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Inflammatory response time course, HUVEC (Wada et al., 2009)

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Results for UAAGACG

Z-value: 0.17

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miRNA associated with seed UAAGACG

NamemiRBASE accession
hsa-miR-208a-3p
MIMAT0000241
hsa-miR-208b-3p
MIMAT0004960

Activity profile of UAAGACG motif

Sorted Z-values of UAAGACG motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
chrX_+_68048803 0.27 ENST00000204961.4
EFNB1
ephrin-B1
chr21_-_16437255 0.26 ENST00000400199.1
ENST00000400202.1
NRIP1
nuclear receptor interacting protein 1
chr4_+_139936905 0.25 ENST00000280614.2
CCRN4L
CCR4 carbon catabolite repression 4-like (S. cerevisiae)
chr1_-_205782304 0.23 ENST00000367137.3
SLC41A1
solute carrier family 41 (magnesium transporter), member 1
chr2_-_208030647 0.21 ENST00000309446.6
KLF7
Kruppel-like factor 7 (ubiquitous)
chr8_-_141645645 0.20 ENST00000519980.1
ENST00000220592.5
AGO2
argonaute RISC catalytic component 2
chr6_+_36646435 0.17 ENST00000244741.5
ENST00000405375.1
ENST00000373711.2
CDKN1A
cyclin-dependent kinase inhibitor 1A (p21, Cip1)
chr7_-_139876812 0.15 ENST00000397560.2
JHDM1D
lysine (K)-specific demethylase 7A
chr1_+_50574585 0.13 ENST00000371824.1
ENST00000371823.4
ELAVL4
ELAV like neuron-specific RNA binding protein 4
chr11_-_2950642 0.12 ENST00000314222.4
PHLDA2
pleckstrin homology-like domain, family A, member 2
chr8_-_23712312 0.10 ENST00000290271.2
STC1
stanniocalcin 1
chr5_+_129240151 0.10 ENST00000305031.4
CHSY3
chondroitin sulfate synthase 3
chr6_+_37225540 0.10 ENST00000373491.3
TBC1D22B
TBC1 domain family, member 22B
chr5_+_143584814 0.09 ENST00000507359.3
KCTD16
potassium channel tetramerization domain containing 16
chr1_-_55680762 0.09 ENST00000407756.1
ENST00000294383.6
USP24
ubiquitin specific peptidase 24
chr9_+_101867359 0.09 ENST00000374994.4
TGFBR1
transforming growth factor, beta receptor 1
chr15_+_52311398 0.08 ENST00000261845.5
MAPK6
mitogen-activated protein kinase 6
chr8_+_38614807 0.08 ENST00000330691.6
ENST00000348567.4
TACC1
transforming, acidic coiled-coil containing protein 1
chr5_-_114880533 0.08 ENST00000274457.3
FEM1C
fem-1 homolog c (C. elegans)
chr14_-_50698276 0.08 ENST00000216373.5
SOS2
son of sevenless homolog 2 (Drosophila)
chr12_-_26278030 0.07 ENST00000242728.4
BHLHE41
basic helix-loop-helix family, member e41
chr12_+_72148614 0.07 ENST00000261263.3
RAB21
RAB21, member RAS oncogene family
chr2_-_131850951 0.06 ENST00000409185.1
ENST00000389915.3
FAM168B
family with sequence similarity 168, member B
chr20_+_48552908 0.06 ENST00000244061.2
RNF114
ring finger protein 114
chr6_-_13711773 0.06 ENST00000011619.3
RANBP9
RAN binding protein 9
chrX_+_41192595 0.06 ENST00000399959.2
DDX3X
DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
chr2_+_228029281 0.06 ENST00000396578.3
COL4A3
collagen, type IV, alpha 3 (Goodpasture antigen)
chr12_-_93323013 0.06 ENST00000322349.8
EEA1
early endosome antigen 1
chr8_+_56014949 0.06 ENST00000327381.6
XKR4
XK, Kell blood group complex subunit-related family, member 4
chr5_-_76788317 0.06 ENST00000296679.4
WDR41
WD repeat domain 41
chr16_+_54964740 0.06 ENST00000394636.4
IRX5
iroquois homeobox 5
chr5_-_158526756 0.05 ENST00000313708.6
ENST00000517373.1
EBF1
early B-cell factor 1
chr9_+_82186872 0.05 ENST00000376544.3
ENST00000376520.4
TLE4
transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
chr3_-_15374033 0.05 ENST00000253688.5
ENST00000383791.3
SH3BP5
SH3-domain binding protein 5 (BTK-associated)
chr12_+_50135588 0.05 ENST00000423828.1
ENST00000550445.1
TMBIM6
transmembrane BAX inhibitor motif containing 6
chr2_+_42396472 0.05 ENST00000318522.5
ENST00000402711.2
EML4
echinoderm microtubule associated protein like 4
chr12_+_68042495 0.05 ENST00000344096.3
DYRK2
dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 2
chr6_+_105404899 0.05 ENST00000345080.4
LIN28B
lin-28 homolog B (C. elegans)
chr13_-_50367057 0.05 ENST00000261667.3
KPNA3
karyopherin alpha 3 (importin alpha 4)
chr10_-_27149792 0.04 ENST00000376140.3
ENST00000376170.4
ABI1
abl-interactor 1
chr1_-_154842741 0.04 ENST00000271915.4
KCNN3
potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3
chrX_+_16737718 0.04 ENST00000380155.3
SYAP1
synapse associated protein 1
chr1_-_39339777 0.04 ENST00000397572.2
MYCBP
MYC binding protein
chrX_+_136648297 0.04 ENST00000287538.5
ZIC3
Zic family member 3
chr9_+_96793076 0.04 ENST00000375360.3
PTPDC1
protein tyrosine phosphatase domain containing 1
chr17_-_36762095 0.04 ENST00000578925.1
ENST00000264659.7
SRCIN1
SRC kinase signaling inhibitor 1
chrY_+_15016725 0.04 ENST00000336079.3
DDX3Y
DEAD (Asp-Glu-Ala-Asp) box helicase 3, Y-linked
chr14_+_29234870 0.04 ENST00000382535.3
FOXG1
forkhead box G1
chr14_-_99737565 0.03 ENST00000357195.3
BCL11B
B-cell CLL/lymphoma 11B (zinc finger protein)
chr14_-_61116168 0.03 ENST00000247182.6
SIX1
SIX homeobox 1
chr2_+_176981307 0.03 ENST00000249501.4
HOXD10
homeobox D10
chr10_+_98592009 0.03 ENST00000540664.1
ENST00000371103.3
LCOR
ligand dependent nuclear receptor corepressor
chr14_-_21737610 0.03 ENST00000320084.7
ENST00000449098.1
ENST00000336053.6
HNRNPC
heterogeneous nuclear ribonucleoprotein C (C1/C2)
chr1_+_145611010 0.03 ENST00000369291.5
RNF115
ring finger protein 115
chr10_+_11206925 0.03 ENST00000354440.2
ENST00000315874.4
ENST00000427450.1
CELF2
CUGBP, Elav-like family member 2
chr9_-_19786926 0.03 ENST00000341998.2
ENST00000286344.3
SLC24A2
solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
chr20_+_51588873 0.03 ENST00000371497.5
TSHZ2
teashirt zinc finger homeobox 2
chr12_-_99548270 0.03 ENST00000546568.1
ENST00000332712.7
ENST00000546960.1
ANKS1B
ankyrin repeat and sterile alpha motif domain containing 1B
chr1_+_231297798 0.03 ENST00000444294.3
TRIM67
tripartite motif containing 67
chr5_+_60628074 0.03 ENST00000252744.5
ZSWIM6
zinc finger, SWIM-type containing 6
chr8_+_42752053 0.03 ENST00000307602.4
HOOK3
hook microtubule-tethering protein 3
chr15_-_41408409 0.03 ENST00000361937.3
INO80
INO80 complex subunit
chr14_-_105487381 0.03 ENST00000392590.3
ENST00000336219.3
CDCA4
cell division cycle associated 4
chr8_+_58907104 0.03 ENST00000361488.3
FAM110B
family with sequence similarity 110, member B
chr3_+_29322803 0.03 ENST00000396583.3
ENST00000383767.2
RBMS3
RNA binding motif, single stranded interacting protein 3
chr5_-_131132614 0.03 ENST00000307968.7
ENST00000307954.8
FNIP1
folliculin interacting protein 1
chr15_+_44829255 0.02 ENST00000261868.5
ENST00000424492.3
EIF3J
eukaryotic translation initiation factor 3, subunit J
chr1_+_43148059 0.02 ENST00000321358.7
ENST00000332220.6
YBX1
Y box binding protein 1
chr17_-_5389477 0.02 ENST00000572834.1
ENST00000570848.1
ENST00000571971.1
ENST00000158771.4
DERL2
derlin 2
chr8_+_11561660 0.02 ENST00000526716.1
ENST00000335135.4
ENST00000528027.1
GATA4
GATA binding protein 4
chr7_-_44924939 0.02 ENST00000395699.2
PURB
purine-rich element binding protein B
chr16_-_46655538 0.02 ENST00000303383.3
SHCBP1
SHC SH2-domain binding protein 1
chr3_-_71774516 0.02 ENST00000425534.3
EIF4E3
eukaryotic translation initiation factor 4E family member 3
chr9_-_23821273 0.02 ENST00000380110.4
ELAVL2
ELAV like neuron-specific RNA binding protein 2
chr2_-_80531824 0.02 ENST00000295057.3
LRRTM1
leucine rich repeat transmembrane neuronal 1
chr10_-_89577910 0.02 ENST00000308448.7
ENST00000541004.1
ATAD1
ATPase family, AAA domain containing 1
chr7_-_106301405 0.02 ENST00000523505.1
CCDC71L
coiled-coil domain containing 71-like
chr11_-_118047376 0.02 ENST00000278947.5
SCN2B
sodium channel, voltage-gated, type II, beta subunit
chr15_+_101142722 0.01 ENST00000332783.7
ENST00000558747.1
ENST00000343276.4
ASB7
ankyrin repeat and SOCS box containing 7
chr9_-_72374848 0.01 ENST00000377200.5
ENST00000340434.4
ENST00000472967.2
PTAR1
protein prenyltransferase alpha subunit repeat containing 1
chr6_+_163835669 0.01 ENST00000453779.2
ENST00000275262.7
ENST00000392127.2
ENST00000361752.3
QKI
QKI, KH domain containing, RNA binding
chr8_-_67579418 0.01 ENST00000310421.4
VCPIP1
valosin containing protein (p97)/p47 complex interacting protein 1
chr17_+_29718642 0.01 ENST00000325874.8
RAB11FIP4
RAB11 family interacting protein 4 (class II)
chr1_-_39347255 0.01 ENST00000454994.2
ENST00000357771.3
GJA9
gap junction protein, alpha 9, 59kDa
chr19_-_7293942 0.01 ENST00000341500.5
ENST00000302850.5
INSR
insulin receptor
chr18_-_21977748 0.01 ENST00000399441.4
ENST00000319481.3
OSBPL1A
oxysterol binding protein-like 1A
chr1_-_108507631 0.01 ENST00000527011.1
ENST00000370056.4
VAV3
vav 3 guanine nucleotide exchange factor
chr2_-_174830430 0.01 ENST00000310015.6
ENST00000455789.2
SP3
Sp3 transcription factor
chr3_-_15563229 0.01 ENST00000383786.5
ENST00000383787.2
ENST00000383785.2
ENST00000383788.5
ENST00000603808.1
COLQ
collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase
chr16_-_4897266 0.01 ENST00000591451.1
ENST00000436648.5
ENST00000381983.3
ENST00000588297.1
ENST00000321919.9
GLYR1
glyoxylate reductase 1 homolog (Arabidopsis)
chr3_-_72496035 0.01 ENST00000477973.2
RYBP
RING1 and YY1 binding protein
chr6_+_133562472 0.01 ENST00000430974.2
ENST00000367895.5
ENST00000355167.3
ENST00000355286.6
EYA4
eyes absent homolog 4 (Drosophila)
chr14_-_27066636 0.00 ENST00000267422.7
ENST00000344429.5
ENST00000574031.1
ENST00000465357.2
ENST00000547619.1
NOVA1
neuro-oncological ventral antigen 1
chr22_+_21771656 0.00 ENST00000407464.2
HIC2
hypermethylated in cancer 2
chr7_+_114055052 0.00 ENST00000462331.1
ENST00000408937.3
ENST00000403559.4
ENST00000350908.4
ENST00000393498.2
ENST00000393495.3
ENST00000378237.3
ENST00000393489.3
FOXP2
forkhead box P2
chr5_+_56469775 0.00 ENST00000424459.3
GPBP1
GC-rich promoter binding protein 1
chr3_+_89156674 0.00 ENST00000336596.2
EPHA3
EPH receptor A3
chr13_+_100258907 0.00 ENST00000376355.3
ENST00000376360.1
ENST00000444838.2
ENST00000376354.1
ENST00000339105.4
CLYBL
citrate lyase beta like
chr1_-_21113105 0.00 ENST00000375000.1
ENST00000419490.1
ENST00000414993.1
ENST00000443615.1
ENST00000312239.5
HP1BP3
heterochromatin protein 1, binding protein 3
chr10_-_75255724 0.00 ENST00000342558.3
ENST00000360663.5
ENST00000394829.2
ENST00000394828.2
ENST00000394822.2
PPP3CB
protein phosphatase 3, catalytic subunit, beta isozyme
chr8_+_17013515 0.00 ENST00000262096.8
ZDHHC2
zinc finger, DHHC-type containing 2
chr4_-_66536057 0.00 ENST00000273854.3
EPHA5
EPH receptor A5

Network of associatons between targets according to the STRING database.

First level regulatory network of UAAGACG

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0060720 spongiotrophoblast cell proliferation(GO:0060720) regulation of spongiotrophoblast cell proliferation(GO:0060721) cell proliferation involved in embryonic placenta development(GO:0060722) regulation of cell proliferation involved in embryonic placenta development(GO:0060723)
0.0 0.2 GO:0010961 cellular magnesium ion homeostasis(GO:0010961)
0.0 0.2 GO:0060574 intestinal epithelial cell maturation(GO:0060574)
0.0 0.2 GO:0035087 siRNA loading onto RISC involved in RNA interference(GO:0035087)
0.0 0.3 GO:0001542 ovulation from ovarian follicle(GO:0001542)
0.0 0.1 GO:1905075 proepicardium development(GO:0003342) septum transversum development(GO:0003343) occluding junction disassembly(GO:1905071) regulation of occluding junction disassembly(GO:1905073) positive regulation of occluding junction disassembly(GO:1905075)
0.0 0.0 GO:0003285 septum secundum development(GO:0003285)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0070557 PCNA-p21 complex(GO:0070557)
0.0 0.2 GO:0035068 micro-ribonucleoprotein complex(GO:0035068)
0.0 0.1 GO:0044308 axonal spine(GO:0044308)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0098808 mRNA cap binding(GO:0098808)
0.1 0.2 GO:0019912 cyclin-dependent protein kinase activating kinase activity(GO:0019912)
0.0 0.1 GO:0050510 N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase activity(GO:0050510)
0.0 0.2 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.3 GO:0035259 glucocorticoid receptor binding(GO:0035259)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 SA G2 AND M PHASES Cdc25 activates the cdc2/cyclin B complex to induce the G2/M transition.