Inflammatory response time course, HUVEC (Wada et al., 2009)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
TEAD4 | hg19_v2_chr12_+_3068544_3068597, hg19_v2_chr12_+_3069037_3069119, hg19_v2_chr12_+_3068466_3068496 | 0.73 | 2.9e-05 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr4_+_41614909 Show fit | 4.32 |
ENST00000509454.1
ENST00000396595.3 ENST00000381753.4 |
LIM and calponin homology domains 1 |
|
chr4_+_41614720 Show fit | 3.84 |
ENST00000509277.1
|
LIM and calponin homology domains 1 |
|
chr3_-_18466026 Show fit | 2.92 |
ENST00000417717.2
|
SATB homeobox 1 |
|
chr4_-_159080806 Show fit | 2.63 |
ENST00000590648.1
|
family with sequence similarity 198, member B |
|
chr4_-_186732048 Show fit | 2.56 |
ENST00000448662.2
ENST00000439049.1 ENST00000420158.1 ENST00000431808.1 ENST00000319471.9 |
sorbin and SH3 domain containing 2 |
|
chr15_-_69113218 Show fit | 2.45 |
ENST00000560303.1
ENST00000465139.2 |
acidic (leucine-rich) nuclear phosphoprotein 32 family, member A |
|
chr2_+_38893208 Show fit | 2.29 |
ENST00000410063.1
|
galactose mutarotase (aldose 1-epimerase) |
|
chr2_-_136875712 Show fit | 2.17 |
ENST00000241393.3
|
chemokine (C-X-C motif) receptor 4 |
|
chr5_-_111093167 Show fit | 2.09 |
ENST00000446294.2
ENST00000419114.2 |
neuronal regeneration related protein |
|
chr9_+_2029019 Show fit | 2.04 |
ENST00000382194.1
|
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 5.8 | GO:0006958 | complement activation, classical pathway(GO:0006958) |
0.0 | 4.4 | GO:0031032 | actomyosin structure organization(GO:0031032) |
1.3 | 3.8 | GO:0098746 | fast, calcium ion-dependent exocytosis of neurotransmitter(GO:0098746) |
0.3 | 3.2 | GO:0042908 | xenobiotic transport(GO:0042908) |
0.8 | 3.0 | GO:0033499 | galactose catabolic process via UDP-galactose(GO:0033499) |
0.2 | 2.8 | GO:0043374 | CD8-positive, alpha-beta T cell differentiation(GO:0043374) |
0.1 | 2.7 | GO:0035162 | embryonic hemopoiesis(GO:0035162) |
0.1 | 2.6 | GO:0061049 | physiological muscle hypertrophy(GO:0003298) physiological cardiac muscle hypertrophy(GO:0003301) cell growth involved in cardiac muscle cell development(GO:0061049) |
0.0 | 2.5 | GO:0043486 | histone exchange(GO:0043486) |
0.3 | 2.2 | GO:0039663 | fusion of virus membrane with host plasma membrane(GO:0019064) membrane fusion involved in viral entry into host cell(GO:0039663) multi-organism membrane fusion(GO:0044800) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 3.8 | GO:0060200 | clathrin-sculpted acetylcholine transport vesicle(GO:0060200) clathrin-sculpted acetylcholine transport vesicle membrane(GO:0060201) |
0.1 | 2.0 | GO:0071564 | npBAF complex(GO:0071564) |
0.0 | 2.0 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
0.0 | 1.8 | GO:0005720 | nuclear heterochromatin(GO:0005720) |
0.2 | 1.5 | GO:1903440 | calcitonin family receptor complex(GO:1903439) amylin receptor complex(GO:1903440) |
0.0 | 1.3 | GO:0005881 | cytoplasmic microtubule(GO:0005881) |
0.1 | 1.1 | GO:1990761 | growth cone lamellipodium(GO:1990761) growth cone filopodium(GO:1990812) |
0.0 | 1.1 | GO:0005778 | peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903) |
0.0 | 1.0 | GO:0000930 | gamma-tubulin complex(GO:0000930) |
0.0 | 1.0 | GO:0000123 | histone acetyltransferase complex(GO:0000123) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 5.8 | GO:0005044 | scavenger receptor activity(GO:0005044) |
0.0 | 4.4 | GO:0042393 | histone binding(GO:0042393) |
0.6 | 3.8 | GO:0030348 | syntaxin-3 binding(GO:0030348) |
0.4 | 3.2 | GO:0008559 | xenobiotic-transporting ATPase activity(GO:0008559) |
0.2 | 3.0 | GO:0016857 | racemase and epimerase activity, acting on carbohydrates and derivatives(GO:0016857) |
0.1 | 3.0 | GO:0008093 | cytoskeletal adaptor activity(GO:0008093) |
0.2 | 2.2 | GO:0016494 | C-X-C chemokine receptor activity(GO:0016494) |
0.1 | 1.8 | GO:0005225 | volume-sensitive anion channel activity(GO:0005225) |
0.1 | 1.6 | GO:0017075 | syntaxin-1 binding(GO:0017075) |
0.4 | 1.5 | GO:0004948 | calcitonin receptor activity(GO:0004948) calcitonin receptor binding(GO:0031716) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 3.8 | SIG CD40PATHWAYMAP | Genes related to CD40 signaling |
0.0 | 3.8 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.1 | 3.3 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.0 | 3.0 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 2.9 | PID AR TF PATHWAY | Regulation of Androgen receptor activity |
0.0 | 2.0 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
0.0 | 1.9 | PID NETRIN PATHWAY | Netrin-mediated signaling events |
0.0 | 1.1 | PID ARF6 DOWNSTREAM PATHWAY | Arf6 downstream pathway |
0.0 | 1.1 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
0.0 | 0.6 | PID FRA PATHWAY | Validated transcriptional targets of AP1 family members Fra1 and Fra2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.0 | REACTOME REGULATION OF COMPLEMENT CASCADE | Genes involved in Regulation of Complement cascade |
0.2 | 3.8 | REACTOME NOREPINEPHRINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Norepinephrine Neurotransmitter Release Cycle |
0.0 | 2.9 | REACTOME APOPTOTIC CLEAVAGE OF CELLULAR PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
0.0 | 2.5 | REACTOME REGULATION OF MRNA STABILITY BY PROTEINS THAT BIND AU RICH ELEMENTS | Genes involved in Regulation of mRNA Stability by Proteins that Bind AU-rich Elements |
0.4 | 2.2 | REACTOME BINDING AND ENTRY OF HIV VIRION | Genes involved in Binding and entry of HIV virion |
0.1 | 1.9 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
0.0 | 1.9 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
0.0 | 1.9 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.0 | 1.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 1.6 | REACTOME CLASS B 2 SECRETIN FAMILY RECEPTORS | Genes involved in Class B/2 (Secretin family receptors) |