Inflammatory response time course, HUVEC (Wada et al., 2009)
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
XBP1 | hg19_v2_chr22_-_29196546_29196585 | 0.39 | 5.2e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr5_-_121413974 Show fit | 4.99 |
ENST00000231004.4
|
lysyl oxidase |
|
chr9_+_35732312 Show fit | 4.22 |
ENST00000353704.2
|
cAMP responsive element binding protein 3 |
|
chr11_+_69455855 Show fit | 3.43 |
ENST00000227507.2
ENST00000536559.1 |
cyclin D1 |
|
chr8_+_104384616 Show fit | 3.21 |
ENST00000520337.1
|
collagen triple helix repeat containing 1 |
|
chr6_+_116692102 Show fit | 3.00 |
ENST00000359564.2
|
dermatan sulfate epimerase |
|
chr20_-_62199427 Show fit | 2.87 |
ENST00000427522.2
|
helicase with zinc finger 2, transcriptional coactivator |
|
chr1_-_144932464 Show fit | 2.85 |
ENST00000479408.2
|
phosphodiesterase 4D interacting protein |
|
chr2_-_69614373 Show fit | 2.70 |
ENST00000361060.5
ENST00000357308.4 |
glutamine--fructose-6-phosphate transaminase 1 |
|
chr3_+_105086056 Show fit | 2.61 |
ENST00000472644.2
|
activated leukocyte cell adhesion molecule |
|
chr1_+_101361782 Show fit | 2.60 |
ENST00000357650.4
|
solute carrier family 30 (zinc transporter), member 7 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.2 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER(GO:0006890) |
0.4 | 5.0 | GO:0048251 | elastic fiber assembly(GO:0048251) |
0.8 | 4.2 | GO:0006990 | positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) |
0.4 | 4.0 | GO:0070141 | response to UV-A(GO:0070141) |
0.1 | 4.0 | GO:0048846 | axon extension involved in axon guidance(GO:0048846) neuron projection extension involved in neuron projection guidance(GO:1902284) |
0.4 | 3.6 | GO:0060052 | neurofilament cytoskeleton organization(GO:0060052) |
0.0 | 3.4 | GO:0036498 | IRE1-mediated unfolded protein response(GO:0036498) |
0.5 | 3.2 | GO:0043932 | ossification involved in bone remodeling(GO:0043932) |
0.1 | 3.1 | GO:0071577 | zinc II ion transmembrane transport(GO:0071577) |
0.1 | 3.0 | GO:0090110 | cargo loading into COPII-coated vesicle(GO:0090110) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 15.1 | GO:0000139 | Golgi membrane(GO:0000139) |
0.0 | 7.2 | GO:0030016 | myofibril(GO:0030016) |
0.2 | 4.1 | GO:0030127 | COPII vesicle coat(GO:0030127) |
0.1 | 3.4 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
0.0 | 3.2 | GO:0030176 | integral component of endoplasmic reticulum membrane(GO:0030176) |
1.0 | 3.1 | GO:0060053 | neurofilament cytoskeleton(GO:0060053) |
0.0 | 3.0 | GO:0005581 | collagen trimer(GO:0005581) |
0.0 | 2.9 | GO:0031201 | SNARE complex(GO:0031201) |
0.2 | 2.8 | GO:0030126 | COPI vesicle coat(GO:0030126) |
0.0 | 2.7 | GO:0032587 | ruffle membrane(GO:0032587) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 5.7 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
1.0 | 5.0 | GO:0004720 | protein-lysine 6-oxidase activity(GO:0004720) |
0.2 | 4.2 | GO:0035497 | cAMP response element binding(GO:0035497) |
0.1 | 4.1 | GO:0017147 | Wnt-protein binding(GO:0017147) |
0.1 | 3.4 | GO:0070064 | proline-rich region binding(GO:0070064) |
0.1 | 3.2 | GO:0005086 | ARF guanyl-nucleotide exchange factor activity(GO:0005086) |
0.1 | 3.2 | GO:0005484 | SNAP receptor activity(GO:0005484) |
0.1 | 3.1 | GO:0043014 | alpha-tubulin binding(GO:0043014) |
0.6 | 3.0 | GO:0047757 | chondroitin-glucuronate 5-epimerase activity(GO:0047757) |
0.1 | 2.7 | GO:0008483 | transaminase activity(GO:0008483) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 4.2 | ST G ALPHA S PATHWAY | G alpha s Pathway |
0.1 | 4.1 | PID WNT SIGNALING PATHWAY | Wnt signaling network |
0.1 | 4.0 | PID LIS1 PATHWAY | Lissencephaly gene (LIS1) in neuronal migration and development |
0.0 | 4.0 | NABA ECM AFFILIATED | Genes encoding proteins affiliated structurally or functionally to extracellular matrix proteins |
0.0 | 4.0 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.0 | 3.7 | PID NOTCH PATHWAY | Notch signaling pathway |
0.2 | 3.4 | PID P38 GAMMA DELTA PATHWAY | Signaling mediated by p38-gamma and p38-delta |
0.0 | 2.9 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
0.0 | 1.7 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 1.5 | PID VEGFR1 2 PATHWAY | Signaling events mediated by VEGFR1 and VEGFR2 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.8 | REACTOME ACTIVATION OF CHAPERONE GENES BY XBP1S | Genes involved in Activation of Chaperone Genes by XBP1(S) |
0.2 | 5.3 | REACTOME ZINC TRANSPORTERS | Genes involved in Zinc transporters |
0.0 | 4.4 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
0.1 | 4.3 | REACTOME PRE NOTCH TRANSCRIPTION AND TRANSLATION | Genes involved in Pre-NOTCH Transcription and Translation |
0.1 | 4.1 | REACTOME ANTIGEN PRESENTATION FOLDING ASSEMBLY AND PEPTIDE LOADING OF CLASS I MHC | Genes involved in Antigen Presentation: Folding, assembly and peptide loading of class I MHC |
0.0 | 3.1 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 2.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
0.1 | 2.4 | REACTOME METABOLISM OF POLYAMINES | Genes involved in Metabolism of polyamines |
0.1 | 2.3 | REACTOME SYNTHESIS OF SUBSTRATES IN N GLYCAN BIOSYTHESIS | Genes involved in Synthesis of substrates in N-glycan biosythesis |
0.0 | 2.1 | REACTOME AMINE LIGAND BINDING RECEPTORS | Genes involved in Amine ligand-binding receptors |