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Inflammatory response time course, HUVEC (Wada et al., 2009)

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Results for GAGAUGA

Z-value: 0.20

Motif logo

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miRNA associated with seed GAGAUGA

NamemiRBASE accession
hsa-miR-143-3p
MIMAT0000435
hsa-miR-4770
MIMAT0019924
hsa-miR-6088
MIMAT0023713

Activity profile of GAGAUGA motif

Sorted Z-values of GAGAUGA motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chr5_-_100238956 0.49 ENST00000231461.5
ST8SIA4
ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4
chr2_+_45878790 0.33 ENST00000306156.3
PRKCE
protein kinase C, epsilon
chr17_+_47865917 0.21 ENST00000259021.4
ENST00000454930.2
ENST00000509773.1
ENST00000510819.1
ENST00000424009.2
KAT7
K(lysine) acetyltransferase 7
chr4_+_87856129 0.21 ENST00000395146.4
ENST00000507468.1
AFF1
AF4/FMR2 family, member 1
chr2_+_28615669 0.20 ENST00000379619.1
ENST00000264716.4
FOSL2
FOS-like antigen 2
chr9_+_79074068 0.19 ENST00000444201.2
ENST00000376730.4
GCNT1
glucosaminyl (N-acetyl) transferase 1, core 2
chr10_+_70320413 0.18 ENST00000373644.4
TET1
tet methylcytosine dioxygenase 1
chr17_-_47841485 0.16 ENST00000506156.1
ENST00000240364.2
FAM117A
family with sequence similarity 117, member A
chr12_-_46766577 0.16 ENST00000256689.5
SLC38A2
solute carrier family 38, member 2
chr11_-_73309228 0.14 ENST00000356467.4
ENST00000064778.4
FAM168A
family with sequence similarity 168, member A
chr14_+_37667118 0.13 ENST00000556615.1
ENST00000327441.7
ENST00000536774.1
MIPOL1
mirror-image polydactyly 1
chr1_-_211752073 0.12 ENST00000367001.4
SLC30A1
solute carrier family 30 (zinc transporter), member 1
chr12_+_50898881 0.12 ENST00000301180.5
DIP2B
DIP2 disco-interacting protein 2 homolog B (Drosophila)
chr14_+_77228532 0.11 ENST00000167106.4
ENST00000554237.1
VASH1
vasohibin 1
chrX_+_73641286 0.11 ENST00000587091.1
SLC16A2
solute carrier family 16, member 2 (thyroid hormone transporter)
chr15_-_44486632 0.11 ENST00000484674.1
FRMD5
FERM domain containing 5
chrX_-_106959631 0.11 ENST00000486554.1
ENST00000372390.4
TSC22D3
TSC22 domain family, member 3
chr11_-_130184555 0.11 ENST00000525842.1
ZBTB44
zinc finger and BTB domain containing 44
chr1_-_179198702 0.09 ENST00000502732.1
ABL2
c-abl oncogene 2, non-receptor tyrosine kinase
chr1_+_87794150 0.09 ENST00000370544.5
LMO4
LIM domain only 4
chr15_-_49338748 0.09 ENST00000559471.1
SECISBP2L
SECIS binding protein 2-like
chr15_-_26108355 0.09 ENST00000356865.6
ATP10A
ATPase, class V, type 10A
chr1_-_186649543 0.09 ENST00000367468.5
PTGS2
prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)
chr7_-_42276612 0.09 ENST00000395925.3
ENST00000437480.1
GLI3
GLI family zinc finger 3
chr11_+_86748863 0.08 ENST00000340353.7
TMEM135
transmembrane protein 135
chr17_+_65821780 0.08 ENST00000321892.4
ENST00000335221.5
ENST00000306378.6
BPTF
bromodomain PHD finger transcription factor
chr9_+_130830451 0.08 ENST00000373068.2
ENST00000373069.5
SLC25A25
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 25
chr6_+_107811162 0.07 ENST00000317357.5
SOBP
sine oculis binding protein homolog (Drosophila)
chr20_+_2673383 0.07 ENST00000380648.4
ENST00000342725.5
EBF4
early B-cell factor 4
chr1_+_64936428 0.07 ENST00000371073.2
ENST00000290039.5
CACHD1
cache domain containing 1
chr19_-_51141196 0.07 ENST00000338916.4
SYT3
synaptotagmin III
chr16_-_23521710 0.06 ENST00000562117.1
ENST00000567468.1
ENST00000562944.1
ENST00000309859.4
GGA2
golgi-associated, gamma adaptin ear containing, ARF binding protein 2
chr2_+_181845298 0.06 ENST00000410062.4
UBE2E3
ubiquitin-conjugating enzyme E2E 3
chrX_-_109561294 0.05 ENST00000372059.2
ENST00000262844.5
AMMECR1
Alport syndrome, mental retardation, midface hypoplasia and elliptocytosis chromosomal region gene 1
chr11_+_113930291 0.05 ENST00000335953.4
ZBTB16
zinc finger and BTB domain containing 16
chr17_-_61920280 0.05 ENST00000448276.2
ENST00000577990.1
SMARCD2
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
chr12_-_65146636 0.05 ENST00000418919.2
GNS
glucosamine (N-acetyl)-6-sulfatase
chr2_+_233562015 0.05 ENST00000427233.1
ENST00000373566.3
ENST00000373563.4
ENST00000428883.1
ENST00000456491.1
ENST00000409480.1
ENST00000421433.1
ENST00000425040.1
ENST00000430720.1
ENST00000409547.1
ENST00000423659.1
ENST00000409196.3
ENST00000409451.3
ENST00000429187.1
ENST00000440945.1
GIGYF2
GRB10 interacting GYF protein 2
chr1_+_62208091 0.05 ENST00000316485.6
ENST00000371158.2
INADL
InaD-like (Drosophila)
chr2_-_25873079 0.05 ENST00000496972.2
DTNB
dystrobrevin, beta
chr6_-_52441713 0.05 ENST00000182527.3
TRAM2
translocation associated membrane protein 2
chr6_-_132272504 0.05 ENST00000367976.3
CTGF
connective tissue growth factor
chr14_+_105992906 0.05 ENST00000392519.2
TMEM121
transmembrane protein 121
chr11_+_13690200 0.05 ENST00000354817.3
FAR1
fatty acyl CoA reductase 1
chr9_+_130374537 0.04 ENST00000373302.3
ENST00000373299.1
STXBP1
syntaxin binding protein 1
chr9_+_90112741 0.04 ENST00000469640.2
DAPK1
death-associated protein kinase 1
chr13_+_28813645 0.04 ENST00000282391.5
PAN3
PAN3 poly(A) specific ribonuclease subunit homolog (S. cerevisiae)
chr11_-_9336234 0.04 ENST00000528080.1
TMEM41B
transmembrane protein 41B
chr9_-_20622478 0.04 ENST00000355930.6
ENST00000380338.4
MLLT3
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3
chr12_-_42538657 0.04 ENST00000398675.3
GXYLT1
glucoside xylosyltransferase 1
chr1_-_231560790 0.04 ENST00000366641.3
EGLN1
egl-9 family hypoxia-inducible factor 1
chr17_-_46623441 0.04 ENST00000330070.4
HOXB2
homeobox B2
chr3_+_97483366 0.04 ENST00000463745.1
ENST00000462412.1
ARL6
ADP-ribosylation factor-like 6
chr9_-_71155783 0.04 ENST00000377311.3
TMEM252
transmembrane protein 252
chr13_+_48807288 0.03 ENST00000378565.5
ITM2B
integral membrane protein 2B
chr17_+_60704762 0.03 ENST00000303375.5
MRC2
mannose receptor, C type 2
chr15_+_77287426 0.03 ENST00000558012.1
ENST00000267939.5
ENST00000379595.3
PSTPIP1
proline-serine-threonine phosphatase interacting protein 1
chr2_+_120517174 0.03 ENST00000263708.2
PTPN4
protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
chrX_+_9983602 0.03 ENST00000380861.4
WWC3
WWC family member 3
chr10_-_126849068 0.03 ENST00000494626.2
ENST00000337195.5
CTBP2
C-terminal binding protein 2
chr2_-_164592497 0.03 ENST00000333129.3
ENST00000409634.1
FIGN
fidgetin
chr12_+_60083118 0.03 ENST00000261187.4
ENST00000543448.1
SLC16A7
solute carrier family 16 (monocarboxylate transporter), member 7
chr17_+_38278530 0.03 ENST00000398532.4
MSL1
male-specific lethal 1 homolog (Drosophila)
chr12_-_49449107 0.03 ENST00000301067.7
KMT2D
lysine (K)-specific methyltransferase 2D
chr16_+_50187556 0.03 ENST00000561678.1
ENST00000357464.3
PAPD5
PAP associated domain containing 5
chr12_+_8234807 0.03 ENST00000339754.5
NECAP1
NECAP endocytosis associated 1
chr4_-_24914508 0.03 ENST00000504487.1
CCDC149
coiled-coil domain containing 149
chr7_+_2671568 0.02 ENST00000258796.7
TTYH3
tweety family member 3
chr16_+_70148230 0.02 ENST00000398122.3
ENST00000568530.1
PDPR
pyruvate dehydrogenase phosphatase regulatory subunit
chr3_-_122102065 0.02 ENST00000479899.1
ENST00000291458.5
ENST00000497726.1
CCDC58
coiled-coil domain containing 58
chr2_+_173292301 0.02 ENST00000264106.6
ENST00000375221.2
ENST00000343713.4
ITGA6
integrin, alpha 6
chr19_-_14629224 0.02 ENST00000254322.2
DNAJB1
DnaJ (Hsp40) homolog, subfamily B, member 1
chr11_+_57520715 0.02 ENST00000524630.1
ENST00000529919.1
ENST00000399039.4
ENST00000533189.1
CTNND1
catenin (cadherin-associated protein), delta 1
chr3_-_52188397 0.02 ENST00000474012.1
ENST00000296484.2
POC1A
POC1 centriolar protein A
chr7_+_142985308 0.02 ENST00000310447.5
CASP2
caspase 2, apoptosis-related cysteine peptidase
chr9_+_116638562 0.02 ENST00000374126.5
ENST00000288466.7
ZNF618
zinc finger protein 618
chr6_+_43265992 0.02 ENST00000449231.1
ENST00000372589.3
ENST00000372585.5
SLC22A7
solute carrier family 22 (organic anion transporter), member 7
chr2_+_220042933 0.02 ENST00000430297.2
FAM134A
family with sequence similarity 134, member A
chr15_+_39873268 0.02 ENST00000397591.2
ENST00000260356.5
THBS1
thrombospondin 1
chr10_+_65281123 0.02 ENST00000298249.4
ENST00000373758.4
REEP3
receptor accessory protein 3
chr4_+_99916765 0.02 ENST00000296411.6
METAP1
methionyl aminopeptidase 1
chr18_-_29522989 0.02 ENST00000582539.1
ENST00000283351.4
ENST00000582513.1
TRAPPC8
trafficking protein particle complex 8
chr17_+_28705921 0.02 ENST00000225719.4
CPD
carboxypeptidase D
chr2_+_86947296 0.02 ENST00000283632.4
RMND5A
required for meiotic nuclear division 5 homolog A (S. cerevisiae)
chr5_-_154317740 0.02 ENST00000285873.7
GEMIN5
gem (nuclear organelle) associated protein 5
chr3_+_9834758 0.02 ENST00000485273.1
ENST00000433034.1
ENST00000397256.1
ARPC4
ARPC4-TTLL3
actin related protein 2/3 complex, subunit 4, 20kDa
ARPC4-TTLL3 readthrough
chr3_+_183873098 0.02 ENST00000313143.3
DVL3
dishevelled segment polarity protein 3
chr13_+_45563721 0.02 ENST00000361121.2
GPALPP1
GPALPP motifs containing 1
chr17_+_56160768 0.02 ENST00000579991.2
DYNLL2
dynein, light chain, LC8-type 2
chr5_+_145583156 0.02 ENST00000265271.5
RBM27
RNA binding motif protein 27
chr3_-_125094093 0.02 ENST00000484491.1
ENST00000492394.1
ENST00000471196.1
ENST00000468369.1
ENST00000544464.1
ENST00000485866.1
ENST00000360647.4
ZNF148
zinc finger protein 148
chr2_-_85839146 0.02 ENST00000306336.5
ENST00000409734.3
C2orf68
chromosome 2 open reading frame 68
chr1_-_40137710 0.02 ENST00000235628.1
NT5C1A
5'-nucleotidase, cytosolic IA
chr11_-_67236691 0.02 ENST00000544903.1
ENST00000308022.2
ENST00000393877.3
ENST00000452789.2
TMEM134
transmembrane protein 134
chr11_+_76494253 0.01 ENST00000333090.4
TSKU
tsukushi, small leucine rich proteoglycan
chr11_-_77532050 0.01 ENST00000308488.6
RSF1
remodeling and spacing factor 1
chr20_+_56964169 0.01 ENST00000475243.1
VAPB
VAMP (vesicle-associated membrane protein)-associated protein B and C
chr5_+_139944024 0.01 ENST00000323146.3
SLC35A4
solute carrier family 35, member A4
chr18_-_54305658 0.01 ENST00000586262.1
ENST00000217515.6
TXNL1
thioredoxin-like 1
chr5_+_54455946 0.01 ENST00000503787.1
ENST00000296734.6
ENST00000515370.1
GPX8
glutathione peroxidase 8 (putative)
chr17_+_61086917 0.01 ENST00000424789.2
ENST00000389520.4
TANC2
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr20_-_48099182 0.01 ENST00000371741.4
KCNB1
potassium voltage-gated channel, Shab-related subfamily, member 1
chr15_+_68871308 0.01 ENST00000261861.5
CORO2B
coronin, actin binding protein, 2B
chr14_-_96830207 0.01 ENST00000359933.4
ATG2B
autophagy related 2B
chrX_+_133507327 0.01 ENST00000332070.3
ENST00000394292.1
ENST00000370799.1
ENST00000416404.2
PHF6
PHD finger protein 6
chr10_-_89623194 0.01 ENST00000445946.3
KLLN
killin, p53-regulated DNA replication inhibitor
chr4_+_15004165 0.01 ENST00000538197.1
ENST00000541112.1
ENST00000442003.2
CPEB2
cytoplasmic polyadenylation element binding protein 2
chr1_+_36348790 0.01 ENST00000373204.4
AGO1
argonaute RISC catalytic component 1
chr9_-_74525658 0.01 ENST00000333421.6
ABHD17B
abhydrolase domain containing 17B
chr17_-_28618948 0.01 ENST00000261714.6
BLMH
bleomycin hydrolase
chr6_+_32709119 0.01 ENST00000374940.3
HLA-DQA2
major histocompatibility complex, class II, DQ alpha 2
chr6_+_118228657 0.01 ENST00000360388.4
SLC35F1
solute carrier family 35, member F1
chr6_-_24721054 0.01 ENST00000378119.4
C6orf62
chromosome 6 open reading frame 62
chr14_+_101193164 0.01 ENST00000341267.4
DLK1
delta-like 1 homolog (Drosophila)
chr10_+_76871454 0.01 ENST00000372687.4
SAMD8
sterile alpha motif domain containing 8
chr19_-_46476791 0.01 ENST00000263257.5
NOVA2
neuro-oncological ventral antigen 2
chr3_+_9975497 0.01 ENST00000397170.3
ENST00000383811.3
ENST00000452070.1
ENST00000326434.5
CRELD1
cysteine-rich with EGF-like domains 1
chr8_-_116681221 0.01 ENST00000395715.3
TRPS1
trichorhinophalangeal syndrome I
chr19_+_3359561 0.01 ENST00000589123.1
ENST00000346156.5
ENST00000395111.3
ENST00000586919.1
NFIC
nuclear factor I/C (CCAAT-binding transcription factor)
chr5_+_154092396 0.01 ENST00000336314.4
LARP1
La ribonucleoprotein domain family, member 1
chrX_-_63425561 0.01 ENST00000374869.3
ENST00000330258.3
AMER1
APC membrane recruitment protein 1
chr19_-_13617247 0.01 ENST00000573710.2
CACNA1A
calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
chr5_+_141303373 0.01 ENST00000432126.2
ENST00000194118.4
KIAA0141
KIAA0141
chr3_-_114790179 0.01 ENST00000462705.1
ZBTB20
zinc finger and BTB domain containing 20
chr17_+_38219063 0.01 ENST00000584985.1
ENST00000264637.4
ENST00000450525.2
THRA
thyroid hormone receptor, alpha
chr4_+_44680429 0.01 ENST00000281543.5
GUF1
GUF1 GTPase homolog (S. cerevisiae)
chr1_-_41131326 0.01 ENST00000372684.3
RIMS3
regulating synaptic membrane exocytosis 3
chr12_-_25403737 0.01 ENST00000256078.4
ENST00000556131.1
ENST00000311936.3
ENST00000557334.1
KRAS
Kirsten rat sarcoma viral oncogene homolog
chr10_+_105253661 0.01 ENST00000369780.4
NEURL
neuralized E3 ubiquitin protein ligase 1
chr5_-_159846399 0.01 ENST00000297151.4
SLU7
SLU7 splicing factor homolog (S. cerevisiae)
chr11_-_79151695 0.01 ENST00000278550.7
TENM4
teneurin transmembrane protein 4
chr2_-_10952922 0.01 ENST00000272227.3
PDIA6
protein disulfide isomerase family A, member 6
chr7_+_31092076 0.01 ENST00000304166.4
ADCYAP1R1
adenylate cyclase activating polypeptide 1 (pituitary) receptor type I
chr20_-_40247133 0.01 ENST00000373233.3
ENST00000309279.7
CHD6
chromodomain helicase DNA binding protein 6
chr19_-_40324255 0.01 ENST00000593685.1
ENST00000600611.1
DYRK1B
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
chr1_+_2323260 0.01 ENST00000378518.1
ENST00000605895.1
ENST00000378513.3
ENST00000306256.9
ENST00000378512.1
RER1
retention in endoplasmic reticulum sorting receptor 1
chr5_+_142149955 0.01 ENST00000378004.3
ARHGAP26
Rho GTPase activating protein 26
chr19_+_37960240 0.01 ENST00000388801.3
ZNF570
zinc finger protein 570
chr2_+_97481974 0.01 ENST00000377060.3
ENST00000305510.3
CNNM3
cyclin M3
chr19_-_38806560 0.01 ENST00000591755.1
ENST00000337679.8
ENST00000339413.6
YIF1B
Yip1 interacting factor homolog B (S. cerevisiae)
chr1_-_115259337 0.00 ENST00000369535.4
NRAS
neuroblastoma RAS viral (v-ras) oncogene homolog
chr15_+_31619013 0.00 ENST00000307145.3
KLF13
Kruppel-like factor 13
chr22_+_40390930 0.00 ENST00000333407.6
FAM83F
family with sequence similarity 83, member F
chr2_+_172778952 0.00 ENST00000392584.1
ENST00000264108.4
HAT1
histone acetyltransferase 1
chrX_-_110655391 0.00 ENST00000356915.2
ENST00000356220.3
DCX
doublecortin
chr17_+_57784826 0.00 ENST00000262291.4
VMP1
vacuole membrane protein 1
chr12_-_54673871 0.00 ENST00000209875.4
CBX5
chromobox homolog 5
chr12_+_103981044 0.00 ENST00000388887.2
STAB2
stabilin 2
chrX_+_77359671 0.00 ENST00000373316.4
PGK1
phosphoglycerate kinase 1
chr2_-_73053126 0.00 ENST00000272427.6
ENST00000410104.1
EXOC6B
exocyst complex component 6B
chr3_+_19189946 0.00 ENST00000328405.2
KCNH8
potassium voltage-gated channel, subfamily H (eag-related), member 8
chr2_-_9563319 0.00 ENST00000497105.1
ENST00000360635.3
ENST00000359712.3
ITGB1BP1
integrin beta 1 binding protein 1
chr2_+_187350883 0.00 ENST00000337859.6
ZC3H15
zinc finger CCCH-type containing 15
chr18_-_60987220 0.00 ENST00000398117.1
BCL2
B-cell CLL/lymphoma 2
chr2_-_69870835 0.00 ENST00000409085.4
ENST00000406297.3
AAK1
AP2 associated kinase 1
chr17_-_29151794 0.00 ENST00000324238.6
CRLF3
cytokine receptor-like factor 3
chr5_+_141488070 0.00 ENST00000253814.4
NDFIP1
Nedd4 family interacting protein 1
chr20_+_30865429 0.00 ENST00000375712.3
KIF3B
kinesin family member 3B
chr1_+_110527308 0.00 ENST00000369799.5
AHCYL1
adenosylhomocysteinase-like 1

Network of associatons between targets according to the STRING database.

First level regulatory network of GAGAUGA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0035669 TRAM-dependent toll-like receptor signaling pathway(GO:0035668) TRAM-dependent toll-like receptor 4 signaling pathway(GO:0035669)
0.1 0.2 GO:0072720 response to dithiothreitol(GO:0072720)
0.1 0.2 GO:0090310 negative regulation of methylation-dependent chromatin silencing(GO:0090310)
0.0 0.1 GO:1901491 negative regulation of lymphangiogenesis(GO:1901491)
0.0 0.5 GO:0001574 ganglioside biosynthetic process(GO:0001574)
0.0 0.1 GO:0090271 positive regulation of fibroblast growth factor production(GO:0090271)
0.0 0.1 GO:0021798 forebrain dorsal/ventral pattern formation(GO:0021798)
0.0 0.2 GO:0032328 alanine transport(GO:0032328)
0.0 0.1 GO:0097501 detoxification of inorganic compound(GO:0061687) stress response to metal ion(GO:0097501)
0.0 0.0 GO:0034059 response to anoxia(GO:0034059)
0.0 0.2 GO:0060352 cell adhesion molecule production(GO:0060352)
0.0 0.0 GO:0007412 axon target recognition(GO:0007412) regulation of synaptic vesicle fusion to presynaptic membrane(GO:0031630)
0.0 0.0 GO:0021569 rhombomere 3 development(GO:0021569)
0.0 0.1 GO:0070236 negative regulation of activation-induced cell death of T cells(GO:0070236)
0.0 0.1 GO:0098728 germ-line stem cell division(GO:0042078) male germ-line stem cell asymmetric division(GO:0048133) positive regulation of NK T cell differentiation(GO:0051138) germline stem cell asymmetric division(GO:0098728)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.0 GO:0048787 presynaptic active zone membrane(GO:0048787)
0.0 0.0 GO:0031251 PAN complex(GO:0031251)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0004699 calcium-independent protein kinase C activity(GO:0004699)
0.1 0.2 GO:0003829 beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase activity(GO:0003829)
0.1 0.5 GO:0003828 alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity(GO:0003828)
0.1 0.2 GO:0070579 methylcytosine dioxygenase activity(GO:0070579)
0.0 0.1 GO:0004666 prostaglandin-endoperoxide synthase activity(GO:0004666)
0.0 0.1 GO:0032184 SUMO polymer binding(GO:0032184)
0.0 0.1 GO:0035368 selenocysteine insertion sequence binding(GO:0035368)
0.0 0.2 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 0.1 GO:0015349 thyroid hormone transmembrane transporter activity(GO:0015349)
0.0 0.1 GO:0043426 MRF binding(GO:0043426)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 PID LPA4 PATHWAY LPA4-mediated signaling events