hg19_v2_chr1_-_173020056_173020103	1.32195	BRCA1	ENST00000239468.2|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18 	ENST00000404377.3|TNFSF18|ENSG00000120337.7|tumor necrosis factor (ligand) superfamily, member 18
hg19_v2_chr15_+_67430339_67430366	1.10648	BRCA1	ENST00000439724.3|SMAD3|ENSG00000166949.11|SMAD family member 3
hg19_v2_chr2_+_108994633_108994650	0.799286	BRCA1	ENST00000409309.3|SULT1C4|ENSG00000198075.5|sulfotransferase family, cytosolic, 1C, member 4
hg19_v2_chr2_+_108994466_108994485	0.753892	BRCA1	ENST00000272452.2|SULT1C4|ENSG00000198075.5|sulfotransferase family, cytosolic, 1C, member 4
hg19_v2_chr17_-_41739283_41739322	0.704485	BRCA1	ENST00000393661.2|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000318579.4|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr17_-_41738931_41739040	0.687218	BRCA1	ENST00000329168.3|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1 	ENST00000549132.1|MEOX1|ENSG00000005102.8|mesenchyme homeobox 1
hg19_v2_chr7_+_44646162_44646176	0.475361	BRCA1	ENST00000439616.2|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
hg19_v2_chr1_-_160232312_160232323	0.446761	BRCA1	ENST00000440682.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr12_-_117318788_117318893	0.433839	BRCA1	ENST00000550505.1|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr17_+_74372662_74372742	0.414201	BRCA1	ENST00000591651.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1 	ENST00000545180.1|SPHK1|ENSG00000176170.9|sphingosine kinase 1
hg19_v2_chr8_+_22022800_22022869	0.379057	BRCA1	ENST00000397814.3|BMP1|ENSG00000168487.13|bone morphogenetic protein 1
hg19_v2_chr10_-_36813162_36813162	0.378191	BRCA1	ENST00000440465.1|NAMPTL|ENSG00000229644.4|nicotinamide phosphoribosyltransferase-like
hg19_v2_chr11_-_119234876_119234929	0.349808	BRCA1	ENST00000525735.1|USP2|ENSG00000036672.11|ubiquitin specific peptidase 2
hg19_v2_chr10_+_28822636_28822692	0.348125	BRCA1	ENST00000442148.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil 	ENST00000448193.1|WAC|ENSG00000095787.17|WW domain containing adaptor with coiled-coil
hg19_v2_chr3_-_127455200_127455223	0.328785	BRCA1	ENST00000398101.3|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr18_+_19749386_19749404	0.321427	BRCA1	ENST00000269216.3|GATA6|ENSG00000141448.4|GATA binding protein 6
hg19_v2_chr12_-_95510743_95510753	0.312543	BRCA1	ENST00000551521.1|FGD6|ENSG00000180263.9|FYVE, RhoGEF and PH domain containing 6
hg19_v2_chr2_+_203879568_203879611	0.280743	BRCA1	ENST00000449802.1|NBEAL1|ENSG00000144426.14|neurobeachin-like 1
hg19_v2_chr8_-_72459885_72459896	0.255576	BRCA1	ENST00000523987.1|RP11-1102P16.1|ENSG00000253379.1|Uncharacterized protein
hg19_v2_chr10_+_104404644_104404726	0.253332	BRCA1	ENST00000462202.2|TRIM8|ENSG00000171206.9|tripartite motif containing 8
hg19_v2_chr18_+_55888767_55888809	0.243682	BRCA1	ENST00000431212.2|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000586268.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase 	ENST00000587190.1|NEDD4L|ENSG00000049759.12|neural precursor cell expressed, developmentally down-regulated 4-like, E3 ubiquitin protein ligase
hg19_v2_chr5_+_139027877_139027918	0.223215	BRCA1	ENST00000302517.3|CXXC5|ENSG00000171604.7|CXXC finger protein 5
hg19_v2_chr19_+_46850320_46850365	0.218252	BRCA1	ENST00000391919.1|PPP5C|ENSG00000011485.10|protein phosphatase 5, catalytic subunit
hg19_v2_chr9_+_135457530_135457572	0.211417	BRCA1	ENST00000263610.2|BARHL1|ENSG00000125492.5|BarH-like homeobox 1
hg19_v2_chr19_+_46850251_46850285	0.203717	BRCA1	ENST00000012443.4|PPP5C|ENSG00000011485.10|protein phosphatase 5, catalytic subunit
hg19_v2_chr18_-_23671139_23671190	0.1869	BRCA1	ENST00000579061.1|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18 	ENST00000542420.2|SS18|ENSG00000141380.9|synovial sarcoma translocation, chromosome 18
hg19_v2_chr19_+_55888186_55888204	0.183236	BRCA1	ENST00000291934.3|TMEM190|ENSG00000160472.4|transmembrane protein 190
hg19_v2_chr6_+_42981922_42982047	0.182236	BRCA1	ENST00000326974.4|KLHDC3|ENSG00000124702.13|kelch domain containing 3 	ENST00000244670.8|KLHDC3|ENSG00000124702.13|kelch domain containing 3
hg19_v2_chr17_-_27230035_27230105	0.182063	BRCA1	ENST00000378895.4|DHRS13|ENSG00000167536.9|dehydrogenase/reductase (SDR family) member 13 	ENST00000394901.3|DHRS13|ENSG00000167536.9|dehydrogenase/reductase (SDR family) member 13
hg19_v2_chr10_-_95504_95504	0.181667	BRCA1	ENST00000447903.2|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr7_+_44646177_44646201	0.179422	BRCA1	ENST00000443864.2|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000447398.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000449767.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide) 	ENST00000419661.1|OGDH|ENSG00000105953.10|oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)
hg19_v2_chr1_+_10271674_10271674	0.17444	BRCA1	ENST00000377086.1|KIF1B|ENSG00000054523.12|kinesin family member 1B
hg19_v2_chr6_+_12717892_12717903	0.172495	BRCA1	ENST00000379350.1|PHACTR1|ENSG00000112137.12|phosphatase and actin regulator 1
hg19_v2_chrX_+_10124977_10125036	0.166399	BRCA1	ENST00000380833.4|CLCN4|ENSG00000073464.7|chloride channel, voltage-sensitive 4
hg19_v2_chr17_+_36584662_36584730	0.157828	BRCA1	ENST00000431231.2|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23 	ENST00000437668.3|ARHGAP23|ENSG00000225485.3|Rho GTPase activating protein 23
hg19_v2_chr8_-_81083341_81083435	0.151911	BRCA1	ENST00000519303.2|TPD52|ENSG00000076554.11|tumor protein D52
hg19_v2_chr17_-_60142609_60142657	0.149662	BRCA1	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr2_-_158182410_158182446	0.14811	BRCA1	ENST00000419116.2|ERMN|ENSG00000136541.10|ermin, ERM-like protein 	ENST00000410096.1|ERMN|ENSG00000136541.10|ermin, ERM-like protein
hg19_v2_chr19_-_48059113_48059113	0.147464	BRCA1	ENST00000391901.3|ZNF541|ENSG00000118156.8|zinc finger protein 541 	ENST00000314121.4|ZNF541|ENSG00000118156.8|zinc finger protein 541 	ENST00000448976.1|ZNF541|ENSG00000118156.8|zinc finger protein 541
hg19_v2_chr11_-_71823266_71823325	0.14378	BRCA1	ENST00000538919.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000539395.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15 	ENST00000542531.1|ANAPC15|ENSG00000110200.4|anaphase promoting complex subunit 15
hg19_v2_chrX_-_70288234_70288291	0.128899	BRCA1	ENST00000276105.3|SNX12|ENSG00000147164.7|sorting nexin 12 	ENST00000374274.3|SNX12|ENSG00000147164.7|sorting nexin 12
hg19_v2_chr4_+_619347_619382	0.111523	BRCA1	ENST00000255622.6|PDE6B|ENSG00000133256.8|phosphodiesterase 6B, cGMP-specific, rod, beta
hg19_v2_chr10_-_95209_95241	0.0981361	BRCA1	ENST00000332708.5|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII 	ENST00000309812.4|TUBB8|ENSG00000173876.9|tubulin, beta 8 class VIII
hg19_v2_chr19_-_40324767_40324841	0.0978498	BRCA1	ENST00000601972.1|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000430012.2|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000323039.5|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B 	ENST00000348817.3|DYRK1B|ENSG00000105204.9|dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1B
hg19_v2_chr12_-_12491608_12491640	0.0966801	BRCA1	ENST00000545735.1|MANSC1|ENSG00000111261.9|MANSC domain containing 1
hg19_v2_chr12_-_117319236_117319252	0.0962768	BRCA1	ENST00000257572.5|HRK|ENSG00000135116.5|harakiri, BCL2 interacting protein (contains only BH3 domain)
hg19_v2_chr13_+_30002846_30002862	0.0948788	BRCA1	ENST00000542829.1|MTUS2|ENSG00000132938.14|microtubule associated tumor suppressor candidate 2
hg19_v2_chr19_+_45394477_45394546	0.0924525	BRCA1	ENST00000252487.5|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000405636.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000592434.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000426677.2|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast) 	ENST00000589649.1|TOMM40|ENSG00000130204.8|translocase of outer mitochondrial membrane 40 homolog (yeast)
hg19_v2_chr1_-_160232291_160232304	0.0854756	BRCA1	ENST00000368074.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000447377.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr1_-_160232197_160232284	0.0845355	BRCA1	ENST00000419626.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000610139.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000475733.1|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000407642.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000368073.3|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8 	ENST00000326837.2|DCAF8|ENSG00000132716.14|DDB1 and CUL4 associated factor 8
hg19_v2_chr5_-_68665084_68665143	0.0792919	BRCA1	ENST00000509462.1|TAF9|ENSG00000085231.9|TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 32kDa
hg19_v2_chr2_-_179914760_179914884	0.0766243	BRCA1	ENST00000420890.2|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000409284.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000443758.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141 	ENST00000446116.1|CCDC141|ENSG00000163492.9|coiled-coil domain containing 141
hg19_v2_chr20_-_48530230_48530276	0.0659045	BRCA1	ENST00000422556.1|SPATA2|ENSG00000158480.6|spermatogenesis associated 2
hg19_v2_chr2_+_223725652_223725705	0.0630721	BRCA1	ENST00000357430.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3 	ENST00000392066.3|ACSL3|ENSG00000123983.9|acyl-CoA synthetase long-chain family member 3
hg19_v2_chr8_+_22022653_22022765	0.0594425	BRCA1	ENST00000354870.5|BMP1|ENSG00000168487.13|bone morphogenetic protein 1 	ENST00000397816.3|BMP1|ENSG00000168487.13|bone morphogenetic protein 1 	ENST00000306349.8|BMP1|ENSG00000168487.13|bone morphogenetic protein 1
hg19_v2_chr6_-_66417107_66417125	0.0558479	BRCA1	ENST00000370621.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000370618.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000503581.1|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000393380.2|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila)
hg19_v2_chr15_-_58358607_58358621	0.0557972	BRCA1	ENST00000249750.4|ALDH1A2|ENSG00000128918.10|aldehyde dehydrogenase 1 family, member A2
hg19_v2_chrX_+_49644470_49644470	0.0519641	BRCA1	ENST00000508866.2|USP27X|ENSG00000242013.4|ubiquitin specific peptidase 27, X-linked
hg19_v2_chr7_+_99717230_99717321	0.0514319	BRCA1	ENST00000262932.3|CNPY4|ENSG00000166997.3|canopy FGF signaling regulator 4
hg19_v2_chr12_-_122879969_122879982	0.0500055	BRCA1	ENST00000540304.1|CLIP1|ENSG00000130779.15|CAP-GLY domain containing linker protein 1
hg19_v2_chr8_-_16859690_16859861	0.047336	BRCA1	ENST00000180166.5|FGF20|ENSG00000078579.8|fibroblast growth factor 20
hg19_v2_chr10_-_69597810_69597827	0.0466263	BRCA1	ENST00000483798.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr7_-_99716952_99717021	0.0444083	BRCA1	ENST00000523306.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000344095.4|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000417349.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000493322.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000520135.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000418432.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000460673.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452041.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000452438.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000451699.1|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa 	ENST00000453269.2|TAF6|ENSG00000106290.10|TAF6 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 80kDa
hg19_v2_chr17_+_21730180_21730256	0.0441136	BRCA1	ENST00000584398.1|UBBP4|ENSG00000263563.1|ubiquitin B pseudogene 4
hg19_v2_chr7_-_23510086_23510118	0.043414	BRCA1	ENST00000258729.3|IGF2BP3|ENSG00000136231.9|insulin-like growth factor 2 mRNA binding protein 3
hg19_v2_chr14_+_103058948_103059005	0.0412764	BRCA1	ENST00000262241.6|RCOR1|ENSG00000089902.8|REST corepressor 1
hg19_v2_chr6_-_137314371_137314394	0.037006	BRCA1	ENST00000432330.1|RP11-55K22.5|ENSG00000225391.1|RP11-55K22.5	ENST00000418699.1|RP11-55K22.5|ENSG00000225391.1|RP11-55K22.5
hg19_v2_chr20_+_52105495_52105495	0.0369184	BRCA1	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chr14_-_94942548_94942566	0.0325661	BRCA1	ENST00000298845.7|SERPINA9|ENSG00000170054.10|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
hg19_v2_chr20_+_31749574_31749588	0.0314552	BRCA1	ENST00000253362.2|BPIFA2|ENSG00000131050.6|BPI fold containing family A, member 2
hg19_v2_chr15_-_88799948_88799978	0.0295006	BRCA1	ENST00000394480.2|NTRK3|ENSG00000140538.12|neurotrophic tyrosine kinase, receptor, type 3
hg19_v2_chr1_-_227505289_227505415	0.0288525	BRCA1	ENST00000366765.3|CDC42BPA|ENSG00000143776.14|CDC42 binding protein kinase alpha (DMPK-like)
hg19_v2_chr6_+_33172407_33172419	0.0284451	BRCA1	ENST00000374662.3|HSD17B8|ENSG00000204228.3|hydroxysteroid (17-beta) dehydrogenase 8
hg19_v2_chr5_+_140079919_140080042	0.0256888	BRCA1	ENST00000274712.3|ZMAT2|ENSG00000146007.6|zinc finger, matrin-type 2
hg19_v2_chr6_+_123100620_123100763	0.0242137	BRCA1	ENST00000368444.3|FABP7|ENSG00000164434.7|fatty acid binding protein 7, brain
hg19_v2_chr14_-_94942527_94942540	0.0237894	BRCA1	ENST00000448305.2|SERPINA9|ENSG00000170054.10|serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 9
hg19_v2_chr2_-_134326009_134326053	0.0177206	BRCA1	ENST00000409261.1|NCKAP5|ENSG00000176771.11|NCK-associated protein 5 	ENST00000409213.1|NCKAP5|ENSG00000176771.11|NCK-associated protein 5
hg19_v2_chr1_-_232598163_232598163	0.0145175	BRCA1	ENST00000308942.4|SIPA1L2|ENSG00000116991.6|signal-induced proliferation-associated 1 like 2
hg19_v2_chr17_-_42019836_42019844	0.0139692	BRCA1	ENST00000225992.3|PPY|ENSG00000108849.3|pancreatic polypeptide
hg19_v2_chr10_-_102289611_102289757	0.00777378	BRCA1	ENST00000299166.4|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000370320.4|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000535773.1|SEC31B|ENSG00000075826.12|SEC31 homolog B (S. cerevisiae) 	ENST00000531258.1|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa 	ENST00000370322.1|NDUFB8|ENSG00000166136.11|NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 8, 19kDa
hg19_v2_chr13_-_50018241_50018277	0.00750452	BRCA1	ENST00000409308.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr12_-_49418407_49418407	0.00587733	BRCA1	ENST00000526209.1|KMT2D|ENSG00000167548.10|lysine (K)-specific methyltransferase 2D
hg19_v2_chr14_-_75179774_75179818	0.00445118	BRCA1	ENST00000555249.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000556202.1|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1 	ENST00000338772.5|AC007956.1|ENSG00000214670.3|Full-length cDNA 5-PRIME end of clone CS0CAP004YO05 of Thymus of Homo sapiens (human); Uncharacterized protein  	ENST00000356357.4|AREL1|ENSG00000119682.12|apoptosis resistant E3 ubiquitin protein ligase 1
hg19_v2_chr3_+_184056614_184056641	0.00224567	BRCA1	ENST00000453072.1|FAM131A|ENSG00000175182.9|family with sequence similarity 131, member A
hg19_v2_chr4_-_48782259_48782335	0.00218152	BRCA1	ENST00000507711.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000358350.4|FRYL|ENSG00000075539.9|FRY-like 	ENST00000537810.1|FRYL|ENSG00000075539.9|FRY-like 	ENST00000264319.7|FRYL|ENSG00000075539.9|FRY-like
hg19_v2_chr3_-_176914238_176914277	0.000892169	BRCA1	ENST00000430069.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1 	ENST00000428970.1|TBL1XR1|ENSG00000177565.11|transducin (beta)-like 1 X-linked receptor 1
