 6.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr15_+_67430339 Show fit | 4.78 |
ENST00000439724.3
|
SMAD family member 3 |
|
chr8_+_104383728 Show fit | 2.19 |
ENST00000330295.5
|
collagen triple helix repeat containing 1 |
|
chr2_+_162016827 Show fit | 2.02 |
ENST00000429217.1
ENST00000406287.1 ENST00000402568.1 |
TRAF family member-associated NFKB activator |
|
chr11_+_35201826 Show fit | 1.74 |
ENST00000531873.1
|
CD44 molecule (Indian blood group) |
|
chr1_+_165797024 Show fit | 1.71 |
ENST00000372212.4
|
uridine-cytidine kinase 2 |
|
chr9_+_5510492 Show fit | 1.59 |
ENST00000397745.2
|
programmed cell death 1 ligand 2 |
|
chr9_+_5510558 Show fit | 1.55 |
ENST00000397747.3
|
programmed cell death 1 ligand 2 |
|
chr2_+_162016804 Show fit | 1.41 |
ENST00000392749.2
ENST00000440506.1 |
TRAF family member-associated NFKB activator |
|
chr21_-_35899113 Show fit | 1.41 |
ENST00000492600.1
ENST00000481448.1 ENST00000381132.2 |
regulator of calcineurin 1 |
|
chr9_-_134615443 Show fit | 1.13 |
ENST00000372195.1
|
Rap guanine nucleotide exchange factor (GEF) 1 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 4.8 | GO:0061767 | negative regulation of lung blood pressure(GO:0061767) |
0.8 | 4.5 | GO:2000158 | positive regulation of ubiquitin-specific protease activity(GO:2000158) |
0.2 | 3.4 | GO:0046007 | negative regulation of activated T cell proliferation(GO:0046007) |
0.3 | 2.2 | GO:0043932 | ossification involved in bone remodeling(GO:0043932) |
0.4 | 1.7 | GO:0009224 | CMP salvage(GO:0006238) CMP biosynthetic process(GO:0009224) CMP metabolic process(GO:0046035) |
0.2 | 1.7 | GO:1900625 | regulation of monocyte aggregation(GO:1900623) positive regulation of monocyte aggregation(GO:1900625) |
0.1 | 1.7 | GO:0006346 | methylation-dependent chromatin silencing(GO:0006346) |
0.4 | 1.6 | GO:0071894 | histone H2B conserved C-terminal lysine ubiquitination(GO:0071894) |
0.1 | 1.4 | GO:0032740 | positive regulation of interleukin-17 production(GO:0032740) |
0.0 | 1.2 | GO:0070884 | regulation of calcineurin-NFAT signaling cascade(GO:0070884) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 4.8 | GO:0071144 | SMAD2-SMAD3 protein complex(GO:0071144) |
0.2 | 1.7 | GO:0035692 | macrophage migration inhibitory factor receptor complex(GO:0035692) |
0.0 | 1.6 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 1.1 | GO:0016592 | mediator complex(GO:0016592) |
0.0 | 1.1 | GO:0030670 | phagocytic vesicle membrane(GO:0030670) |
0.2 | 1.0 | GO:1990423 | RZZ complex(GO:1990423) |
0.1 | 0.8 | GO:1990761 | growth cone lamellipodium(GO:1990761) growth cone filopodium(GO:1990812) |
0.2 | 0.7 | GO:0036195 | muscle cell projection(GO:0036194) muscle cell projection membrane(GO:0036195) |
0.0 | 0.7 | GO:0030014 | CCR4-NOT complex(GO:0030014) |
0.1 | 0.6 | GO:0097208 | alveolar lamellar body(GO:0097208) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 4.8 | GO:0031962 | mineralocorticoid receptor binding(GO:0031962) |
0.8 | 4.5 | GO:0035800 | deubiquitinase activator activity(GO:0035800) |
0.1 | 3.1 | GO:0005109 | frizzled binding(GO:0005109) |
0.1 | 2.2 | GO:0000993 | RNA polymerase II core binding(GO:0000993) |
0.2 | 1.7 | GO:0004849 | uridine kinase activity(GO:0004849) |
0.1 | 1.7 | GO:0005540 | hyaluronic acid binding(GO:0005540) |
0.0 | 1.7 | GO:0008327 | methyl-CpG binding(GO:0008327) |
0.2 | 1.4 | GO:0008597 | calcium-dependent protein serine/threonine phosphatase regulator activity(GO:0008597) |
0.2 | 1.1 | GO:0048030 | disaccharide binding(GO:0048030) |
0.1 | 1.1 | GO:0017034 | Rap guanyl-nucleotide exchange factor activity(GO:0017034) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.8 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
0.0 | 3.6 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.1 | 2.2 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.1 | 1.7 | SA MMP CYTOKINE CONNECTION | Cytokines can induce activation of matrix metalloproteinases, which degrade extracellular matrix. |
0.0 | 1.4 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
0.0 | 1.2 | PID PDGFRA PATHWAY | PDGFR-alpha signaling pathway |
0.0 | 1.2 | PID GLYPICAN 1PATHWAY | Glypican 1 network |
0.0 | 0.9 | PID AURORA B PATHWAY | Aurora B signaling |
0.0 | 0.6 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
0.0 | 0.5 | PID RHODOPSIN PATHWAY | Visual signal transduction: Rods |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.8 | REACTOME SIGNALING BY NODAL | Genes involved in Signaling by NODAL |
0.1 | 4.5 | REACTOME TRAF6 MEDIATED IRF7 ACTIVATION | Genes involved in TRAF6 mediated IRF7 activation |
0.1 | 3.2 | REACTOME PD1 SIGNALING | Genes involved in PD-1 signaling |
0.1 | 1.7 | REACTOME HYALURONAN UPTAKE AND DEGRADATION | Genes involved in Hyaluronan uptake and degradation |
0.0 | 1.7 | REACTOME PYRIMIDINE METABOLISM | Genes involved in Pyrimidine metabolism |
0.0 | 1.4 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 1.1 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
0.0 | 0.8 | REACTOME THE NLRP3 INFLAMMASOME | Genes involved in The NLRP3 inflammasome |
0.0 | 0.6 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
0.0 | 0.6 | REACTOME METABOLISM OF STEROID HORMONES AND VITAMINS A AND D | Genes involved in Metabolism of steroid hormones and vitamins A and D |