Inflammatory response time course, HUVEC (Wada et al., 2009)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
ONECUT1 | hg19_v2_chr15_-_53082178_53082209 | -0.33 | 1.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr21_+_42792442 Show fit | 4.63 |
ENST00000398600.2
|
myxovirus (influenza virus) resistance 1, interferon-inducible protein p78 (mouse) |
|
chr11_-_72385437 Show fit | 4.37 |
ENST00000418754.2
ENST00000542969.2 ENST00000334456.5 |
phosphodiesterase 2A, cGMP-stimulated |
|
chr21_+_27011899 Show fit | 3.56 |
ENST00000425221.2
|
junctional adhesion molecule 2 |
|
chr3_-_79816965 Show fit | 3.15 |
ENST00000464233.1
|
roundabout, axon guidance receptor, homolog 1 (Drosophila) |
|
chr6_+_127898312 Show fit | 3.07 |
ENST00000329722.7
|
chromosome 6 open reading frame 58 |
|
chr12_-_76817036 Show fit | 2.99 |
ENST00000546946.1
|
oxysterol binding protein-like 8 |
|
chr7_-_115670792 Show fit | 2.11 |
ENST00000265440.7
ENST00000393485.1 |
transcription factor EC |
|
chr11_+_19799327 Show fit | 2.09 |
ENST00000540292.1
|
neuron navigator 2 |
|
chr7_-_115670804 Show fit | 2.05 |
ENST00000320239.7
|
transcription factor EC |
|
chr1_-_186649543 Show fit | 1.80 |
ENST00000367468.5
|
prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 4.6 | GO:0003373 | dynamin polymerization involved in membrane fission(GO:0003373) dynamin polymerization involved in mitochondrial fission(GO:0003374) |
1.1 | 4.4 | GO:0033159 | negative regulation of protein import into nucleus, translocation(GO:0033159) |
0.1 | 3.8 | GO:0007171 | activation of transmembrane receptor protein tyrosine kinase activity(GO:0007171) |
0.0 | 3.4 | GO:0034605 | cellular response to heat(GO:0034605) |
1.0 | 3.1 | GO:0021823 | cerebral cortex tangential migration using cell-cell interactions(GO:0021823) postnatal olfactory bulb interneuron migration(GO:0021827) chemorepulsion involved in postnatal olfactory bulb interneuron migration(GO:0021836) |
0.2 | 3.0 | GO:0090204 | protein localization to nuclear pore(GO:0090204) |
0.6 | 2.4 | GO:0060697 | positive regulation of phospholipid catabolic process(GO:0060697) |
0.2 | 2.1 | GO:0003025 | regulation of systemic arterial blood pressure by baroreceptor feedback(GO:0003025) |
0.5 | 2.0 | GO:0003331 | regulation of extracellular matrix constituent secretion(GO:0003330) positive regulation of extracellular matrix constituent secretion(GO:0003331) |
0.1 | 1.9 | GO:0036315 | cellular response to sterol(GO:0036315) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 7.3 | GO:0031965 | nuclear membrane(GO:0031965) |
0.0 | 3.9 | GO:0005923 | bicellular tight junction(GO:0005923) |
0.0 | 3.7 | GO:0042734 | presynaptic membrane(GO:0042734) |
0.0 | 2.5 | GO:0005741 | mitochondrial outer membrane(GO:0005741) organelle outer membrane(GO:0031968) |
0.3 | 2.4 | GO:0034363 | intermediate-density lipoprotein particle(GO:0034363) |
0.0 | 2.4 | GO:0048770 | melanosome(GO:0042470) pigment granule(GO:0048770) |
0.1 | 2.1 | GO:0005614 | interstitial matrix(GO:0005614) |
0.0 | 1.8 | GO:0005901 | caveola(GO:0005901) |
0.0 | 1.7 | GO:0000932 | cytoplasmic mRNA processing body(GO:0000932) |
0.1 | 1.1 | GO:0042587 | glycogen granule(GO:0042587) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.1 | GO:0008017 | microtubule binding(GO:0008017) |
0.7 | 4.4 | GO:0004118 | cGMP-stimulated cyclic-nucleotide phosphodiesterase activity(GO:0004118) |
0.1 | 3.9 | GO:0005161 | platelet-derived growth factor receptor binding(GO:0005161) |
0.0 | 3.6 | GO:0003714 | transcription corepressor activity(GO:0003714) |
0.4 | 3.1 | GO:0008046 | axon guidance receptor activity(GO:0008046) |
0.1 | 3.0 | GO:0070273 | phosphatidylinositol-4-phosphate binding(GO:0070273) |
0.4 | 2.7 | GO:0060230 | lipoprotein lipase activator activity(GO:0060230) |
0.0 | 2.6 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
0.1 | 2.0 | GO:0004181 | metallocarboxypeptidase activity(GO:0004181) |
0.2 | 1.9 | GO:0008142 | oxysterol binding(GO:0008142) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
0.0 | 3.6 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 2.9 | PID AJDISS 2PATHWAY | Posttranslational regulation of adherens junction stability and dissassembly |
0.1 | 1.8 | PID S1P S1P1 PATHWAY | S1P1 pathway |
0.0 | 1.8 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 1.6 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
0.0 | 1.1 | PID SHP2 PATHWAY | SHP2 signaling |
0.0 | 0.9 | PID BMP PATHWAY | BMP receptor signaling |
0.0 | 0.8 | PID HDAC CLASSIII PATHWAY | Signaling events mediated by HDAC Class III |
0.0 | 0.8 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.5 | REACTOME INTERFERON ALPHA BETA SIGNALING | Genes involved in Interferon alpha/beta signaling |
0.1 | 4.3 | REACTOME CGMP EFFECTS | Genes involved in cGMP effects |
0.2 | 3.9 | REACTOME VEGF LIGAND RECEPTOR INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
0.0 | 3.7 | REACTOME CELL SURFACE INTERACTIONS AT THE VASCULAR WALL | Genes involved in Cell surface interactions at the vascular wall |
0.2 | 3.6 | REACTOME ACTIVATION OF RAC | Genes involved in Activation of Rac |
0.1 | 2.7 | REACTOME AMINO ACID TRANSPORT ACROSS THE PLASMA MEMBRANE | Genes involved in Amino acid transport across the plasma membrane |
0.1 | 2.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.0 | 2.1 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 1.8 | REACTOME PHASE1 FUNCTIONALIZATION OF COMPOUNDS | Genes involved in Phase 1 - Functionalization of compounds |
0.0 | 1.6 | REACTOME IMMUNOREGULATORY INTERACTIONS BETWEEN A LYMPHOID AND A NON LYMPHOID CELL | Genes involved in Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell |