hg19_v2_chr12_+_20522179_20522203	0.143355	CUACAGU	ENST00000359062.3|PDE3A|ENSG00000172572.6|phosphodiesterase 3A, cGMP-inhibited
hg19_v2_chr1_+_61547894_61547980	0.0876103	CUACAGU	ENST00000403491.3|NFIA|ENSG00000162599.11|nuclear factor I/A
hg19_v2_chr4_+_134070439_134070470	0.0532474	CUACAGU	ENST00000264360.5|PCDH10|ENSG00000138650.7|protocadherin 10
hg19_v2_chr9_-_14314066_14314075	0.0506942	CUACAGU	ENST00000397575.3|NFIB|ENSG00000147862.10|nuclear factor I/B
hg19_v2_chr19_+_10527449_10527619	0.0481726	CUACAGU	ENST00000592685.1|PDE4A|ENSG00000065989.11|phosphodiesterase 4A, cAMP-specific 	ENST00000380702.2|PDE4A|ENSG00000065989.11|phosphodiesterase 4A, cAMP-specific
hg19_v2_chr6_-_16761678_16761721	0.0433943	CUACAGU	ENST00000244769.4|ATXN1|ENSG00000124788.13|ataxin 1 	ENST00000436367.1|ATXN1|ENSG00000124788.13|ataxin 1
hg19_v2_chr11_+_86748863_86748948	0.0399831	CUACAGU	ENST00000340353.7|TMEM135|ENSG00000166575.12|transmembrane protein 135
hg19_v2_chr5_-_90679145_90679176	0.0377987	CUACAGU	ENST00000265138.3|ARRDC3|ENSG00000113369.4|arrestin domain containing 3
hg19_v2_chr12_+_93965451_93965494	0.037094	CUACAGU	ENST00000548537.1|SOCS2|ENSG00000120833.9|suppressor of cytokine signaling 2
hg19_v2_chr3_-_124774802_124774852	0.0348759	CUACAGU	ENST00000311127.4|HEG1|ENSG00000173706.8|heart development protein with EGF-like domains 1
hg19_v2_chrX_+_105066524_105066552	0.0312013	CUACAGU	ENST00000243300.9|NRK|ENSG00000123572.12|Nik related kinase 	ENST00000428173.2|NRK|ENSG00000123572.12|Nik related kinase
hg19_v2_chr4_-_99579733_99579789	0.0301539	CUACAGU	ENST00000305798.3|TSPAN5|ENSG00000168785.3|tetraspanin 5
hg19_v2_chr18_+_49866496_49866548	0.0260653	CUACAGU	ENST00000442544.2|DCC|ENSG00000187323.7|deleted in colorectal carcinoma
hg19_v2_chr15_+_39873268_39873294	0.0253607	CUACAGU	ENST00000397591.2|THBS1|ENSG00000137801.9|thrombospondin 1 	ENST00000260356.5|THBS1|ENSG00000137801.9|thrombospondin 1
hg19_v2_chr16_+_58497567_58497586	0.0247034	CUACAGU	ENST00000258187.5|NDRG4|ENSG00000103034.10|NDRG family member 4
hg19_v2_chr15_+_57210818_57210930	0.0246814	CUACAGU	ENST00000438423.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000267811.5|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000452095.2|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000559609.1|TCF12|ENSG00000140262.13|transcription factor 12 	ENST00000333725.5|TCF12|ENSG00000140262.13|transcription factor 12
hg19_v2_chr6_-_8064567_8064652	0.0223734	CUACAGU	ENST00000543936.1|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted 	ENST00000397457.2|BLOC1S5|ENSG00000188428.12|biogenesis of lysosomal organelles complex-1, subunit 5, muted
hg19_v2_chr16_-_10674528_10674555	0.0220385	CUACAGU	ENST00000359543.3|EMP2|ENSG00000213853.5|epithelial membrane protein 2
hg19_v2_chr8_-_71316021_71316068	0.0209283	CUACAGU	ENST00000452400.2|NCOA2|ENSG00000140396.8|nuclear receptor coactivator 2
hg19_v2_chr2_+_170683942_170683972	0.020864	CUACAGU	ENST00000272793.5|UBR3|ENSG00000144357.12|ubiquitin protein ligase E3 component n-recognin 3 (putative)
hg19_v2_chr1_-_156051789_156051838	0.0195625	CUACAGU	ENST00000532414.2|MEX3A|ENSG00000254726.2|mex-3 RNA binding family member A
hg19_v2_chr7_-_56119238_56119302	0.018786	CUACAGU	ENST00000275605.3|PSPH|ENSG00000146733.9|phosphoserine phosphatase 	ENST00000395471.3|PSPH|ENSG00000146733.9|phosphoserine phosphatase
hg19_v2_chr4_-_114682936_114683083	0.0183824	CUACAGU	ENST00000454265.2|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000429180.1|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000418639.2|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000394526.2|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta 	ENST00000296402.5|CAMK2D|ENSG00000145349.12|calcium/calmodulin-dependent protein kinase II delta
hg19_v2_chr2_-_160472952_160473080	0.0168327	CUACAGU	ENST00000541068.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000355831.2|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000343439.5|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B 	ENST00000392782.1|BAZ2B|ENSG00000123636.13|bromodomain adjacent to zinc finger domain, 2B
hg19_v2_chr12_+_19592602_19592648	0.0161177	CUACAGU	ENST00000398864.3|AEBP2|ENSG00000139154.10|AE binding protein 2 	ENST00000266508.9|AEBP2|ENSG00000139154.10|AE binding protein 2
hg19_v2_chr20_+_39657454_39657470	0.0148151	CUACAGU	ENST00000361337.2|TOP1|ENSG00000198900.5|topoisomerase (DNA) I
hg19_v2_chrX_-_77041685_77041716	0.0142688	CUACAGU	ENST00000373344.5|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked 	ENST00000395603.3|ATRX|ENSG00000085224.16|alpha thalassemia/mental retardation syndrome X-linked
hg19_v2_chr9_-_101471479_101471522	0.0133127	CUACAGU	ENST00000259455.2|GABBR2|ENSG00000136928.4|gamma-aminobutyric acid (GABA) B receptor, 2
hg19_v2_chr15_-_77363513_77363570	0.0132569	CUACAGU	ENST00000267970.4|TSPAN3|ENSG00000140391.10|tetraspanin 3
hg19_v2_chr3_-_114790179_114790222	0.0129512	CUACAGU	ENST00000462705.1|ZBTB20|ENSG00000181722.11|zinc finger and BTB domain containing 20
hg19_v2_chr18_-_53255766_53255860	0.0128981	CUACAGU	ENST00000566286.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000564999.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000566279.1|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000354452.3|TCF4|ENSG00000196628.9|transcription factor 4 	ENST00000356073.4|TCF4|ENSG00000196628.9|transcription factor 4
hg19_v2_chr10_-_11653753_11653806	0.012002	CUACAGU	ENST00000609104.1|USP6NL|ENSG00000148429.10|USP6 N-terminal like
hg19_v2_chr18_+_3451646_3451722	0.0118967	CUACAGU	ENST00000345133.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000330513.5|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1 	ENST00000549546.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chrX_-_25034065_25034088	0.0117584	CUACAGU	ENST00000379044.4|ARX|ENSG00000004848.6|aristaless related homeobox
hg19_v2_chr19_+_1249869_1249894	0.0112086	CUACAGU	ENST00000591446.2|MIDN|ENSG00000167470.8|midnolin
hg19_v2_chr1_+_87794150_87794172	0.0111359	CUACAGU	ENST00000370544.5|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr2_-_32264850_32264901	0.0103872	CUACAGU	ENST00000295066.3|DPY30|ENSG00000162961.9|dpy-30 homolog (C. elegans) 	ENST00000342166.5|DPY30|ENSG00000162961.9|dpy-30 homolog (C. elegans)
hg19_v2_chr15_-_79383102_79383127	0.010136	CUACAGU	ENST00000558480.2|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1 	ENST00000419573.3|RASGRF1|ENSG00000058335.11|Ras protein-specific guanine nucleotide-releasing factor 1
hg19_v2_chr8_-_67525473_67525518	0.0094379	CUACAGU	ENST00000522677.3|MYBL1|ENSG00000185697.12|v-myb avian myeloblastosis viral oncogene homolog-like 1
hg19_v2_chr11_+_92085262_92085262	0.00911652	CUACAGU	ENST00000298047.6|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000409404.2|FAT3|ENSG00000165323.11|FAT atypical cadherin 3 	ENST00000541502.1|FAT3|ENSG00000165323.11|FAT atypical cadherin 3
hg19_v2_chr1_-_225840747_225840860	0.00908591	CUACAGU	ENST00000366843.2|ENAH|ENSG00000154380.12|enabled homolog (Drosophila) 	ENST00000366844.3|ENAH|ENSG00000154380.12|enabled homolog (Drosophila)
hg19_v2_chr2_-_166651191_166651213	0.00875986	CUACAGU	ENST00000392701.3|GALNT3|ENSG00000115339.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3 (GalNAc-T3)
hg19_v2_chr5_-_127873659_127873735	0.00845263	CUACAGU	ENST00000262464.4|FBN2|ENSG00000138829.6|fibrillin 2
hg19_v2_chr2_+_191273052_191273121	0.0084335	CUACAGU	ENST00000417958.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000432036.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6 	ENST00000392328.1|MFSD6|ENSG00000151690.10|major facilitator superfamily domain containing 6
hg19_v2_chr2_+_181845298_181845378	0.00718926	CUACAGU	ENST00000410062.4|UBE2E3|ENSG00000170035.11|ubiquitin-conjugating enzyme E2E 3
hg19_v2_chr3_+_158991025_158991083	0.00700428	CUACAGU	ENST00000337808.6|IQCJ-SCHIP1|ENSG00000250588.2|IQCJ-SCHIP1 readthrough
hg19_v2_chr13_-_21476900_21476949	0.00682284	CUACAGU	ENST00000400602.2|XPO4|ENSG00000132953.12|exportin 4 	ENST00000255305.6|XPO4|ENSG00000132953.12|exportin 4
hg19_v2_chr2_-_166930131_166930149	0.00664665	CUACAGU	ENST00000303395.4|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000409050.1|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000423058.2|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit 	ENST00000375405.3|SCN1A|ENSG00000144285.11|sodium channel, voltage-gated, type I, alpha subunit
hg19_v2_chr1_+_199996702_199996732	0.00598743	CUACAGU	ENST00000367362.3|NR5A2|ENSG00000116833.9|nuclear receptor subfamily 5, group A, member 2
hg19_v2_chr3_+_159557637_159557650	0.00577887	CUACAGU	ENST00000445224.2|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chrX_-_114468605_114468640	0.00572794	CUACAGU	ENST00000538422.1|LRCH2|ENSG00000130224.10|leucine-rich repeats and calponin homology (CH) domain containing 2 	ENST00000317135.8|LRCH2|ENSG00000130224.10|leucine-rich repeats and calponin homology (CH) domain containing 2
hg19_v2_chr1_-_85156216_85156240	0.00565601	CUACAGU	ENST00000342203.3|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein 	ENST00000370612.4|SSX2IP|ENSG00000117155.12|synovial sarcoma, X breakpoint 2 interacting protein
hg19_v2_chr1_-_175712829_175712906	0.00561361	CUACAGU	ENST00000367674.2|TNR|ENSG00000116147.12|tenascin R
hg19_v2_chr2_-_38604398_38604436	0.00490012	CUACAGU	ENST00000443098.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000449130.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000378954.4|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000539122.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000419554.2|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000451483.1|ATL2|ENSG00000119787.9|atlastin GTPase 2 	ENST00000406122.1|ATL2|ENSG00000119787.9|atlastin GTPase 2
hg19_v2_chr12_+_57998595_57998621	0.00473364	CUACAGU	ENST00000337737.3|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000548198.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila) 	ENST00000551632.1|DTX3|ENSG00000178498.11|deltex homolog 3 (Drosophila)
hg19_v2_chr20_-_4982132_4982164	0.004067	CUACAGU	ENST00000338244.1|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2 	ENST00000424750.2|SLC23A2|ENSG00000089057.10|solute carrier family 23 (ascorbic acid transporter), member 2
hg19_v2_chr2_+_120517174_120517207	0.00391114	CUACAGU	ENST00000263708.2|PTPN4|ENSG00000088179.4|protein tyrosine phosphatase, non-receptor type 4 (megakaryocyte)
hg19_v2_chr18_-_5895954_5895954	0.00379246	CUACAGU	ENST00000581347.2|TMEM200C|ENSG00000206432.4|transmembrane protein 200C
hg19_v2_chrX_+_41192595_41192651	0.00338969	CUACAGU	ENST00000399959.2|DDX3X|ENSG00000215301.5|DEAD (Asp-Glu-Ala-Asp) box helicase 3, X-linked
hg19_v2_chr12_+_123237321_123237407	0.00315324	CUACAGU	ENST00000280557.6|DENR|ENSG00000139726.6|density-regulated protein 	ENST00000455982.2|DENR|ENSG00000139726.6|density-regulated protein
hg19_v2_chr6_+_4021554_4021656	0.0029061	CUACAGU	ENST00000337659.6|PRPF4B|ENSG00000112739.12|pre-mRNA processing factor 4B
hg19_v2_chr11_+_129939779_129939801	0.00278252	CUACAGU	ENST00000533195.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000533713.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000528499.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000539648.1|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2 	ENST00000263574.5|APLP2|ENSG00000084234.12|amyloid beta (A4) precursor-like protein 2
hg19_v2_chr12_+_67663056_67663067	0.00276762	CUACAGU	ENST00000545606.1|CAND1|ENSG00000111530.8|cullin-associated and neddylation-dissociated 1
hg19_v2_chr8_-_41909496_41909512	0.00250022	CUACAGU	ENST00000265713.2|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000406337.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000396930.3|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000485568.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A 	ENST00000426524.1|KAT6A|ENSG00000083168.5|K(lysine) acetyltransferase 6A
hg19_v2_chr7_+_20370746_20370778	0.00228699	CUACAGU	ENST00000222573.4|ITGB8|ENSG00000105855.5|integrin, beta 8
hg19_v2_chr1_+_29563011_29563151	0.00224305	CUACAGU	ENST00000345512.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000373779.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000356870.3|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000323874.8|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000428026.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U 	ENST00000460170.2|PTPRU|ENSG00000060656.15|protein tyrosine phosphatase, receptor type, U
hg19_v2_chr1_+_2985760_2985775	0.00216779	CUACAGU	ENST00000378391.2|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000514189.1|PRDM16|ENSG00000142611.12|PR domain containing 16 	ENST00000270722.5|PRDM16|ENSG00000142611.12|PR domain containing 16
hg19_v2_chr6_-_53213780_53213947	0.0019272	CUACAGU	ENST00000304434.6|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5 	ENST00000370918.4|ELOVL5|ENSG00000012660.9|ELOVL fatty acid elongase 5
hg19_v2_chr2_+_113033164_113033219	0.00144705	CUACAGU	ENST00000409871.1|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6 	ENST00000343936.4|ZC3H6|ENSG00000188177.9|zinc finger CCCH-type containing 6
hg19_v2_chr1_+_114472222_114472377	0.00139144	CUACAGU	ENST00000369558.1|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1 	ENST00000369561.4|HIPK1|ENSG00000163349.17|homeodomain interacting protein kinase 1
hg19_v2_chr15_-_37390482_37390572	0.00133325	CUACAGU	ENST00000559085.1|MEIS2|ENSG00000134138.15|Meis homeobox 2 	ENST00000397624.3|MEIS2|ENSG00000134138.15|Meis homeobox 2
hg19_v2_chr2_-_69870835_69870853	0.00101263	CUACAGU	ENST00000409085.4|AAK1|ENSG00000115977.14|AP2 associated kinase 1 	ENST00000406297.3|AAK1|ENSG00000115977.14|AP2 associated kinase 1
hg19_v2_chr2_+_160568978_160569064	0.000982659	CUACAGU	ENST00000409175.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000539065.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000259050.4|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase 	ENST00000421037.1|MARCH7|ENSG00000136536.10|membrane-associated ring finger (C3HC4) 7, E3 ubiquitin protein ligase
hg19_v2_chrX_-_33146477_33146521	0.000843861	CUACAGU	ENST00000378677.2|DMD|ENSG00000198947.10|dystrophin
hg19_v2_chr1_+_162467595_162467655	0.000774584	CUACAGU	ENST00000538489.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1 	ENST00000489294.1|UHMK1|ENSG00000152332.11|U2AF homology motif (UHM) kinase 1
hg19_v2_chr13_+_112721913_112721913	0.000689766	CUACAGU	ENST00000330949.1|SOX1|ENSG00000182968.3|SRY (sex determining region Y)-box 1
hg19_v2_chr10_-_735553_735683	0.000682185	CUACAGU	ENST00000280886.6|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila) 	ENST00000423550.1|DIP2C|ENSG00000151240.11|DIP2 disco-interacting protein 2 homolog C (Drosophila)
hg19_v2_chr18_-_18691739_18691812	0.00060367	CUACAGU	ENST00000399799.2|ROCK1|ENSG00000067900.6|Rho-associated, coiled-coil containing protein kinase 1
hg19_v2_chr5_-_136834982_136835037	0.00041818	CUACAGU	ENST00000510689.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1 	ENST00000394945.1|SPOCK1|ENSG00000152377.8|sparc/osteonectin, cwcv and kazal-like domains proteoglycan (testican) 1
hg19_v2_chr14_+_50359773_50359850	0.000174086	CUACAGU	ENST00000298316.5|ARF6|ENSG00000165527.5|ADP-ribosylation factor 6
