hg19_v2_chr6_+_21666633_21666681	1.27796	FOXA2_FOXJ3	ENST00000606851.1|CASC15|ENSG00000272168.1|cancer susceptibility candidate 15 (non-protein coding)
hg19_v2_chr2_-_202563414_202563426	1.19744	FOXA2_FOXJ3	ENST00000409474.3|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 	ENST00000315506.7|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4) 	ENST00000359962.5|MPP4|ENSG00000082126.13|membrane protein, palmitoylated 4 (MAGUK p55 subfamily member 4)
hg19_v2_chr12_-_68696652_68696661	1.09884	FOXA2_FOXJ3	ENST00000539972.1|MDM1|ENSG00000111554.10|Mdm1 nuclear protein homolog (mouse)
hg19_v2_chr8_+_31497271_31497285	1.03544	FOXA2_FOXJ3	ENST00000520407.1|NRG1|ENSG00000157168.14|neuregulin 1
hg19_v2_chr16_-_88772670_88772702	1.01803	FOXA2_FOXJ3	ENST00000562544.1|RNF166|ENSG00000158717.6|ring finger protein 166
hg19_v2_chr10_-_14050522_14050584	0.9816	FOXA2_FOXJ3	ENST00000342409.2|FRMD4A|ENSG00000151474.15|FERM domain containing 4A
hg19_v2_chr4_+_79567314_79567348	0.969531	FOXA2_FOXJ3	ENST00000503539.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094 	ENST00000504675.1|RP11-792D21.2|ENSG00000251442.1|long intergenic non-protein coding RNA 1094
hg19_v2_chr2_+_88047606_88047606	0.703026	FOXA2_FOXJ3	ENST00000359481.4|PLGLB2|ENSG00000125551.14|plasminogen-like B2
hg19_v2_chr4_+_88754069_88754112	0.652424	FOXA2_FOXJ3	ENST00000395102.4|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000497649.2|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr4_+_88754113_88754139	0.649907	FOXA2_FOXJ3	ENST00000560249.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000540395.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000511670.1|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein 	ENST00000361056.3|MEPE|ENSG00000152595.12|matrix extracellular phosphoglycoprotein
hg19_v2_chr1_+_174846570_174846584	0.617666	FOXA2_FOXJ3	ENST00000392064.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr2_+_143635067_143635211	0.594807	FOXA2_FOXJ3	ENST00000264170.4|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr14_+_105267250_105267250	0.590688	FOXA2_FOXJ3	ENST00000342537.7|ZBTB42|ENSG00000179627.9|zinc finger and BTB domain containing 42
hg19_v2_chr20_+_44035200_44035288	0.588426	FOXA2_FOXJ3	ENST00000372717.1|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2 	ENST00000360981.4|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr5_+_135468516_135468621	0.579529	FOXA2_FOXJ3	ENST00000507118.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000511116.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545279.1|SMAD5|ENSG00000113658.12|SMAD family member 5 	ENST00000545620.1|SMAD5|ENSG00000113658.12|SMAD family member 5
hg19_v2_chr2_-_87248975_87248975	0.566048	FOXA2_FOXJ3	ENST00000409310.2|PLGLB1|ENSG00000183281.10|plasminogen-like B1 	ENST00000355705.3|PLGLB1|ENSG00000183281.10|plasminogen-like B1
hg19_v2_chr20_+_44035847_44035879	0.559656	FOXA2_FOXJ3	ENST00000372712.2|DBNDD2|ENSG00000244274.3|dysbindin (dystrobrevin binding protein 1) domain containing 2
hg19_v2_chr19_-_51141196_51141302	0.555823	FOXA2_FOXJ3	ENST00000338916.4|SYT3|ENSG00000213023.5|synaptotagmin III
hg19_v2_chr10_-_4285923_4286104	0.535656	FOXA2_FOXJ3	ENST00000418372.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702 	ENST00000608792.1|LINC00702|ENSG00000233117.2|long intergenic non-protein coding RNA 702
hg19_v2_chr12_-_21927736_21927768	0.534205	FOXA2_FOXJ3	ENST00000240662.2|KCNJ8|ENSG00000121361.3|potassium inwardly-rectifying channel, subfamily J, member 8
hg19_v2_chr5_-_10308125_10308142	0.52961	FOXA2_FOXJ3	ENST00000296658.3|CMBL|ENSG00000164237.4|carboxymethylenebutenolidase homolog (Pseudomonas)
hg19_v2_chr19_+_52839515_52839572	0.515668	FOXA2_FOXJ3	ENST00000403906.3|ZNF610|ENSG00000167554.10|zinc finger protein 610 	ENST00000601151.1|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr7_+_151038850_151038915	0.515457	FOXA2_FOXJ3	ENST00000355851.4|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000566856.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1 	ENST00000470229.1|NUB1|ENSG00000013374.11|negative regulator of ubiquitin-like proteins 1
hg19_v2_chr10_+_70847852_70847874	0.51495	FOXA2_FOXJ3	ENST00000242465.3|SRGN|ENSG00000122862.4|serglycin
hg19_v2_chr21_-_31869451_31869451	0.480742	FOXA2_FOXJ3	ENST00000334058.2|KRTAP19-4|ENSG00000186967.6|keratin associated protein 19-4
hg19_v2_chr16_-_80926457_80926494	0.477756	FOXA2_FOXJ3	ENST00000563626.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1	ENST00000562231.1|RP11-314O13.1|ENSG00000260896.1|RP11-314O13.1
hg19_v2_chr4_-_80994210_80994284	0.47018	FOXA2_FOXJ3	ENST00000403729.2|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr19_+_52839490_52839508	0.469269	FOXA2_FOXJ3	ENST00000321287.8|ZNF610|ENSG00000167554.10|zinc finger protein 610
hg19_v2_chr7_-_115670792_115670798	0.465245	FOXA2_FOXJ3	ENST00000265440.7|TFEC|ENSG00000105967.11|transcription factor EC 	ENST00000393485.1|TFEC|ENSG00000105967.11|transcription factor EC
hg19_v2_chr4_+_118955500_118955612	0.460101	FOXA2_FOXJ3	ENST00000296499.5|NDST3|ENSG00000164100.7|N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
hg19_v2_chr7_-_115670804_115670867	0.455266	FOXA2_FOXJ3	ENST00000320239.7|TFEC|ENSG00000105967.11|transcription factor EC
hg19_v2_chr5_-_13944652_13944652	0.454327	FOXA2_FOXJ3	ENST00000265104.4|DNAH5|ENSG00000039139.9|dynein, axonemal, heavy chain 5
hg19_v2_chr5_-_36242119_36242381	0.451449	FOXA2_FOXJ3	ENST00000511088.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000282512.3|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000506945.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial
hg19_v2_chr17_+_685513_685621	0.446791	FOXA2_FOXJ3	ENST00000304478.4|RNMTL1|ENSG00000171861.6|RNA methyltransferase like 1
hg19_v2_chr19_+_782755_782833	0.445396	FOXA2_FOXJ3	ENST00000606242.1|AC006273.5|ENSG00000267530.2|AC006273.5	ENST00000586061.1|AC006273.5|ENSG00000267530.2|AC006273.5
hg19_v2_chr3_+_130650738_130650888	0.435525	FOXA2_FOXJ3	ENST00000504612.1|ATP2C1|ENSG00000017260.15|ATPase, Ca++ transporting, type 2C, member 1
hg19_v2_chr1_-_89736434_89736546	0.426001	FOXA2_FOXJ3	ENST00000370459.3|GBP5|ENSG00000154451.10|guanylate binding protein 5
hg19_v2_chrX_-_47863348_47863412	0.420287	FOXA2_FOXJ3	ENST00000376943.3|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000396965.1|ZNF182|ENSG00000147118.6|zinc finger protein 182 	ENST00000305127.6|ZNF182|ENSG00000147118.6|zinc finger protein 182
hg19_v2_chr14_-_75518129_75518235	0.420028	FOXA2_FOXJ3	ENST00000556257.1|MLH3|ENSG00000119684.11|mutL homolog 3 	ENST00000557648.1|MLH3|ENSG00000119684.11|mutL homolog 3 	ENST00000553263.1|MLH3|ENSG00000119684.11|mutL homolog 3 	ENST00000355774.2|MLH3|ENSG00000119684.11|mutL homolog 3 	ENST00000380968.2|MLH3|ENSG00000119684.11|mutL homolog 3 	ENST00000238662.7|MLH3|ENSG00000119684.11|mutL homolog 3
hg19_v2_chr3_+_190333097_190333113	0.414804	FOXA2_FOXJ3	ENST00000412080.1|IL1RAP|ENSG00000196083.5|interleukin 1 receptor accessory protein
hg19_v2_chr12_-_12837423_12837501	0.412236	FOXA2_FOXJ3	ENST00000540510.1|GPR19|ENSG00000183150.3|G protein-coupled receptor 19
hg19_v2_chr3_+_132036243_132036268	0.411645	FOXA2_FOXJ3	ENST00000475741.1|ACPP|ENSG00000014257.11|acid phosphatase, prostate 	ENST00000351273.7|ACPP|ENSG00000014257.11|acid phosphatase, prostate
hg19_v2_chr12_-_7596735_7596781	0.408249	FOXA2_FOXJ3	ENST00000416109.2|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000396630.1|CD163L1|ENSG00000177675.4|CD163 molecule-like 1 	ENST00000313599.3|CD163L1|ENSG00000177675.4|CD163 molecule-like 1
hg19_v2_chr2_+_162272605_162272753	0.407342	FOXA2_FOXJ3	ENST00000389554.3|TBR1|ENSG00000136535.10|T-box, brain, 1
hg19_v2_chr4_-_21950356_21950439	0.386087	FOXA2_FOXJ3	ENST00000447367.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4 	ENST00000382152.2|KCNIP4|ENSG00000185774.10|Kv channel interacting protein 4
hg19_v2_chr12_-_57472522_57472556	0.385754	FOXA2_FOXJ3	ENST00000379391.3|TMEM194A|ENSG00000166881.5|transmembrane protein 194A 	ENST00000300128.4|TMEM194A|ENSG00000166881.5|transmembrane protein 194A
hg19_v2_chr11_+_20044096_20044116	0.385225	FOXA2_FOXJ3	ENST00000533917.1|NAV2|ENSG00000166833.15|neuron navigator 2
hg19_v2_chr16_-_28634874_28634907	0.381048	FOXA2_FOXJ3	ENST00000395609.1|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 	ENST00000350842.4|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1
hg19_v2_chr12_+_20968608_20968673	0.379051	FOXA2_FOXJ3	ENST00000381541.3|LST3|ENSG00000257046.1|Putative solute carrier organic anion transporter family member 1B7; Uncharacterized protein  	ENST00000540229.1|LST3|ENSG00000257046.1|Putative solute carrier organic anion transporter family member 1B7; Uncharacterized protein  	ENST00000553473.1|SLCO1B3|ENSG00000111700.8|solute carrier organic anion transporter family, member 1B3 	ENST00000554957.1|SLCO1B7|ENSG00000205754.6|solute carrier organic anion transporter family, member 1B7 (non-functional)
hg19_v2_chr19_+_41768561_41768586	0.377338	FOXA2_FOXJ3	ENST00000599719.1|HNRNPUL1|ENSG00000105323.12|heterogeneous nuclear ribonucleoprotein U-like 1 	ENST00000601309.1|HNRNPUL1|ENSG00000105323.12|heterogeneous nuclear ribonucleoprotein U-like 1
hg19_v2_chr6_-_109330702_109330763	0.373848	FOXA2_FOXJ3	ENST00000356644.7|SESN1|ENSG00000080546.9|sestrin 1
hg19_v2_chr14_+_37126765_37126799	0.373183	FOXA2_FOXJ3	ENST00000402703.2|PAX9|ENSG00000198807.8|paired box 9
hg19_v2_chr7_+_123485102_123485223	0.371374	FOXA2_FOXJ3	ENST00000488323.1|HYAL4|ENSG00000106302.5|hyaluronoglucosaminidase 4 	ENST00000223026.4|HYAL4|ENSG00000106302.5|hyaluronoglucosaminidase 4
hg19_v2_chr3_-_58523010_58523078	0.367874	FOXA2_FOXJ3	ENST00000459701.2|ACOX2|ENSG00000168306.8|acyl-CoA oxidase 2, branched chain 	ENST00000302819.5|ACOX2|ENSG00000168306.8|acyl-CoA oxidase 2, branched chain
hg19_v2_chr4_+_74347400_74347479	0.365728	FOXA2_FOXJ3	ENST00000226355.3|AFM|ENSG00000079557.3|afamin
hg19_v2_chr2_+_143635222_143635240	0.364353	FOXA2_FOXJ3	ENST00000375773.2|KYNU|ENSG00000115919.10|kynureninase 	ENST00000409512.1|KYNU|ENSG00000115919.10|kynureninase 	ENST00000410015.2|KYNU|ENSG00000115919.10|kynureninase
hg19_v2_chr5_+_71616188_71616230	0.363164	FOXA2_FOXJ3	ENST00000380639.5|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000543322.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000503868.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000510676.2|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2 	ENST00000536805.1|PTCD2|ENSG00000049883.10|pentatricopeptide repeat domain 2
hg19_v2_chr18_+_28898052_28898106	0.350142	FOXA2_FOXJ3	ENST00000257192.4|DSG1|ENSG00000134760.5|desmoglein 1
hg19_v2_chr3_+_98451093_98451116	0.349909	FOXA2_FOXJ3	ENST00000483910.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6 	ENST00000460774.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
hg19_v2_chr4_-_76008706_76008878	0.343281	FOXA2_FOXJ3	ENST00000562355.1|RP11-44F21.5|ENSG00000260265.1|RP11-44F21.5	ENST00000563602.1|RP11-44F21.5|ENSG00000260265.1|RP11-44F21.5
hg19_v2_chr10_+_33271469_33271479	0.341352	FOXA2_FOXJ3	ENST00000414157.1|RP11-462L8.1|ENSG00000229656.2|RP11-462L8.1
hg19_v2_chrX_-_101112549_101112549	0.338926	FOXA2_FOXJ3	ENST00000537026.1|NXF5|ENSG00000126952.12|nuclear RNA export factor 5 	ENST00000361708.2|NXF5|ENSG00000126952.12|nuclear RNA export factor 5
hg19_v2_chr5_-_137674000_137674044	0.335848	FOXA2_FOXJ3	ENST00000510119.1|CDC25C|ENSG00000158402.14|cell division cycle 25C 	ENST00000513970.1|CDC25C|ENSG00000158402.14|cell division cycle 25C
hg19_v2_chr4_+_103790462_103790537	0.329716	FOXA2_FOXJ3	ENST00000503643.1|CISD2|ENSG00000145354.5|CDGSH iron sulfur domain 2
hg19_v2_chr17_-_29641084_29641103	0.32792	FOXA2_FOXJ3	ENST00000544462.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr10_+_124739964_124739994	0.324931	FOXA2_FOXJ3	ENST00000406217.2|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr18_-_25616519_25616549	0.324691	FOXA2_FOXJ3	ENST00000399380.3|CDH2|ENSG00000170558.4|cadherin 2, type 1, N-cadherin (neuronal)
hg19_v2_chr12_+_54378923_54378970	0.324361	FOXA2_FOXJ3	ENST00000303460.4|HOXC10|ENSG00000180818.4|homeobox C10
hg19_v2_chr3_+_107096188_107096236	0.323701	FOXA2_FOXJ3	ENST00000261058.1|CCDC54|ENSG00000138483.1|coiled-coil domain containing 54
hg19_v2_chr2_-_170430366_170430390	0.321638	FOXA2_FOXJ3	ENST00000453153.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000445210.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chr12_-_76462713_76462773	0.320001	FOXA2_FOXJ3	ENST00000552056.1|NAP1L1|ENSG00000187109.9|nucleosome assembly protein 1-like 1
hg19_v2_chr1_+_15853308_15853413	0.318586	FOXA2_FOXJ3	ENST00000375838.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375847.3|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16 	ENST00000375849.1|DNAJC16|ENSG00000116138.8|DnaJ (Hsp40) homolog, subfamily C, member 16
hg19_v2_chr10_+_124739911_124739957	0.317579	FOXA2_FOXJ3	ENST00000405485.1|PSTK|ENSG00000179988.9|phosphoseryl-tRNA kinase
hg19_v2_chr3_-_127455200_127455223	0.316129	FOXA2_FOXJ3	ENST00000398101.3|MGLL|ENSG00000074416.9|monoglyceride lipase
hg19_v2_chr2_-_170430277_170430361	0.314995	FOXA2_FOXJ3	ENST00000438035.1|FASTKD1|ENSG00000138399.13|FAST kinase domains 1 	ENST00000453929.2|FASTKD1|ENSG00000138399.13|FAST kinase domains 1
hg19_v2_chr1_+_74701062_74701099	0.311099	FOXA2_FOXJ3	ENST00000326637.3|TNNI3K|ENSG00000116783.10|TNNI3 interacting kinase
hg19_v2_chr4_-_76928641_76928668	0.301896	FOXA2_FOXJ3	ENST00000264888.5|CXCL9|ENSG00000138755.5|chemokine (C-X-C motif) ligand 9
hg19_v2_chr4_-_70826725_70826725	0.301699	FOXA2_FOXJ3	ENST00000353151.3|CSN2|ENSG00000135222.6|casein beta
hg19_v2_chr1_+_78470530_78470551	0.298025	FOXA2_FOXJ3	ENST00000370763.5|DNAJB4|ENSG00000162616.8|DnaJ (Hsp40) homolog, subfamily B, member 4
hg19_v2_chr2_-_224702740_224702761	0.293379	FOXA2_FOXJ3	ENST00000444408.1|AP1S3|ENSG00000152056.12|adaptor-related protein complex 1, sigma 3 subunit
hg19_v2_chr11_-_114466471_114466474	0.28641	FOXA2_FOXJ3	ENST00000424261.2|NXPE4|ENSG00000137634.5|neurexophilin and PC-esterase domain family, member 4
hg19_v2_chr18_+_21032781_21032795	0.282637	FOXA2_FOXJ3	ENST00000339486.3|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr5_-_19988339_19988358	0.278999	FOXA2_FOXJ3	ENST00000382275.1|CDH18|ENSG00000145526.7|cadherin 18, type 2
hg19_v2_chr5_-_159846399_159846412	0.278459	FOXA2_FOXJ3	ENST00000297151.4|SLU7|ENSG00000164609.5|SLU7 splicing factor homolog (S. cerevisiae)
hg19_v2_chr5_+_147774275_147774340	0.277502	FOXA2_FOXJ3	ENST00000513826.1|FBXO38|ENSG00000145868.12|F-box protein 38
hg19_v2_chr10_-_63995871_63996022	0.274278	FOXA2_FOXJ3	ENST00000315289.2|RTKN2|ENSG00000182010.6|rhotekin 2
hg19_v2_chr19_-_50666431_50666455	0.272126	FOXA2_FOXJ3	ENST00000293405.3|IZUMO2|ENSG00000161652.8|IZUMO family member 2
hg19_v2_chr9_-_86432547_86432699	0.272076	FOXA2_FOXJ3	ENST00000376365.3|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1 	ENST00000376371.2|GKAP1|ENSG00000165113.8|G kinase anchoring protein 1
hg19_v2_chr14_+_88851874_88852056	0.271841	FOXA2_FOXJ3	ENST00000393545.4|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000356583.5|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000555401.1|SPATA7|ENSG00000042317.12|spermatogenesis associated 7 	ENST00000553885.1|SPATA7|ENSG00000042317.12|spermatogenesis associated 7
hg19_v2_chr11_-_5345582_5345582	0.271749	FOXA2_FOXJ3	ENST00000328813.2|OR51B2|ENSG00000184881.2|olfactory receptor, family 51, subfamily B, member 2
hg19_v2_chr17_+_77030267_77030391	0.270759	FOXA2_FOXJ3	ENST00000581774.1|C1QTNF1|ENSG00000173918.10|C1q and tumor necrosis factor related protein 1
hg19_v2_chr3_-_156272924_156272973	0.267855	FOXA2_FOXJ3	ENST00000467789.1|SSR3|ENSG00000114850.2|signal sequence receptor, gamma (translocon-associated protein gamma) 	ENST00000265044.2|SSR3|ENSG00000114850.2|signal sequence receptor, gamma (translocon-associated protein gamma)
hg19_v2_chr14_-_58894223_58894261	0.26769	FOXA2_FOXJ3	ENST00000555593.1|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr7_+_151653464_151653513	0.267646	FOXA2_FOXJ3	ENST00000431418.2|GALNTL5|ENSG00000106648.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5 	ENST00000392800.2|GALNTL5|ENSG00000106648.9|UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5
hg19_v2_chr13_+_78315295_78315337	0.266325	FOXA2_FOXJ3	ENST00000351546.3|SLAIN1|ENSG00000139737.17|SLAIN motif family, member 1
hg19_v2_chr4_+_74301880_74301964	0.265844	FOXA2_FOXJ3	ENST00000395792.2|AFP|ENSG00000081051.3|alpha-fetoprotein 	ENST00000226359.2|AFP|ENSG00000081051.3|alpha-fetoprotein
hg19_v2_chr14_-_58893832_58893865	0.262663	FOXA2_FOXJ3	ENST00000556007.2|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr7_-_144435985_144436015	0.262555	FOXA2_FOXJ3	ENST00000549981.1|TPK1|ENSG00000196511.9|thiamin pyrophosphokinase 1
hg19_v2_chr6_-_80247105_80247133	0.261267	FOXA2_FOXJ3	ENST00000369846.4|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr1_+_150122034_150122170	0.261256	FOXA2_FOXJ3	ENST00000025469.6|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1 	ENST00000369124.4|PLEKHO1|ENSG00000023902.9|pleckstrin homology domain containing, family O member 1
hg19_v2_chr4_-_138453606_138453673	0.260622	FOXA2_FOXJ3	ENST00000412923.2|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000344876.4|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000507846.1|PCDH18|ENSG00000189184.7|protocadherin 18 	ENST00000510305.1|PCDH18|ENSG00000189184.7|protocadherin 18
hg19_v2_chr2_+_61372226_61372273	0.260573	FOXA2_FOXJ3	ENST00000426997.1|C2orf74|ENSG00000237651.2|chromosome 2 open reading frame 74
hg19_v2_chr6_-_80247140_80247175	0.258788	FOXA2_FOXJ3	ENST00000392959.1|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5 	ENST00000467898.3|LCA5|ENSG00000135338.9|Leber congenital amaurosis 5
hg19_v2_chr14_-_58894332_58894380	0.258336	FOXA2_FOXJ3	ENST00000395159.2|TIMM9|ENSG00000100575.9|translocase of inner mitochondrial membrane 9 homolog (yeast)
hg19_v2_chr19_+_6464243_6464325	0.255687	FOXA2_FOXJ3	ENST00000600229.1|CRB3|ENSG00000130545.11|crumbs homolog 3 (Drosophila) 	ENST00000356762.3|CRB3|ENSG00000130545.11|crumbs homolog 3 (Drosophila)
hg19_v2_chr1_+_86934526_86934578	0.252311	FOXA2_FOXJ3	ENST00000394711.1|CLCA1|ENSG00000016490.11|chloride channel accessory 1
hg19_v2_chr6_-_168479839_168479904	0.249785	FOXA2_FOXJ3	ENST00000283309.6|FRMD1|ENSG00000153303.12|FERM domain containing 1
hg19_v2_chr2_+_113885138_113885181	0.245264	FOXA2_FOXJ3	ENST00000409930.3|IL1RN|ENSG00000136689.14|interleukin 1 receptor antagonist
hg19_v2_chr4_-_123542224_123542224	0.245217	FOXA2_FOXJ3	ENST00000264497.3|IL21|ENSG00000138684.3|interleukin 21
hg19_v2_chr4_-_70080449_70080449	0.243873	FOXA2_FOXJ3	ENST00000446444.1|UGT2B11|ENSG00000213759.4|UDP glucuronosyltransferase 2 family, polypeptide B11
hg19_v2_chr11_-_102651343_102651365	0.241355	FOXA2_FOXJ3	ENST00000279441.4|MMP10|ENSG00000166670.5|matrix metallopeptidase 10 (stromelysin 2) 	ENST00000539681.1|MMP10|ENSG00000166670.5|matrix metallopeptidase 10 (stromelysin 2)
hg19_v2_chr19_-_50666404_50666424	0.240685	FOXA2_FOXJ3	ENST00000600293.1|IZUMO2|ENSG00000161652.8|IZUMO family member 2
hg19_v2_chr1_+_172389821_172389833	0.237671	FOXA2_FOXJ3	ENST00000367727.4|C1orf105|ENSG00000180999.6|chromosome 1 open reading frame 105
hg19_v2_chr3_+_98451275_98451361	0.235703	FOXA2_FOXJ3	ENST00000265261.6|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6 	ENST00000497008.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
hg19_v2_chr11_-_62997124_62997124	0.234446	FOXA2_FOXJ3	ENST00000306494.6|SLC22A25|ENSG00000196600.8|solute carrier family 22, member 25
hg19_v2_chr1_+_87797351_87797441	0.234192	FOXA2_FOXJ3	ENST00000370542.1|LMO4|ENSG00000143013.8|LIM domain only 4
hg19_v2_chr16_+_11439286_11439328	0.232271	FOXA2_FOXJ3	ENST00000312499.5|RMI2|ENSG00000175643.7|RecQ mediated genome instability 2 	ENST00000576027.1|RMI2|ENSG00000175643.7|RecQ mediated genome instability 2
hg19_v2_chr4_-_164534657_164534701	0.231858	FOXA2_FOXJ3	ENST00000339875.5|MARCH1|ENSG00000145416.9|membrane-associated ring finger (C3HC4) 1, E3 ubiquitin protein ligase
hg19_v2_chr10_-_32217717_32217781	0.230715	FOXA2_FOXJ3	ENST00000396144.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375245.4|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000344936.2|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12 	ENST00000375250.5|ARHGAP12|ENSG00000165322.13|Rho GTPase activating protein 12
hg19_v2_chr5_-_59064458_59064511	0.22952	FOXA2_FOXJ3	ENST00000502575.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000507116.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr4_-_174256276_174256303	0.227758	FOXA2_FOXJ3	ENST00000296503.5|HMGB2|ENSG00000164104.7|high mobility group box 2
hg19_v2_chr6_+_56911336_56911347	0.2277	FOXA2_FOXJ3	ENST00000370733.4|KIAA1586|ENSG00000168116.9|KIAA1586
hg19_v2_chr2_+_175260451_175260513	0.226889	FOXA2_FOXJ3	ENST00000458563.1|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000409673.3|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000272732.6|SCRN3|ENSG00000144306.9|secernin 3 	ENST00000435964.1|SCRN3|ENSG00000144306.9|secernin 3
hg19_v2_chr7_-_23571586_23571660	0.224046	FOXA2_FOXJ3	ENST00000538367.1|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000392502.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila) 	ENST00000297071.4|TRA2A|ENSG00000164548.6|transformer 2 alpha homolog (Drosophila)
hg19_v2_chr17_-_39203519_39203568	0.223513	FOXA2_FOXJ3	ENST00000542137.1|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1 	ENST00000391419.3|KRTAP2-1|ENSG00000212725.3|keratin associated protein 2-1
hg19_v2_chr9_+_127054217_127054252	0.220941	FOXA2_FOXJ3	ENST00000394199.2|NEK6|ENSG00000119408.12|NIMA-related kinase 6 	ENST00000546191.1|NEK6|ENSG00000119408.12|NIMA-related kinase 6
hg19_v2_chr4_-_153332886_153333030	0.220338	FOXA2_FOXJ3	ENST00000603841.1|FBXW7|ENSG00000109670.9|F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
hg19_v2_chr5_+_140529630_140529683	0.218871	FOXA2_FOXJ3	ENST00000543635.1|PCDHB6|ENSG00000113211.3|protocadherin beta 6
hg19_v2_chr13_-_47471155_47471214	0.218518	FOXA2_FOXJ3	ENST00000543956.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled 	ENST00000542664.1|HTR2A|ENSG00000102468.6|5-hydroxytryptamine (serotonin) receptor 2A, G protein-coupled
hg19_v2_chr11_-_110561721_110561721	0.21846	FOXA2_FOXJ3	ENST00000357139.3|ARHGAP20|ENSG00000137727.8|Rho GTPase activating protein 20
hg19_v2_chr11_+_7110165_7110277	0.218264	FOXA2_FOXJ3	ENST00000306904.5|RBMXL2|ENSG00000170748.5|RNA binding motif protein, X-linked-like 2
hg19_v2_chr10_-_25010795_25010904	0.216841	FOXA2_FOXJ3	ENST00000416305.1|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21 	ENST00000376410.2|ARHGAP21|ENSG00000107863.12|Rho GTPase activating protein 21
hg19_v2_chr4_+_154622652_154622652	0.216463	FOXA2_FOXJ3	ENST00000260010.6|TLR2|ENSG00000137462.6|toll-like receptor 2
hg19_v2_chr2_+_201170703_201170716	0.216365	FOXA2_FOXJ3	ENST00000358677.5|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr1_+_43855545_43855557	0.213956	FOXA2_FOXJ3	ENST00000372450.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse) 	ENST00000310739.4|SZT2|ENSG00000198198.9|seizure threshold 2 homolog (mouse)
hg19_v2_chr5_-_36241900_36241976	0.213706	FOXA2_FOXJ3	ENST00000381937.4|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial 	ENST00000514504.1|NADK2|ENSG00000152620.8|NAD kinase 2, mitochondrial
hg19_v2_chr3_+_132036207_132036218	0.213694	FOXA2_FOXJ3	ENST00000336375.5|ACPP|ENSG00000014257.11|acid phosphatase, prostate 	ENST00000495911.1|ACPP|ENSG00000014257.11|acid phosphatase, prostate
hg19_v2_chr1_-_100231349_100231349	0.211479	FOXA2_FOXJ3	ENST00000287474.5|FRRS1|ENSG00000156869.8|ferric-chelate reductase 1 	ENST00000414213.1|FRRS1|ENSG00000156869.8|ferric-chelate reductase 1
hg19_v2_chr6_+_74171301_74171493	0.211243	FOXA2_FOXJ3	ENST00000415954.2|MTO1|ENSG00000135297.11|mitochondrial tRNA translation optimization 1 	ENST00000498286.1|MTO1|ENSG00000135297.11|mitochondrial tRNA translation optimization 1 	ENST00000370305.1|MTO1|ENSG00000135297.11|mitochondrial tRNA translation optimization 1 	ENST00000370300.4|MTO1|ENSG00000135297.11|mitochondrial tRNA translation optimization 1
hg19_v2_chr13_-_49975632_49975735	0.211068	FOXA2_FOXJ3	ENST00000457041.1|CAB39L|ENSG00000102547.14|calcium binding protein 39-like 	ENST00000355854.4|CAB39L|ENSG00000102547.14|calcium binding protein 39-like
hg19_v2_chr3_+_98451532_98451572	0.211066	FOXA2_FOXJ3	ENST00000486334.2|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6 	ENST00000394162.1|ST3GAL6|ENSG00000064225.8|ST3 beta-galactoside alpha-2,3-sialyltransferase 6
hg19_v2_chr1_-_157811588_157811604	0.210079	FOXA2_FOXJ3	ENST00000368174.4|CD5L|ENSG00000073754.5|CD5 molecule-like
hg19_v2_chr3_-_150920979_150921009	0.209761	FOXA2_FOXJ3	ENST00000309180.5|GPR171|ENSG00000174946.5|G protein-coupled receptor 171 	ENST00000480322.1|GPR171|ENSG00000174946.5|G protein-coupled receptor 171
hg19_v2_chr2_+_109204909_109204928	0.207727	FOXA2_FOXJ3	ENST00000393310.1|LIMS1|ENSG00000169756.12|LIM and senescent cell antigen-like domains 1
hg19_v2_chr9_+_120466650_120466659	0.206097	FOXA2_FOXJ3	ENST00000355622.6|TLR4|ENSG00000136869.13|toll-like receptor 4
hg19_v2_chr14_-_31926701_31926734	0.205858	FOXA2_FOXJ3	ENST00000310850.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr5_+_156607829_156607946	0.205734	FOXA2_FOXJ3	ENST00000422843.3|ITK|ENSG00000113263.8|IL2-inducible T-cell kinase
hg19_v2_chr6_-_25830785_25830844	0.20553	FOXA2_FOXJ3	ENST00000468082.1|SLC17A1|ENSG00000124568.6|solute carrier family 17 (organic anion transporter), member 1
hg19_v2_chr11_+_55029628_55029658	0.204565	FOXA2_FOXJ3	ENST00000417545.2|TRIM48|ENSG00000150244.8|tripartite motif containing 48
hg19_v2_chr3_-_157221128_157221216	0.203201	FOXA2_FOXJ3	ENST00000392833.2|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1 	ENST00000362010.2|VEPH1|ENSG00000197415.7|ventricular zone expressed PH domain-containing 1
hg19_v2_chr12_+_97306295_97306354	0.202757	FOXA2_FOXJ3	ENST00000457368.2|NEDD1|ENSG00000139350.7|neural precursor cell expressed, developmentally down-regulated 1
hg19_v2_chr17_-_36831156_36831187	0.201604	FOXA2_FOXJ3	ENST00000325814.5|C17orf96|ENSG00000179294.5|chromosome 17 open reading frame 96
hg19_v2_chr3_-_169487617_169487683	0.199229	FOXA2_FOXJ3	ENST00000330368.2|ACTRT3|ENSG00000184378.2|actin-related protein T3
hg19_v2_chr4_-_80994471_80994485	0.198886	FOXA2_FOXJ3	ENST00000295465.4|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr8_+_36641842_36641902	0.198125	FOXA2_FOXJ3	ENST00000523973.1|KCNU1|ENSG00000215262.3|potassium channel, subfamily U, member 1 	ENST00000399881.3|KCNU1|ENSG00000215262.3|potassium channel, subfamily U, member 1
hg19_v2_chr5_-_58571935_58571951	0.196667	FOXA2_FOXJ3	ENST00000503258.1|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr19_+_36486078_36486123	0.195724	FOXA2_FOXJ3	ENST00000378887.2|SDHAF1|ENSG00000205138.2|succinate dehydrogenase complex assembly factor 1
hg19_v2_chr10_-_50396407_50396424	0.19564	FOXA2_FOXJ3	ENST00000374153.2|C10orf128|ENSG00000204161.9|chromosome 10 open reading frame 128 	ENST00000374151.3|C10orf128|ENSG00000204161.9|chromosome 10 open reading frame 128
hg19_v2_chr1_+_18958008_18958023	0.193738	FOXA2_FOXJ3	ENST00000420770.2|PAX7|ENSG00000009709.7|paired box 7 	ENST00000400661.3|PAX7|ENSG00000009709.7|paired box 7
hg19_v2_chr6_-_13621126_13621126	0.193017	FOXA2_FOXJ3	ENST00000600057.1|AL441883.1|ENSG00000268059.1|Uncharacterized protein
hg19_v2_chr10_-_99094458_99094500	0.192315	FOXA2_FOXJ3	ENST00000371019.2|FRAT2|ENSG00000181274.5|frequently rearranged in advanced T-cell lymphomas 2
hg19_v2_chrX_-_122756660_122756696	0.190528	FOXA2_FOXJ3	ENST00000441692.1|THOC2|ENSG00000125676.15|THO complex 2
hg19_v2_chr12_+_99038998_99039078	0.188921	FOXA2_FOXJ3	ENST00000359972.2|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000357310.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000339433.3|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1 	ENST00000333991.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr16_-_25122785_25122876	0.187959	FOXA2_FOXJ3	ENST00000563962.1|RP11-449H11.1|ENSG00000260448.1|RP11-449H11.1	ENST00000569920.1|RP11-449H11.1|ENSG00000260448.1|RP11-449H11.1
hg19_v2_chr4_-_80994619_80994633	0.187173	FOXA2_FOXJ3	ENST00000404191.1|ANTXR2|ENSG00000163297.12|anthrax toxin receptor 2
hg19_v2_chr2_+_58655461_58655492	0.187035	FOXA2_FOXJ3	ENST00000429095.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000429664.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122 	ENST00000452840.1|AC007092.1|ENSG00000233723.3|long intergenic non-protein coding RNA 1122
hg19_v2_chr4_+_147096837_147096912	0.1861	FOXA2_FOXJ3	ENST00000296581.5|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae) 	ENST00000502781.1|LSM6|ENSG00000164167.5|LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
hg19_v2_chr1_-_57431679_57431810	0.184991	FOXA2_FOXJ3	ENST00000371237.4|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000535057.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide 	ENST00000543257.1|C8B|ENSG00000021852.8|complement component 8, beta polypeptide
hg19_v2_chr20_+_54823788_54823788	0.184217	FOXA2_FOXJ3	ENST00000243911.2|MC3R|ENSG00000124089.4|melanocortin 3 receptor
hg19_v2_chr9_-_28670283_28670283	0.182135	FOXA2_FOXJ3	ENST00000379992.2|LINGO2|ENSG00000174482.6|leucine rich repeat and Ig domain containing 2
hg19_v2_chrX_+_16668278_16668282	0.180363	FOXA2_FOXJ3	ENST00000380200.3|S100G|ENSG00000169906.5|S100 calcium binding protein G
hg19_v2_chr16_-_4817129_4817219	0.180261	FOXA2_FOXJ3	ENST00000545009.1|ZNF500|ENSG00000103199.9|zinc finger protein 500 	ENST00000219478.6|ZNF500|ENSG00000103199.9|zinc finger protein 500
hg19_v2_chr1_+_95616933_95616933	0.17998	FOXA2_FOXJ3	ENST00000604203.1|RP11-57H12.6|ENSG00000271092.1|TMEM56-RWDD3 readthrough
hg19_v2_chr9_+_70856397_70856397	0.178428	FOXA2_FOXJ3	ENST00000360171.6|CBWD3|ENSG00000196873.11|COBW domain containing 3
hg19_v2_chr15_-_43559055_43559131	0.177589	FOXA2_FOXJ3	ENST00000220420.5|TGM5|ENSG00000104055.10|transglutaminase 5 	ENST00000349114.4|TGM5|ENSG00000104055.10|transglutaminase 5
hg19_v2_chr16_+_10479906_10479925	0.176994	FOXA2_FOXJ3	ENST00000562527.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000396560.2|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000396559.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000562102.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000543967.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000569939.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2 	ENST00000569900.1|ATF7IP2|ENSG00000166669.9|activating transcription factor 7 interacting protein 2
hg19_v2_chr14_-_24020858_24020988	0.17614	FOXA2_FOXJ3	ENST00000419474.3|ZFHX2|ENSG00000136367.12|zinc finger homeobox 2
hg19_v2_chr13_-_36920420_36920574	0.175977	FOXA2_FOXJ3	ENST00000438666.2|SPG20|ENSG00000133104.8|spastic paraplegia 20 (Troyer syndrome)
hg19_v2_chr1_+_246729724_246729794	0.174657	FOXA2_FOXJ3	ENST00000366513.4|CNST|ENSG00000162852.9|consortin, connexin sorting protein 	ENST00000366512.3|CNST|ENSG00000162852.9|consortin, connexin sorting protein
hg19_v2_chr13_+_41885341_41885443	0.174489	FOXA2_FOXJ3	ENST00000379406.3|NAA16|ENSG00000172766.14|N(alpha)-acetyltransferase 16, NatA auxiliary subunit 	ENST00000379367.3|NAA16|ENSG00000172766.14|N(alpha)-acetyltransferase 16, NatA auxiliary subunit 	ENST00000403412.3|NAA16|ENSG00000172766.14|N(alpha)-acetyltransferase 16, NatA auxiliary subunit
hg19_v2_chr1_-_207095212_207095278	0.173208	FOXA2_FOXJ3	ENST00000420007.2|FAIM3|ENSG00000162894.7|Fas apoptotic inhibitory molecule 3
hg19_v2_chr18_-_31628558_31628558	0.173022	FOXA2_FOXJ3	ENST00000535384.1|NOL4|ENSG00000101746.11|nucleolar protein 4
hg19_v2_chr1_-_3566627_3566676	0.172111	FOXA2_FOXJ3	ENST00000419924.2|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000270708.7|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr3_-_48956818_48956818	0.170073	FOXA2_FOXJ3	ENST00000408959.2|ARIH2OS|ENSG00000221883.2|ariadne homolog 2 opposite strand
hg19_v2_chr14_+_100070869_100070893	0.169563	FOXA2_FOXJ3	ENST00000502101.2|RP11-543C4.1|ENSG00000247970.2|RP11-543C4.1
hg19_v2_chr17_-_41985096_41985139	0.167254	FOXA2_FOXJ3	ENST00000269095.4|MPP2|ENSG00000108852.10|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2) 	ENST00000523220.1|MPP2|ENSG00000108852.10|membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)
hg19_v2_chrX_-_70329118_70329194	0.166535	FOXA2_FOXJ3	ENST00000374188.3|IL2RG|ENSG00000147168.8|interleukin 2 receptor, gamma
hg19_v2_chr12_-_91574142_91574289	0.166284	FOXA2_FOXJ3	ENST00000547937.1|DCN|ENSG00000011465.12|decorin
hg19_v2_chr8_+_21777159_21777221	0.165675	FOXA2_FOXJ3	ENST00000434536.1|XPO7|ENSG00000130227.12|exportin 7 	ENST00000252512.9|XPO7|ENSG00000130227.12|exportin 7
hg19_v2_chr2_+_170440844_170440897	0.165331	FOXA2_FOXJ3	ENST00000260970.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000433207.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000409714.3|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G) 	ENST00000462903.1|PPIG|ENSG00000138398.11|peptidylprolyl isomerase G (cyclophilin G)
hg19_v2_chr20_+_36373032_36373047	0.164826	FOXA2_FOXJ3	ENST00000373473.1|CTNNBL1|ENSG00000132792.14|catenin, beta like 1
hg19_v2_chr5_-_131132614_131132648	0.164549	FOXA2_FOXJ3	ENST00000307968.7|FNIP1|ENSG00000217128.7|folliculin interacting protein 1 	ENST00000307954.8|FNIP1|ENSG00000217128.7|folliculin interacting protein 1
hg19_v2_chr8_-_95449155_95449188	0.162523	FOXA2_FOXJ3	ENST00000481490.2|FSBP|ENSG00000265817.1|fibrinogen silencer binding protein
hg19_v2_chr1_-_3566590_3566622	0.162517	FOXA2_FOXJ3	ENST00000424367.1|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73 	ENST00000378322.3|WRAP73|ENSG00000116213.11|WD repeat containing, antisense to TP73
hg19_v2_chr7_+_76090993_76091044	0.160857	FOXA2_FOXJ3	ENST00000425780.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000456590.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000451769.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000324432.5|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000307569.8|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000457529.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000446600.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000413936.2|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000423646.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000438930.1|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila) 	ENST00000430490.2|DTX2|ENSG00000091073.15|deltex homolog 2 (Drosophila)
hg19_v2_chr1_+_174844645_174844684	0.160643	FOXA2_FOXJ3	ENST00000486220.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr4_+_89206076_89206103	0.159555	FOXA2_FOXJ3	ENST00000500009.2|RP11-10L7.1|ENSG00000246375.2|RP11-10L7.1
hg19_v2_chr1_-_149982624_149982719	0.159447	FOXA2_FOXJ3	ENST00000417191.1|OTUD7B|ENSG00000163113.10|OTU domain containing 7B 	ENST00000369135.4|OTUD7B|ENSG00000163113.10|OTU domain containing 7B
hg19_v2_chr15_+_58430368_58430401	0.159178	FOXA2_FOXJ3	ENST00000558772.1|AQP9|ENSG00000103569.5|aquaporin 9 	ENST00000219919.4|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chr16_-_11375179_11375207	0.158269	FOXA2_FOXJ3	ENST00000312511.3|PRM1|ENSG00000175646.3|protamine 1
hg19_v2_chr2_-_14541060_14541087	0.156211	FOXA2_FOXJ3	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr6_+_161123270_161123278	0.156087	FOXA2_FOXJ3	ENST00000366924.2|PLG|ENSG00000122194.14|plasminogen 	ENST00000308192.9|PLG|ENSG00000122194.14|plasminogen 	ENST00000418964.1|PLG|ENSG00000122194.14|plasminogen
hg19_v2_chr3_+_119316689_119316710	0.154394	FOXA2_FOXJ3	ENST00000273371.4|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr2_+_201170770_201170882	0.153376	FOXA2_FOXJ3	ENST00000409988.3|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409385.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr3_-_169587621_169587728	0.151655	FOXA2_FOXJ3	ENST00000523069.1|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31 	ENST00000316428.5|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31 	ENST00000264676.5|LRRC31|ENSG00000114248.5|leucine rich repeat containing 31
hg19_v2_chr12_-_75905374_75905420	0.151559	FOXA2_FOXJ3	ENST00000438169.2|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast) 	ENST00000229214.4|KRR1|ENSG00000111615.8|KRR1, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr7_-_16840820_16841011	0.151171	FOXA2_FOXJ3	ENST00000450569.1|AGR2|ENSG00000106541.7|anterior gradient 2
hg19_v2_chr6_-_41715128_41715142	0.151003	FOXA2_FOXJ3	ENST00000356667.4|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000373025.3|PGC|ENSG00000096088.12|progastricsin (pepsinogen C) 	ENST00000425343.2|PGC|ENSG00000096088.12|progastricsin (pepsinogen C)
hg19_v2_chr1_+_73771844_73771922	0.150692	FOXA2_FOXJ3	ENST00000440762.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000444827.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000415686.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1	ENST00000411903.1|RP4-598G3.1|ENSG00000233973.1|RP4-598G3.1
hg19_v2_chr15_+_58430567_58430589	0.150587	FOXA2_FOXJ3	ENST00000536493.1|AQP9|ENSG00000103569.5|aquaporin 9
hg19_v2_chrX_-_50557302_50557316	0.150414	FOXA2_FOXJ3	ENST00000289292.7|SHROOM4|ENSG00000158352.11|shroom family member 4
hg19_v2_chr6_-_711395_711411	0.150301	FOXA2_FOXJ3	ENST00000606285.1|RP11-532F6.3|ENSG00000272463.1|RP11-532F6.3
hg19_v2_chr13_+_52598827_52598827	0.150207	FOXA2_FOXJ3	ENST00000521776.2|UTP14C|ENSG00000253797.2|UTP14, U3 small nucleolar ribonucleoprotein, homolog C (yeast)
hg19_v2_chrX_-_106959631_106959775	0.149765	FOXA2_FOXJ3	ENST00000486554.1|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3 	ENST00000372390.4|TSC22D3|ENSG00000157514.12|TSC22 domain family, member 3
hg19_v2_chr1_+_24645807_24645819	0.149718	FOXA2_FOXJ3	ENST00000361548.4|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chrX_-_133792480_133792522	0.149293	FOXA2_FOXJ3	ENST00000359237.4|PLAC1|ENSG00000170965.5|placenta-specific 1
hg19_v2_chr18_+_54814288_54814354	0.148981	FOXA2_FOXJ3	ENST00000585477.1|BOD1L2|ENSG00000228075.4|biorientation of chromosomes in cell division 1-like 2
hg19_v2_chr1_-_39339777_39339777	0.148602	FOXA2_FOXJ3	ENST00000397572.2|MYCBP|ENSG00000214114.4|MYC binding protein
hg19_v2_chr1_-_153931052_153931124	0.148301	FOXA2_FOXJ3	ENST00000368630.3|CRTC2|ENSG00000160741.12|CREB regulated transcription coactivator 2 	ENST00000368633.1|CRTC2|ENSG00000160741.12|CREB regulated transcription coactivator 2
hg19_v2_chr17_-_18430160_18430160	0.14793	FOXA2_FOXJ3	ENST00000392176.3|FAM106A|ENSG00000213077.5|family with sequence similarity 106, member A
hg19_v2_chr14_+_102606181_102606261	0.147595	FOXA2_FOXJ3	ENST00000335263.5|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000322340.5|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000424963.2|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000342702.3|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000556807.1|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000499851.2|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000558567.1|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000299135.6|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000454394.2|WDR20|ENSG00000140153.13|WD repeat domain 20 	ENST00000556511.2|WDR20|ENSG00000140153.13|WD repeat domain 20
hg19_v2_chr19_-_58662139_58662182	0.147075	FOXA2_FOXJ3	ENST00000598312.1|ZNF329|ENSG00000181894.10|zinc finger protein 329
hg19_v2_chr1_-_241803649_241803678	0.14686	FOXA2_FOXJ3	ENST00000366554.2|OPN3|ENSG00000054277.8|opsin 3
hg19_v2_chr13_-_38443860_38443939	0.146587	FOXA2_FOXJ3	ENST00000426868.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379681.3|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000338947.5|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000355779.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000358477.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4 	ENST00000379673.2|TRPC4|ENSG00000133107.10|transient receptor potential cation channel, subfamily C, member 4
hg19_v2_chr1_-_241803679_241803701	0.146327	FOXA2_FOXJ3	ENST00000331838.5|OPN3|ENSG00000054277.8|opsin 3
hg19_v2_chr1_+_24645865_24645881	0.146057	FOXA2_FOXJ3	ENST00000342072.4|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr1_-_213188772_213188856	0.145891	FOXA2_FOXJ3	ENST00000544555.1|ANGEL2|ENSG00000174606.8|angel homolog 2 (Drosophila)
hg19_v2_chr9_-_136933615_136933682	0.144975	FOXA2_FOXJ3	ENST00000371834.2|BRD3|ENSG00000169925.12|bromodomain containing 3
hg19_v2_chr6_+_168418553_168418581	0.144597	FOXA2_FOXJ3	ENST00000354419.2|KIF25|ENSG00000125337.12|kinesin family member 25 	ENST00000351261.3|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr17_-_30228678_30228784	0.144475	FOXA2_FOXJ3	ENST00000261708.4|UTP6|ENSG00000108651.5|UTP6, small subunit (SSU) processome component, homolog (yeast)
hg19_v2_chr1_+_163039143_163039159	0.144327	FOXA2_FOXJ3	ENST00000531057.1|RGS4|ENSG00000117152.9|regulator of G-protein signaling 4 	ENST00000527809.1|RGS4|ENSG00000117152.9|regulator of G-protein signaling 4 	ENST00000367908.4|RGS4|ENSG00000117152.9|regulator of G-protein signaling 4
hg19_v2_chr10_-_131762105_131762105	0.143233	FOXA2_FOXJ3	ENST00000368648.3|EBF3|ENSG00000108001.9|early B-cell factor 3 	ENST00000355311.5|EBF3|ENSG00000108001.9|early B-cell factor 3
hg19_v2_chr19_-_15087839_15087849	0.142494	FOXA2_FOXJ3	ENST00000600144.1|SLC1A6|ENSG00000105143.8|solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6
hg19_v2_chr9_+_127962795_127962834	0.142128	FOXA2_FOXJ3	ENST00000394125.4|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs 	ENST00000259460.8|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs 	ENST00000373544.1|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs
hg19_v2_chr4_+_165675269_165675289	0.142004	FOXA2_FOXJ3	ENST00000507311.1|RP11-294O2.2|ENSG00000248771.1|RP11-294O2.2
hg19_v2_chr1_+_117297007_117297099	0.14136	FOXA2_FOXJ3	ENST00000369478.3|CD2|ENSG00000116824.4|CD2 molecule 	ENST00000369477.1|CD2|ENSG00000116824.4|CD2 molecule
hg19_v2_chr6_-_161085291_161085308	0.141292	FOXA2_FOXJ3	ENST00000316300.5|LPA|ENSG00000198670.7|lipoprotein, Lp(a)
hg19_v2_chr1_+_24646002_24646056	0.141021	FOXA2_FOXJ3	ENST00000356046.2|GRHL3|ENSG00000158055.11|grainyhead-like 3 (Drosophila)
hg19_v2_chr1_-_20126365_20126414	0.138944	FOXA2_FOXJ3	ENST00000294543.6|TMCO4|ENSG00000162542.9|transmembrane and coiled-coil domains 4 	ENST00000375122.2|TMCO4|ENSG00000162542.9|transmembrane and coiled-coil domains 4
hg19_v2_chrX_+_153492665_153492665	0.137591	FOXA2_FOXJ3	ENST00000430419.1|OPN1MW2|ENSG00000166160.5|opsin 1 (cone pigments), medium-wave-sensitive 2
hg19_v2_chr2_-_161056762_161056799	0.137535	FOXA2_FOXJ3	ENST00000428609.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409967.2|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr3_+_98072698_98072698	0.137286	FOXA2_FOXJ3	ENST00000354924.2|OR5K4|ENSG00000196098.2|olfactory receptor, family 5, subfamily K, member 4
hg19_v2_chr15_+_49462434_49462488	0.136865	FOXA2_FOXJ3	ENST00000558145.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000543495.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000544523.1|GALK2|ENSG00000156958.10|galactokinase 2 	ENST00000560138.1|GALK2|ENSG00000156958.10|galactokinase 2
hg19_v2_chr4_-_23735183_23735202	0.136529	FOXA2_FOXJ3	ENST00000507666.1|RP11-380P13.2|ENSG00000251292.1|RP11-380P13.2
hg19_v2_chr6_-_32160622_32160719	0.136443	FOXA2_FOXJ3	ENST00000487761.1|GPSM3|ENSG00000213654.5|G-protein signaling modulator 3 	ENST00000375040.3|GPSM3|ENSG00000213654.5|G-protein signaling modulator 3
hg19_v2_chr13_-_41240717_41240735	0.136162	FOXA2_FOXJ3	ENST00000379561.5|FOXO1|ENSG00000150907.6|forkhead box O1
hg19_v2_chr10_+_96698406_96698428	0.135962	FOXA2_FOXJ3	ENST00000260682.6|CYP2C9|ENSG00000138109.9|cytochrome P450, family 2, subfamily C, polypeptide 9
hg19_v2_chr2_+_201450591_201450680	0.135849	FOXA2_FOXJ3	ENST00000374700.2|AOX1|ENSG00000138356.9|aldehyde oxidase 1
hg19_v2_chr5_+_96212185_96212210	0.13523	FOXA2_FOXJ3	ENST00000379904.4|ERAP2|ENSG00000164308.12|endoplasmic reticulum aminopeptidase 2
hg19_v2_chrX_+_153455547_153455547	0.134624	FOXA2_FOXJ3	ENST00000430054.1|OPN1MW|ENSG00000147380.6|opsin 1 (cone pigments), medium-wave-sensitive
hg19_v2_chr11_+_22696314_22696332	0.134468	FOXA2_FOXJ3	ENST00000532398.1|GAS2|ENSG00000148935.6|growth arrest-specific 2 	ENST00000433790.1|GAS2|ENSG00000148935.6|growth arrest-specific 2
hg19_v2_chr2_+_201170596_201170619	0.134142	FOXA2_FOXJ3	ENST00000439084.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like 	ENST00000409718.1|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr13_+_75126978_75126988	0.132793	FOXA2_FOXJ3	ENST00000596240.1|LINC00347|ENSG00000236678.3|long intergenic non-protein coding RNA 347 	ENST00000451336.2|LINC00347|ENSG00000236678.3|long intergenic non-protein coding RNA 347
hg19_v2_chr2_-_175260368_175260450	0.132633	FOXA2_FOXJ3	ENST00000342016.3|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1 	ENST00000362053.5|CIR1|ENSG00000138433.11|corepressor interacting with RBPJ, 1
hg19_v2_chr11_+_65101225_65101359	0.132193	FOXA2_FOXJ3	ENST00000528416.1|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2 	ENST00000415073.2|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2 	ENST00000252268.4|DPF2|ENSG00000133884.5|D4, zinc and double PHD fingers family 2
hg19_v2_chr5_-_36301984_36302010	0.131856	FOXA2_FOXJ3	ENST00000502994.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000515759.1|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like 	ENST00000296604.3|RANBP3L|ENSG00000164188.4|RAN binding protein 3-like
hg19_v2_chr1_-_114429997_114430077	0.131334	FOXA2_FOXJ3	ENST00000471267.1|BCL2L15|ENSG00000188761.7|BCL2-like 15 	ENST00000393320.3|BCL2L15|ENSG00000188761.7|BCL2-like 15
hg19_v2_chr14_-_31926623_31926656	0.130418	FOXA2_FOXJ3	ENST00000356180.4|DTD2|ENSG00000129480.8|D-tyrosyl-tRNA deacylase 2 (putative)
hg19_v2_chr11_-_26593677_26593708	0.129845	FOXA2_FOXJ3	ENST00000527569.1|MUC15|ENSG00000169550.8|mucin 15, cell surface associated
hg19_v2_chr16_+_6069072_6069132	0.129588	FOXA2_FOXJ3	ENST00000547605.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000550418.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1 	ENST00000553186.1|RBFOX1|ENSG00000078328.15|RNA binding protein, fox-1 homolog (C. elegans) 1
hg19_v2_chr7_-_14028488_14028516	0.129573	FOXA2_FOXJ3	ENST00000405358.4|ETV1|ENSG00000006468.9|ets variant 1
hg19_v2_chr8_-_93978357_93978379	0.129048	FOXA2_FOXJ3	ENST00000522925.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000522903.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000537541.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000518748.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000519069.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000521988.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr3_+_171561127_171561306	0.12864	FOXA2_FOXJ3	ENST00000334567.5|TMEM212|ENSG00000186329.5|transmembrane protein 212 	ENST00000450693.1|TMEM212|ENSG00000186329.5|transmembrane protein 212
hg19_v2_chr16_+_29467780_29467780	0.127049	FOXA2_FOXJ3	ENST00000395400.3|SULT1A4|ENSG00000213648.6|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 4
hg19_v2_chr12_+_21679220_21679252	0.126163	FOXA2_FOXJ3	ENST00000256969.2|C12orf39|ENSG00000134548.5|chromosome 12 open reading frame 39
hg19_v2_chr16_+_30207122_30207122	0.125983	FOXA2_FOXJ3	ENST00000395137.2|SULT1A3|ENSG00000261052.1|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 3
hg19_v2_chr20_+_45338126_45338303	0.125663	FOXA2_FOXJ3	ENST00000359271.2|SLC2A10|ENSG00000197496.4|solute carrier family 2 (facilitated glucose transporter), member 10
hg19_v2_chr3_-_49066811_49066851	0.125354	FOXA2_FOXJ3	ENST00000442157.1|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2 	ENST00000326739.4|IMPDH2|ENSG00000178035.7|IMP (inosine 5'-monophosphate) dehydrogenase 2
hg19_v2_chr16_-_86542455_86542500	0.125118	FOXA2_FOXJ3	ENST00000595886.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000597578.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA 	ENST00000593604.1|FENDRR|ENSG00000268388.1|FOXF1 adjacent non-coding developmental regulatory RNA
hg19_v2_chr7_+_26332645_26332674	0.12489	FOXA2_FOXJ3	ENST00000396376.1|SNX10|ENSG00000086300.11|sorting nexin 10
hg19_v2_chr12_+_49297899_49297955	0.124876	FOXA2_FOXJ3	ENST00000552942.1|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65 	ENST00000320516.4|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chr11_-_26593779_26593795	0.124094	FOXA2_FOXJ3	ENST00000529533.1|MUC15|ENSG00000169550.8|mucin 15, cell surface associated
hg19_v2_chr8_-_134309335_134309503	0.123053	FOXA2_FOXJ3	ENST00000522890.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000323851.7|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000518176.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000354944.5|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000537882.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000522476.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000518066.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000521544.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000518480.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1 	ENST00000523892.1|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1
hg19_v2_chr7_+_12250886_12250933	0.123038	FOXA2_FOXJ3	ENST00000444443.1|TMEM106B|ENSG00000106460.14|transmembrane protein 106B 	ENST00000396667.3|TMEM106B|ENSG00000106460.14|transmembrane protein 106B
hg19_v2_chr20_+_59654146_59654196	0.122287	FOXA2_FOXJ3	ENST00000441660.1|RP5-827L5.1|ENSG00000229606.1|RP5-827L5.1
hg19_v2_chr7_+_106505696_106505798	0.121389	FOXA2_FOXJ3	ENST00000440650.2|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000496166.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma 	ENST00000473541.1|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr4_+_159236462_159236471	0.121011	FOXA2_FOXJ3	ENST00000460056.2|RXFP1|ENSG00000171509.11|relaxin/insulin-like family peptide receptor 1
hg19_v2_chr4_+_86525299_86525314	0.1202	FOXA2_FOXJ3	ENST00000512201.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr13_-_53024725_53024809	0.11934	FOXA2_FOXJ3	ENST00000378060.4|VPS36|ENSG00000136100.8|vacuolar protein sorting 36 homolog (S. cerevisiae)
hg19_v2_chr7_-_25702669_25702678	0.1193	FOXA2_FOXJ3	ENST00000446840.1|AC003090.1|ENSG00000223561.2|AC003090.1
hg19_v2_chr4_+_86749045_86749070	0.11761	FOXA2_FOXJ3	ENST00000514229.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr14_-_60632162_60632211	0.117422	FOXA2_FOXJ3	ENST00000557185.1|DHRS7|ENSG00000100612.9|dehydrogenase/reductase (SDR family) member 7
hg19_v2_chr14_+_58894103_58894124	0.117312	FOXA2_FOXJ3	ENST00000354386.6|KIAA0586|ENSG00000100578.10|KIAA0586 	ENST00000556134.1|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr3_+_119316721_119316739	0.115846	FOXA2_FOXJ3	ENST00000488919.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A 	ENST00000495992.1|PLA1A|ENSG00000144837.4|phospholipase A1 member A
hg19_v2_chr1_+_3614591_3614622	0.115221	FOXA2_FOXJ3	ENST00000378290.4|TP73|ENSG00000078900.10|tumor protein p73
hg19_v2_chr10_+_101088836_101088861	0.114561	FOXA2_FOXJ3	ENST00000356713.4|CNNM1|ENSG00000119946.9|cyclin M1
hg19_v2_chr2_+_114195268_114195340	0.114035	FOXA2_FOXJ3	ENST00000259199.4|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000416503.2|CBWD2|ENSG00000136682.10|COBW domain containing 2 	ENST00000433343.2|CBWD2|ENSG00000136682.10|COBW domain containing 2
hg19_v2_chr9_+_120466610_120466628	0.113521	FOXA2_FOXJ3	ENST00000394487.4|TLR4|ENSG00000136869.13|toll-like receptor 4
hg19_v2_chr2_-_55920952_55921045	0.113486	FOXA2_FOXJ3	ENST00000447944.2|PNPT1|ENSG00000138035.10|polyribonucleotide nucleotidyltransferase 1
hg19_v2_chr14_+_58894706_58894720	0.113307	FOXA2_FOXJ3	ENST00000261244.5|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr16_-_740419_740444	0.112855	FOXA2_FOXJ3	ENST00000248142.6|WDR24|ENSG00000127580.11|WD repeat domain 24
hg19_v2_chr5_+_101569696_101569696	0.112709	FOXA2_FOXJ3	ENST00000597120.1|AC008948.1|ENSG00000268424.1|AC008948.1
hg19_v2_chr2_-_179567206_179567260	0.112048	FOXA2_FOXJ3	ENST00000414766.1|TTN|ENSG00000155657.19|titin
hg19_v2_chr10_-_129691195_129691212	0.111554	FOXA2_FOXJ3	ENST00000368671.3|CLRN3|ENSG00000180745.4|clarin 3
hg19_v2_chr3_+_148447887_148447911	0.111139	FOXA2_FOXJ3	ENST00000475347.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000474935.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000461609.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr16_-_740354_740416	0.110768	FOXA2_FOXJ3	ENST00000293883.4|WDR24|ENSG00000127580.11|WD repeat domain 24
hg19_v2_chr17_-_41050716_41050751	0.110557	FOXA2_FOXJ3	ENST00000417193.1|LINC00671|ENSG00000213373.3|long intergenic non-protein coding RNA 671 	ENST00000301683.3|LINC00671|ENSG00000213373.3|long intergenic non-protein coding RNA 671 	ENST00000436546.1|LINC00671|ENSG00000213373.3|long intergenic non-protein coding RNA 671 	ENST00000431109.2|LINC00671|ENSG00000213373.3|long intergenic non-protein coding RNA 671
hg19_v2_chr19_-_40030861_40030873	0.109902	FOXA2_FOXJ3	ENST00000390658.2|EID2|ENSG00000176396.9|EP300 interacting inhibitor of differentiation 2
hg19_v2_chr4_+_26862313_26862334	0.109638	FOXA2_FOXJ3	ENST00000467087.1|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000382009.3|STIM2|ENSG00000109689.10|stromal interaction molecule 2 	ENST00000237364.5|STIM2|ENSG00000109689.10|stromal interaction molecule 2
hg19_v2_chr10_+_94352956_94353043	0.109326	FOXA2_FOXJ3	ENST00000260731.3|KIF11|ENSG00000138160.4|kinesin family member 11
hg19_v2_chr2_+_96257766_96257766	0.108656	FOXA2_FOXJ3	ENST00000272395.2|TRIM43|ENSG00000144015.4|tripartite motif containing 43
hg19_v2_chr4_+_71494461_71494461	0.106117	FOXA2_FOXJ3	ENST00000396073.3|ENAM|ENSG00000132464.7|enamelin
hg19_v2_chr2_-_71454185_71454242	0.10606	FOXA2_FOXJ3	ENST00000244221.8|PAIP2B|ENSG00000124374.8|poly(A) binding protein interacting protein 2B
hg19_v2_chr11_-_26593649_26593670	0.105957	FOXA2_FOXJ3	ENST00000455601.2|MUC15|ENSG00000169550.8|mucin 15, cell surface associated
hg19_v2_chr14_+_35747825_35747847	0.105689	FOXA2_FOXJ3	ENST00000540871.1|PSMA6|ENSG00000100902.6|proteasome (prosome, macropain) subunit, alpha type, 6
hg19_v2_chr4_-_140005443_140005650	0.105477	FOXA2_FOXJ3	ENST00000510408.1|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000420916.2|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor) 	ENST00000358635.3|ELF2|ENSG00000109381.15|E74-like factor 2 (ets domain transcription factor)
hg19_v2_chr16_+_22517166_22517166	0.10473	FOXA2_FOXJ3	ENST00000356156.3|NPIPB5|ENSG00000243716.6|nuclear pore complex interacting protein family, member B5
hg19_v2_chr10_-_50396425_50396450	0.103391	FOXA2_FOXJ3	ENST00000374148.1|C10orf128|ENSG00000204161.9|chromosome 10 open reading frame 128
hg19_v2_chr9_-_21351377_21351377	0.103326	FOXA2_FOXJ3	ENST00000380210.1|IFNA6|ENSG00000120235.3|interferon, alpha 6
hg19_v2_chr7_+_106505912_106505931	0.102611	FOXA2_FOXJ3	ENST00000359195.3|PIK3CG|ENSG00000105851.6|phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit gamma
hg19_v2_chr10_+_90672113_90672113	0.102182	FOXA2_FOXJ3	ENST00000371922.1|STAMBPL1|ENSG00000138134.7|STAM binding protein-like 1
hg19_v2_chr12_+_40787194_40787197	0.10204	FOXA2_FOXJ3	ENST00000425730.2|MUC19|ENSG00000205592.9|mucin 19, oligomeric 	ENST00000454784.4|MUC19|ENSG00000205592.9|mucin 19, oligomeric
hg19_v2_chr4_+_57845024_57845037	0.100641	FOXA2_FOXJ3	ENST00000431623.2|POLR2B|ENSG00000047315.10|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa 	ENST00000441246.2|POLR2B|ENSG00000047315.10|polymerase (RNA) II (DNA directed) polypeptide B, 140kDa
hg19_v2_chrX_+_198129_198173	0.100157	FOXA2_FOXJ3	ENST00000381663.3|PLCXD1|ENSG00000182378.8|phosphatidylinositol-specific phospholipase C, X domain containing 1
hg19_v2_chr9_+_139702363_139702413	0.099936	FOXA2_FOXJ3	ENST00000371663.4|RABL6|ENSG00000196642.11|RAB, member RAS oncogene family-like 6 	ENST00000371671.4|RABL6|ENSG00000196642.11|RAB, member RAS oncogene family-like 6 	ENST00000311502.7|RABL6|ENSG00000196642.11|RAB, member RAS oncogene family-like 6
hg19_v2_chr1_-_43855479_43855486	0.0989559	FOXA2_FOXJ3	ENST00000290663.6|MED8|ENSG00000159479.12|mediator complex subunit 8 	ENST00000372457.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr21_-_33975547_33975601	0.0983243	FOXA2_FOXJ3	ENST00000431599.1|C21orf59|ENSG00000159079.14|chromosome 21 open reading frame 59
hg19_v2_chr5_+_159614374_159614397	0.097486	FOXA2_FOXJ3	ENST00000393980.4|FABP6|ENSG00000170231.11|fatty acid binding protein 6, ileal
hg19_v2_chr11_-_34535297_34535317	0.0974371	FOXA2_FOXJ3	ENST00000532417.1|ELF5|ENSG00000135374.5|E74-like factor 5 (ets domain transcription factor)
hg19_v2_chr9_+_27109392_27109435	0.0970529	FOXA2_FOXJ3	ENST00000406359.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chrX_-_108725301_108725319	0.0954109	FOXA2_FOXJ3	ENST00000218006.2|GUCY2F|ENSG00000101890.4|guanylate cyclase 2F, retinal
hg19_v2_chr16_+_66442411_66442461	0.0952543	FOXA2_FOXJ3	ENST00000499966.1|LINC00920|ENSG00000246898.1|long intergenic non-protein coding RNA 920
hg19_v2_chr1_-_161193349_161193424	0.0946015	FOXA2_FOXJ3	ENST00000469730.2|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000463273.1|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000464492.1|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000367990.3|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000470459.2|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000468465.1|APOA2|ENSG00000158874.7|apolipoprotein A-II 	ENST00000463812.1|APOA2|ENSG00000158874.7|apolipoprotein A-II
hg19_v2_chr13_+_109248500_109248524	0.0935797	FOXA2_FOXJ3	ENST00000356711.2|MYO16|ENSG00000041515.11|myosin XVI
hg19_v2_chr11_-_55703876_55703876	0.0933212	FOXA2_FOXJ3	ENST00000301532.3|OR5I1|ENSG00000167825.3|olfactory receptor, family 5, subfamily I, member 1
hg19_v2_chr1_+_206579736_206579736	0.0927249	FOXA2_FOXJ3	ENST00000439126.1|SRGAP2|ENSG00000163486.8|SLIT-ROBO Rho GTPase activating protein 2
hg19_v2_chr8_-_134309823_134309841	0.0916133	FOXA2_FOXJ3	ENST00000414097.2|NDRG1|ENSG00000104419.10|N-myc downstream regulated 1
hg19_v2_chr16_-_28374829_28374829	0.0915315	FOXA2_FOXJ3	ENST00000532254.1|NPIPB6|ENSG00000198156.6|nuclear pore complex interacting protein family, member B6
hg19_v2_chr19_-_19932501_19932569	0.0913694	FOXA2_FOXJ3	ENST00000540806.2|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000590766.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000587452.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000590274.1|CTC-559E9.4|ENSG00000267581.1|CTC-559E9.4	ENST00000545006.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000590319.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000587461.1|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000450683.2|ZNF506|ENSG00000081665.9|zinc finger protein 506 	ENST00000443905.2|ZNF506|ENSG00000081665.9|zinc finger protein 506
hg19_v2_chr20_+_58630972_58630987	0.0903555	FOXA2_FOXJ3	ENST00000313426.1|C20orf197|ENSG00000176659.5|chromosome 20 open reading frame 197
hg19_v2_chr3_+_151451707_151451722	0.0901171	FOXA2_FOXJ3	ENST00000356517.3|AADACL2|ENSG00000197953.5|arylacetamide deacetylase-like 2
hg19_v2_chr16_-_30621663_30621718	0.089947	FOXA2_FOXJ3	ENST00000287461.3|ZNF689|ENSG00000156853.7|zinc finger protein 689
hg19_v2_chr16_+_30064444_30064528	0.0891119	FOXA2_FOXJ3	ENST00000395248.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000566897.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate 	ENST00000568435.1|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr10_+_24755416_24755470	0.0887073	FOXA2_FOXJ3	ENST00000396446.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000396445.1|KIAA1217|ENSG00000120549.11|KIAA1217 	ENST00000376451.2|KIAA1217|ENSG00000120549.11|KIAA1217
hg19_v2_chr15_-_54051831_54051904	0.0887072	FOXA2_FOXJ3	ENST00000557913.1|WDR72|ENSG00000166415.10|WD repeat domain 72 	ENST00000360509.5|WDR72|ENSG00000166415.10|WD repeat domain 72
hg19_v2_chr4_-_123377880_123377880	0.088192	FOXA2_FOXJ3	ENST00000226730.4|IL2|ENSG00000109471.4|interleukin 2
hg19_v2_chr12_-_49582978_49583107	0.0880714	FOXA2_FOXJ3	ENST00000301071.7|TUBA1A|ENSG00000167552.9|tubulin, alpha 1a
hg19_v2_chr2_+_110551851_110551977	0.0875765	FOXA2_FOXJ3	ENST00000272454.6|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000430736.1|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000016946.3|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5 	ENST00000441344.1|RGPD5|ENSG00000015568.8|RANBP2-like and GRIP domain containing 5
hg19_v2_chr9_+_127962856_127962884	0.0873921	FOXA2_FOXJ3	ENST00000373538.3|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs 	ENST00000416065.1|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs
hg19_v2_chr12_+_2986359_2986421	0.0872295	FOXA2_FOXJ3	ENST00000538636.1|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000461997.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000489288.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000366285.2|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1 	ENST00000538700.1|RHNO1|ENSG00000171792.6|RAD9-HUS1-RAD1 interacting nuclear orphan 1
hg19_v2_chr14_+_56127989_56128008	0.0871278	FOXA2_FOXJ3	ENST00000555573.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr20_+_48552908_48552949	0.0870804	FOXA2_FOXJ3	ENST00000244061.2|RNF114|ENSG00000124226.7|ring finger protein 114
hg19_v2_chr2_+_149402553_149402568	0.0864348	FOXA2_FOXJ3	ENST00000258484.6|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila) 	ENST00000409654.1|EPC2|ENSG00000135999.7|enhancer of polycomb homolog 2 (Drosophila)
hg19_v2_chr4_-_70518941_70518967	0.0864125	FOXA2_FOXJ3	ENST00000286604.4|UGT2A1|ENSG00000173610.7|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus 	ENST00000505512.1|UGT2A1|ENSG00000173610.7|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus 	ENST00000514019.1|UGT2A1|ENSG00000270386.1|UDP glucuronosyltransferase 2 family, polypeptide A1, complex locus
hg19_v2_chr1_-_241799232_241799232	0.0854794	FOXA2_FOXJ3	ENST00000366553.1|CHML|ENSG00000203668.1|choroideremia-like (Rab escort protein 2)
hg19_v2_chr1_+_15764931_15764945	0.0849183	FOXA2_FOXJ3	ENST00000375949.4|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin) 	ENST00000375943.2|CTRC|ENSG00000162438.7|chymotrypsin C (caldecrin)
hg19_v2_chr12_-_10324716_10324742	0.083527	FOXA2_FOXJ3	ENST00000545927.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000432556.2|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000309539.3|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1 	ENST00000544577.1|OLR1|ENSG00000173391.4|oxidized low density lipoprotein (lectin-like) receptor 1
hg19_v2_chr2_-_172750733_172750762	0.0830311	FOXA2_FOXJ3	ENST00000392592.4|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12 	ENST00000422440.2|SLC25A12|ENSG00000115840.9|solute carrier family 25 (aspartate/glutamate carrier), member 12
hg19_v2_chr2_+_201171064_201171099	0.0823361	FOXA2_FOXJ3	ENST00000451764.2|SPATS2L|ENSG00000196141.8|spermatogenesis associated, serine-rich 2-like
hg19_v2_chr13_-_99910673_99910682	0.0820832	FOXA2_FOXJ3	ENST00000397473.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18 	ENST00000397470.2|GPR18|ENSG00000125245.8|G protein-coupled receptor 18
hg19_v2_chr15_+_42697018_42697035	0.0818353	FOXA2_FOXJ3	ENST00000397204.4|CAPN3|ENSG00000092529.18|calpain 3, (p94)
hg19_v2_chr12_-_76879852_76879888	0.0815859	FOXA2_FOXJ3	ENST00000548341.1|OSBPL8|ENSG00000091039.12|oxysterol binding protein-like 8
hg19_v2_chr7_+_149570049_149570057	0.080566	FOXA2_FOXJ3	ENST00000421974.2|ATP6V0E2|ENSG00000171130.13|ATPase, H+ transporting V0 subunit e2 	ENST00000456496.2|ATP6V0E2|ENSG00000171130.13|ATPase, H+ transporting V0 subunit e2
hg19_v2_chr14_-_102605983_102606042	0.0803494	FOXA2_FOXJ3	ENST00000334701.7|HSP90AA1|ENSG00000080824.14|heat shock protein 90kDa alpha (cytosolic), class A member 1
hg19_v2_chr19_-_48614063_48614093	0.0801557	FOXA2_FOXJ3	ENST00000599921.1|PLA2G4C|ENSG00000105499.9|phospholipase A2, group IVC (cytosolic, calcium-independent) 	ENST00000599111.1|PLA2G4C|ENSG00000105499.9|phospholipase A2, group IVC (cytosolic, calcium-independent)
hg19_v2_chr11_-_129765427_129765492	0.0800266	FOXA2_FOXJ3	ENST00000526884.1|NFRKB|ENSG00000170322.10|nuclear factor related to kappaB binding protein 	ENST00000532225.1|NFRKB|ENSG00000170322.10|nuclear factor related to kappaB binding protein 	ENST00000529319.1|NFRKB|ENSG00000170322.10|nuclear factor related to kappaB binding protein
hg19_v2_chrX_+_78003204_78003248	0.0785664	FOXA2_FOXJ3	ENST00000435339.3|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4 	ENST00000514744.1|LPAR4|ENSG00000147145.8|lysophosphatidic acid receptor 4
hg19_v2_chr4_+_15376165_15376178	0.0779726	FOXA2_FOXJ3	ENST00000382383.3|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000429690.1|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr2_-_179516225_179516249	0.0772037	FOXA2_FOXJ3	ENST00000446966.1|TTN|ENSG00000155657.19|titin 	ENST00000426232.1|TTN|ENSG00000155657.19|titin
hg19_v2_chr8_-_30585439_30585494	0.077183	FOXA2_FOXJ3	ENST00000221130.5|GSR|ENSG00000104687.8|glutathione reductase
hg19_v2_chr16_+_28763108_28763108	0.0771296	FOXA2_FOXJ3	ENST00000357796.3|NPIPB9|ENSG00000196993.4|nuclear pore complex interacting protein family, member B9 	ENST00000550983.1|NPIPB9|ENSG00000196993.4|nuclear pore complex interacting protein family, member B9
hg19_v2_chr1_+_3607228_3607250	0.0768971	FOXA2_FOXJ3	ENST00000378285.1|TP73|ENSG00000078900.10|tumor protein p73 	ENST00000378280.1|TP73|ENSG00000078900.10|tumor protein p73 	ENST00000378288.4|TP73|ENSG00000078900.10|tumor protein p73
hg19_v2_chr9_-_116837249_116837318	0.076666	FOXA2_FOXJ3	ENST00000466610.2|AMBP|ENSG00000106927.7|alpha-1-microglobulin/bikunin precursor
hg19_v2_chr16_+_30064411_30064428	0.0751758	FOXA2_FOXJ3	ENST00000338110.5|ALDOA|ENSG00000149925.12|aldolase A, fructose-bisphosphate
hg19_v2_chr1_-_1342617_1342693	0.0743843	FOXA2_FOXJ3	ENST00000482352.1|MRPL20|ENSG00000242485.1|mitochondrial ribosomal protein L20 	ENST00000344843.7|MRPL20|ENSG00000242485.1|mitochondrial ribosomal protein L20
hg19_v2_chr1_+_203765437_203765437	0.0736314	FOXA2_FOXJ3	ENST00000550078.1|ZBED6|ENSG00000257315.1|zinc finger, BED-type containing 6
hg19_v2_chr7_+_99425633_99425739	0.0728104	FOXA2_FOXJ3	ENST00000354829.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000421837.2|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000417625.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000342499.4|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000444905.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000415413.1|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000312017.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43 	ENST00000222382.5|CYP3A43|ENSG00000021461.12|cytochrome P450, family 3, subfamily A, polypeptide 43
hg19_v2_chr5_-_55529115_55529186	0.0714949	FOXA2_FOXJ3	ENST00000513241.2|ANKRD55|ENSG00000164512.13|ankyrin repeat domain 55 	ENST00000341048.4|ANKRD55|ENSG00000164512.13|ankyrin repeat domain 55
hg19_v2_chr19_-_48614033_48614048	0.0712869	FOXA2_FOXJ3	ENST00000354276.3|PLA2G4C|ENSG00000105499.9|phospholipase A2, group IVC (cytosolic, calcium-independent)
hg19_v2_chr5_+_140186647_140186773	0.071095	FOXA2_FOXJ3	ENST00000512229.2|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000356878.4|PCDHA4|ENSG00000204967.6|protocadherin alpha 4 	ENST00000530339.1|PCDHA4|ENSG00000204967.6|protocadherin alpha 4
hg19_v2_chr17_-_39183452_39183468	0.0709802	FOXA2_FOXJ3	ENST00000361883.5|KRTAP1-5|ENSG00000221852.4|keratin associated protein 1-5
hg19_v2_chr14_+_56078695_56078784	0.0707433	FOXA2_FOXJ3	ENST00000416613.1|KTN1|ENSG00000126777.13|kinectin 1 (kinesin receptor)
hg19_v2_chr9_-_117420052_117420092	0.0703918	FOXA2_FOXJ3	ENST00000423632.1|RP11-402G3.5|ENSG00000230054.1|RP11-402G3.5
hg19_v2_chr3_-_156272872_156272923	0.069914	FOXA2_FOXJ3	ENST00000476217.1|SSR3|ENSG00000114850.2|signal sequence receptor, gamma (translocon-associated protein gamma)
hg19_v2_chr19_-_46148820_46148887	0.0695218	FOXA2_FOXJ3	ENST00000587152.1|EML2|ENSG00000125746.10|echinoderm microtubule associated protein like 2
hg19_v2_chr17_-_26301249_26301266	0.0694974	FOXA2_FOXJ3	ENST00000567574.1|RP11-218F4.1|ENSG00000260019.1|RP11-218F4.1
hg19_v2_chr8_-_93978346_93978355	0.0688463	FOXA2_FOXJ3	ENST00000523580.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr1_-_145610869_145610942	0.06826	FOXA2_FOXJ3	ENST00000334163.3|POLR3C|ENSG00000186141.4|polymerase (RNA) III (DNA directed) polypeptide C (62kD) 	ENST00000369294.1|POLR3C|ENSG00000186141.4|polymerase (RNA) III (DNA directed) polypeptide C (62kD)
hg19_v2_chr6_+_97372596_97372644	0.0678873	FOXA2_FOXJ3	ENST00000369261.4|KLHL32|ENSG00000186231.12|kelch-like family member 32
hg19_v2_chr8_-_93978333_93978345	0.0678546	FOXA2_FOXJ3	ENST00000524037.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000520430.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000521617.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr4_+_88720698_88720733	0.0677569	FOXA2_FOXJ3	ENST00000226284.5|IBSP|ENSG00000029559.5|integrin-binding sialoprotein
hg19_v2_chr2_-_111334678_111334762	0.0672633	FOXA2_FOXJ3	ENST00000329516.3|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6 	ENST00000330331.5|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6 	ENST00000446930.1|RGPD6|ENSG00000183054.7|RANBP2-like and GRIP domain containing 6
hg19_v2_chr6_-_131949305_131949389	0.0672268	FOXA2_FOXJ3	ENST00000368053.4|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000354577.4|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000403834.3|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000540546.1|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000368068.3|MED23|ENSG00000112282.13|mediator complex subunit 23 	ENST00000368060.3|MED23|ENSG00000112282.13|mediator complex subunit 23
hg19_v2_chr19_-_40732594_40732598	0.0670923	FOXA2_FOXJ3	ENST00000430325.2|CNTD2|ENSG00000105219.4|cyclin N-terminal domain containing 2 	ENST00000433940.1|CNTD2|ENSG00000105219.4|cyclin N-terminal domain containing 2
hg19_v2_chr12_+_59989918_59989965	0.0665126	FOXA2_FOXJ3	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chr14_+_58894141_58894155	0.0658743	FOXA2_FOXJ3	ENST00000423743.3|KIAA0586|ENSG00000100578.10|KIAA0586
hg19_v2_chr18_+_21033239_21033302	0.0658154	FOXA2_FOXJ3	ENST00000581585.1|RIOK3|ENSG00000101782.10|RIO kinase 3 	ENST00000577501.1|RIOK3|ENSG00000101782.10|RIO kinase 3
hg19_v2_chr14_+_22636283_22636325	0.0657633	FOXA2_FOXJ3	ENST00000557168.1|TRAV30|ENSG00000259092.1|T cell receptor alpha variable 30
hg19_v2_chr14_+_50234827_50234886	0.0657361	FOXA2_FOXJ3	ENST00000554589.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2 	ENST00000557247.1|KLHDC2|ENSG00000165516.6|kelch domain containing 2
hg19_v2_chr5_+_176853669_176853701	0.0649967	FOXA2_FOXJ3	ENST00000355472.5|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6
hg19_v2_chr9_+_127962841_127962855	0.0641749	FOXA2_FOXJ3	ENST00000394124.4|RABEPK|ENSG00000136933.12|Rab9 effector protein with kelch motifs
hg19_v2_chr16_+_77233294_77233341	0.0638443	FOXA2_FOXJ3	ENST00000378644.4|SYCE1L|ENSG00000205078.5|synaptonemal complex central element protein 1-like
hg19_v2_chr8_+_27632083_27632186	0.0633244	FOXA2_FOXJ3	ENST00000519637.1|ESCO2|ENSG00000171320.10|establishment of sister chromatid cohesion N-acetyltransferase 2
hg19_v2_chr19_-_5978144_5978159	0.0627313	FOXA2_FOXJ3	ENST00000340578.6|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000541471.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000591736.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000587479.1|RANBP3|ENSG00000031823.10|RAN binding protein 3
hg19_v2_chr3_-_105588231_105588396	0.0625577	FOXA2_FOXJ3	ENST00000545639.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000394027.3|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000438603.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000447441.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase 	ENST00000443752.1|CBLB|ENSG00000114423.14|Cbl proto-oncogene B, E3 ubiquitin protein ligase
hg19_v2_chr14_-_60632011_60632035	0.0625235	FOXA2_FOXJ3	ENST00000554101.1|DHRS7|ENSG00000100612.9|dehydrogenase/reductase (SDR family) member 7 	ENST00000557137.1|DHRS7|ENSG00000100612.9|dehydrogenase/reductase (SDR family) member 7
hg19_v2_chr14_-_95624227_95624347	0.0624018	FOXA2_FOXJ3	ENST00000526495.1|DICER1|ENSG00000100697.10|dicer 1, ribonuclease type III
hg19_v2_chr4_+_70861647_70861691	0.0617606	FOXA2_FOXJ3	ENST00000246895.4|STATH|ENSG00000126549.5|statherin 	ENST00000381060.2|STATH|ENSG00000126549.5|statherin
hg19_v2_chr15_+_57998923_57998934	0.0612464	FOXA2_FOXJ3	ENST00000380557.4|POLR2M|ENSG00000255529.3|polymerase (RNA) II (DNA directed) polypeptide M
hg19_v2_chr4_-_122854612_122854612	0.0600935	FOXA2_FOXJ3	ENST00000264811.5|TRPC3|ENSG00000138741.6|transient receptor potential cation channel, subfamily C, member 3
hg19_v2_chr17_-_60883993_60884014	0.0598468	FOXA2_FOXJ3	ENST00000583803.1|MARCH10|ENSG00000173838.7|membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase 	ENST00000456609.2|MARCH10|ENSG00000173838.7|membrane-associated ring finger (C3HC4) 10, E3 ubiquitin protein ligase
hg19_v2_chr22_-_43036607_43036607	0.059528	FOXA2_FOXJ3	ENST00000505920.1|ATP5L2|ENSG00000249222.1|ATP synthase, H+ transporting, mitochondrial Fo complex, subunit G2
hg19_v2_chr4_+_71337834_71337921	0.0587712	FOXA2_FOXJ3	ENST00000304887.5|MUC7|ENSG00000171195.6|mucin 7, secreted
hg19_v2_chr3_-_139195350_139195370	0.0577354	FOXA2_FOXJ3	ENST00000232217.2|RBP2|ENSG00000114113.2|retinol binding protein 2, cellular
hg19_v2_chr4_+_69313145_69313167	0.0576227	FOXA2_FOXJ3	ENST00000305363.4|TMPRSS11E|ENSG00000087128.5|transmembrane protease, serine 11E
hg19_v2_chr19_-_40791302_40791443	0.057444	FOXA2_FOXJ3	ENST00000392038.2|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2 	ENST00000578123.1|AKT2|ENSG00000105221.12|v-akt murine thymoma viral oncogene homolog 2
hg19_v2_chr17_+_41363854_41363916	0.0572373	FOXA2_FOXJ3	ENST00000588693.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000588659.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000541594.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000536052.1|TMEM106A|ENSG00000184988.4|transmembrane protein 106A 	ENST00000331615.3|TMEM106A|ENSG00000184988.4|transmembrane protein 106A
hg19_v2_chr20_+_52105495_52105495	0.0571268	FOXA2_FOXJ3	ENST00000439873.2|AL354993.1|ENSG00000227164.2|Cell growth-inhibiting protein 7; HCG1784586; Uncharacterized protein
hg19_v2_chr1_+_198608146_198608247	0.0570014	FOXA2_FOXJ3	ENST00000367376.2|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000352140.3|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000594404.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000598951.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000530727.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000442510.2|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000367367.4|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000348564.6|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000367364.1|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C 	ENST00000413409.2|PTPRC|ENSG00000081237.14|protein tyrosine phosphatase, receptor type, C
hg19_v2_chr10_-_61720640_61720671	0.0566708	FOXA2_FOXJ3	ENST00000521074.1|C10orf40|ENSG00000235931.2|chromosome 10 open reading frame 40 	ENST00000444900.1|C10orf40|ENSG00000235931.2|chromosome 10 open reading frame 40
hg19_v2_chr12_+_49297887_49297898	0.0565052	FOXA2_FOXJ3	ENST00000266984.5|CCDC65|ENSG00000139537.6|coiled-coil domain containing 65
hg19_v2_chrX_+_15767971_15768093	0.0553191	FOXA2_FOXJ3	ENST00000479740.1|CA5B|ENSG00000169239.8|carbonic anhydrase VB, mitochondrial 	ENST00000454127.2|CA5B|ENSG00000169239.8|carbonic anhydrase VB, mitochondrial
hg19_v2_chr18_+_3449330_3449411	0.0549638	FOXA2_FOXJ3	ENST00000549253.1|TGIF1|ENSG00000177426.16|TGFB-induced factor homeobox 1
hg19_v2_chr5_-_110062384_110062450	0.0542992	FOXA2_FOXJ3	ENST00000429839.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr5_+_161275320_161275450	0.0542948	FOXA2_FOXJ3	ENST00000437025.2|GABRA1|ENSG00000022355.10|gamma-aminobutyric acid (GABA) A receptor, alpha 1
hg19_v2_chr10_+_97759848_97759883	0.0540777	FOXA2_FOXJ3	ENST00000424464.1|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000410012.2|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B 	ENST00000344386.3|CC2D2B|ENSG00000188649.7|coiled-coil and C2 domain containing 2B
hg19_v2_chr6_-_114194483_114194525	0.054015	FOXA2_FOXJ3	ENST00000434296.2|RP1-249H1.4|ENSG00000227502.2|RP1-249H1.4
hg19_v2_chr12_+_32832134_32832196	0.0535195	FOXA2_FOXJ3	ENST00000452533.2|DNM1L|ENSG00000087470.13|dynamin 1-like
hg19_v2_chr1_+_207669613_207669686	0.0526536	FOXA2_FOXJ3	ENST00000367049.4|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group) 	ENST00000529814.1|CR1|ENSG00000203710.6|complement component (3b/4b) receptor 1 (Knops blood group)
hg19_v2_chr20_-_1974692_1974732	0.0524072	FOXA2_FOXJ3	ENST00000217305.2|PDYN|ENSG00000101327.4|prodynorphin 	ENST00000539905.1|PDYN|ENSG00000101327.4|prodynorphin
hg19_v2_chr4_-_186456652_186456668	0.0523615	FOXA2_FOXJ3	ENST00000284767.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3 	ENST00000284770.5|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr1_+_239882842_239882850	0.0522543	FOXA2_FOXJ3	ENST00000448020.1|CHRM3|ENSG00000133019.7|cholinergic receptor, muscarinic 3
hg19_v2_chr11_-_9286921_9286937	0.0522071	FOXA2_FOXJ3	ENST00000328194.3|DENND5A|ENSG00000184014.3|DENN/MADD domain containing 5A
hg19_v2_chr3_-_108836977_108836989	0.0519936	FOXA2_FOXJ3	ENST00000232603.5|MORC1|ENSG00000114487.5|MORC family CW-type zinc finger 1
hg19_v2_chr2_+_3705785_3705806	0.0516721	FOXA2_FOXJ3	ENST00000252505.3|ALLC|ENSG00000151360.5|allantoicase
hg19_v2_chr19_-_5978090_5978129	0.0513644	FOXA2_FOXJ3	ENST00000592621.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000034275.8|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000591092.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000591333.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000590623.1|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000439268.2|RANBP3|ENSG00000031823.10|RAN binding protein 3 	ENST00000587159.1|RANBP3|ENSG00000031823.10|RAN binding protein 3
hg19_v2_chr18_-_52626622_52626739	0.05123	FOXA2_FOXJ3	ENST00000591504.1|CCDC68|ENSG00000166510.9|coiled-coil domain containing 68
hg19_v2_chr20_+_36322408_36322516	0.0509471	FOXA2_FOXJ3	ENST00000361383.6|CTNNBL1|ENSG00000132792.14|catenin, beta like 1 	ENST00000447935.1|CTNNBL1|ENSG00000132792.14|catenin, beta like 1 	ENST00000405275.2|CTNNBL1|ENSG00000132792.14|catenin, beta like 1
hg19_v2_chr1_+_145883868_145883868	0.0507738	FOXA2_FOXJ3	ENST00000447947.2|GPR89C|ENSG00000196644.8|G protein-coupled receptor 89C
hg19_v2_chr16_+_48278178_48278336	0.0506116	FOXA2_FOXJ3	ENST00000285737.4|LONP2|ENSG00000102910.9|lon peptidase 2, peroxisomal 	ENST00000535754.1|LONP2|ENSG00000102910.9|lon peptidase 2, peroxisomal
hg19_v2_chr1_-_43855444_43855478	0.05018	FOXA2_FOXJ3	ENST00000372455.4|MED8|ENSG00000159479.12|mediator complex subunit 8
hg19_v2_chr2_+_169757750_169757835	0.0501681	FOXA2_FOXJ3	ENST00000375363.3|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000429379.2|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2 	ENST00000421979.1|G6PC2|ENSG00000152254.6|glucose-6-phosphatase, catalytic, 2
hg19_v2_chr17_-_72772462_72772511	0.0497022	FOXA2_FOXJ3	ENST00000582870.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000581136.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000357814.3|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000579218.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583476.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000580301.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583757.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000582524.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative)
hg19_v2_chr12_+_120740119_120740124	0.0478134	FOXA2_FOXJ3	ENST00000536460.1|SIRT4|ENSG00000089163.4|sirtuin 4 	ENST00000202967.4|SIRT4|ENSG00000089163.4|sirtuin 4
hg19_v2_chr3_-_182703688_182703741	0.0475038	FOXA2_FOXJ3	ENST00000466812.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000487822.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000460412.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1 	ENST00000469954.1|DCUN1D1|ENSG00000043093.9|DCN1, defective in cullin neddylation 1, domain containing 1
hg19_v2_chr5_+_176853702_176853855	0.0470605	FOXA2_FOXJ3	ENST00000507633.1|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000393576.3|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000355958.5|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000528793.1|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6 	ENST00000512684.1|GRK6|ENSG00000198055.6|G protein-coupled receptor kinase 6
hg19_v2_chr13_-_79980315_79980403	0.0462497	FOXA2_FOXJ3	ENST00000438737.2|RBM26|ENSG00000139746.11|RNA binding motif protein 26
hg19_v2_chr2_-_180427304_180427323	0.0462212	FOXA2_FOXJ3	ENST00000336917.5|ZNF385B|ENSG00000144331.14|zinc finger protein 385B
hg19_v2_chr17_-_64216748_64216865	0.0461996	FOXA2_FOXJ3	ENST00000585162.1|APOH|ENSG00000091583.6|apolipoprotein H (beta-2-glycoprotein I)
hg19_v2_chr5_+_159436120_159436176	0.0457621	FOXA2_FOXJ3	ENST00000522793.1|TTC1|ENSG00000113312.6|tetratricopeptide repeat domain 1 	ENST00000231238.5|TTC1|ENSG00000113312.6|tetratricopeptide repeat domain 1
hg19_v2_chr12_-_51718436_51718458	0.0451913	FOXA2_FOXJ3	ENST00000544402.1|BIN2|ENSG00000110934.6|bridging integrator 2
hg19_v2_chr7_-_107443652_107443675	0.0437649	FOXA2_FOXJ3	ENST00000340010.5|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000422236.2|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3 	ENST00000453332.1|SLC26A3|ENSG00000091138.8|solute carrier family 26 (anion exchanger), member 3
hg19_v2_chr17_-_6915646_6915673	0.0433282	FOXA2_FOXJ3	ENST00000574377.1|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000399541.2|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000399540.2|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000575727.1|AC027763.2|ENSG00000215067.5|Uncharacterized protein  	ENST00000573939.1|AC027763.2|ENSG00000215067.5|Uncharacterized protein
hg19_v2_chr18_+_61254570_61254600	0.042437	FOXA2_FOXJ3	ENST00000344731.5|SERPINB13|ENSG00000197641.7|serpin peptidase inhibitor, clade B (ovalbumin), member 13
hg19_v2_chr17_-_29641104_29641130	0.042397	FOXA2_FOXJ3	ENST00000577894.1|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B 	ENST00000330927.4|EVI2B|ENSG00000185862.5|ecotropic viral integration site 2B
hg19_v2_chr3_+_159570722_159570733	0.0421419	FOXA2_FOXJ3	ENST00000482804.1|SCHIP1|ENSG00000151967.14|schwannomin interacting protein 1
hg19_v2_chr11_+_134144139_134144139	0.0420916	FOXA2_FOXJ3	ENST00000389887.5|GLB1L3|ENSG00000166105.11|galactosidase, beta 1-like 3
hg19_v2_chr16_+_24857162_24857302	0.0420039	FOXA2_FOXJ3	ENST00000347898.3|SLC5A11|ENSG00000158865.8|solute carrier family 5 (sodium/inositol cotransporter), member 11
hg19_v2_chr4_-_186456766_186456794	0.0416742	FOXA2_FOXJ3	ENST00000284771.6|PDLIM3|ENSG00000154553.9|PDZ and LIM domain 3
hg19_v2_chr14_+_57046530_57046602	0.0414264	FOXA2_FOXJ3	ENST00000536419.1|TMEM260|ENSG00000070269.9|transmembrane protein 260 	ENST00000538838.1|TMEM260|ENSG00000070269.9|transmembrane protein 260
hg19_v2_chr12_-_122107549_122107572	0.040939	FOXA2_FOXJ3	ENST00000355329.3|MORN3|ENSG00000139714.8|MORN repeat containing 3
hg19_v2_chr3_+_39448180_39448226	0.0398885	FOXA2_FOXJ3	ENST00000301821.6|RPSA|ENSG00000168028.9|ribosomal protein SA 	ENST00000458478.1|RPSA|ENSG00000168028.9|ribosomal protein SA 	ENST00000443003.1|RPSA|ENSG00000168028.9|ribosomal protein SA
hg19_v2_chr1_-_182921119_182921119	0.0397487	FOXA2_FOXJ3	ENST00000423786.1|SHCBP1L|ENSG00000157060.10|SHC SH2-domain binding protein 1-like
hg19_v2_chr3_+_132843652_132843709	0.0397084	FOXA2_FOXJ3	ENST00000508711.1|TMEM108|ENSG00000144868.9|transmembrane protein 108
hg19_v2_chr14_+_102276132_102276178	0.0388172	FOXA2_FOXJ3	ENST00000350249.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557621.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000556946.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr5_+_218356_218453	0.0386334	FOXA2_FOXJ3	ENST00000264932.6|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000504309.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 	ENST00000510361.1|SDHA|ENSG00000073578.12|succinate dehydrogenase complex, subunit A, flavoprotein (Fp)
hg19_v2_chr16_+_5121814_5121855	0.0385373	FOXA2_FOXJ3	ENST00000262374.5|ALG1|ENSG00000033011.7|ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase 	ENST00000586840.1|ALG1|ENSG00000033011.7|ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase
hg19_v2_chr14_-_90798273_90798323	0.0380322	FOXA2_FOXJ3	ENST00000357904.3|NRDE2|ENSG00000119720.13|NRDE-2, necessary for RNA interference, domain containing
hg19_v2_chr3_+_119298523_119298644	0.0379657	FOXA2_FOXJ3	ENST00000357003.3|ADPRH|ENSG00000144843.7|ADP-ribosylarginine hydrolase
hg19_v2_chr10_+_62538089_62538244	0.0375132	FOXA2_FOXJ3	ENST00000519078.2|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1 	ENST00000395284.3|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1 	ENST00000316629.4|CDK1|ENSG00000170312.11|cyclin-dependent kinase 1
hg19_v2_chr17_-_57229155_57229198	0.0367637	FOXA2_FOXJ3	ENST00000584089.1|SKA2|ENSG00000182628.8|spindle and kinetochore associated complex subunit 2
hg19_v2_chr17_+_7942424_7942474	0.0367617	FOXA2_FOXJ3	ENST00000573359.1|ALOX15B|ENSG00000179593.11|arachidonate 15-lipoxygenase, type B
hg19_v2_chr15_-_31283798_31283851	0.036419	FOXA2_FOXJ3	ENST00000435680.1|MTMR10|ENSG00000166912.12|myotubularin related protein 10 	ENST00000425768.1|MTMR10|ENSG00000166912.12|myotubularin related protein 10
hg19_v2_chr1_-_102312517_102312566	0.0361756	FOXA2_FOXJ3	ENST00000338858.5|OLFM3|ENSG00000118733.12|olfactomedin 3
hg19_v2_chr9_-_104198042_104198105	0.0360137	FOXA2_FOXJ3	ENST00000374855.4|ALDOB|ENSG00000136872.13|aldolase B, fructose-bisphosphate
hg19_v2_chr19_+_15160130_15160195	0.0358241	FOXA2_FOXJ3	ENST00000427043.3|CASP14|ENSG00000105141.4|caspase 14, apoptosis-related cysteine peptidase
hg19_v2_chr3_+_108541608_108541624	0.0358149	FOXA2_FOXJ3	ENST00000426646.1|TRAT1|ENSG00000163519.9|T cell receptor associated transmembrane adaptor 1
hg19_v2_chr15_-_81616446_81616466	0.035809	FOXA2_FOXJ3	ENST00000302824.6|STARD5|ENSG00000172345.9|StAR-related lipid transfer (START) domain containing 5
hg19_v2_chr4_+_86748898_86748936	0.0348063	FOXA2_FOXJ3	ENST00000509300.1|ARHGAP24|ENSG00000138639.13|Rho GTPase activating protein 24
hg19_v2_chr2_+_135809835_135809874	0.0346599	FOXA2_FOXJ3	ENST00000264158.8|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000539493.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000442034.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic) 	ENST00000425393.1|RAB3GAP1|ENSG00000115839.13|RAB3 GTPase activating protein subunit 1 (catalytic)
hg19_v2_chr13_-_103346854_103346854	0.0340591	FOXA2_FOXJ3	ENST00000267273.6|METTL21C|ENSG00000139780.7|methyltransferase like 21C
hg19_v2_chr15_-_83224682_83224682	0.0334636	FOXA2_FOXJ3	ENST00000562833.1|RP11-152F13.10|ENSG00000260836.1|RP11-152F13.10
hg19_v2_chr4_-_48014931_48014964	0.0332799	FOXA2_FOXJ3	ENST00000420489.2|CNGA1|ENSG00000198515.9|cyclic nucleotide gated channel alpha 1 	ENST00000504722.1|CNGA1|ENSG00000198515.9|cyclic nucleotide gated channel alpha 1
hg19_v2_chr3_-_108248169_108248169	0.0330465	FOXA2_FOXJ3	ENST00000273353.3|MYH15|ENSG00000144821.5|myosin, heavy chain 15
hg19_v2_chr9_+_131683174_131683282	0.0326947	FOXA2_FOXJ3	ENST00000372592.3|PHYHD1|ENSG00000175287.14|phytanoyl-CoA dioxygenase domain containing 1 	ENST00000428610.1|PHYHD1|ENSG00000175287.14|phytanoyl-CoA dioxygenase domain containing 1
hg19_v2_chr16_-_745946_746025	0.0326076	FOXA2_FOXJ3	ENST00000562563.1|FBXL16|ENSG00000127585.7|F-box and leucine-rich repeat protein 16
hg19_v2_chr22_-_22337154_22337194	0.0322577	FOXA2_FOXJ3	ENST00000413067.2|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta 	ENST00000437929.1|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta 	ENST00000456075.1|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta 	ENST00000434517.1|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta 	ENST00000424393.1|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta 	ENST00000449704.1|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta 	ENST00000437103.1|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta
hg19_v2_chr3_+_108541545_108541569	0.0321803	FOXA2_FOXJ3	ENST00000295756.6|TRAT1|ENSG00000163519.9|T cell receptor associated transmembrane adaptor 1
hg19_v2_chr16_+_31128978_31129002	0.0321714	FOXA2_FOXJ3	ENST00000448516.2|KAT8|ENSG00000103510.15|K(lysine) acetyltransferase 8 	ENST00000219797.4|KAT8|ENSG00000103510.15|K(lysine) acetyltransferase 8
hg19_v2_chr19_-_47157914_47157980	0.0317894	FOXA2_FOXJ3	ENST00000300875.4|DACT3|ENSG00000197380.6|dishevelled-binding antagonist of beta-catenin 3
hg19_v2_chr13_-_61989655_61989655	0.0315581	FOXA2_FOXJ3	ENST00000409204.4|PCDH20|ENSG00000197991.10|protocadherin 20
hg19_v2_chr8_-_93978309_93978331	0.0315307	FOXA2_FOXJ3	ENST00000517858.1|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing 	ENST00000378861.5|TRIQK|ENSG00000205133.7|triple QxxK/R motif containing
hg19_v2_chr8_+_39442097_39442142	0.0315067	FOXA2_FOXJ3	ENST00000265707.5|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18 	ENST00000379866.1|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18 	ENST00000520772.1|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18 	ENST00000541111.1|ADAM18|ENSG00000168619.11|ADAM metallopeptidase domain 18
hg19_v2_chr13_+_98086445_98086493	0.0307906	FOXA2_FOXJ3	ENST00000245304.4|RAP2A|ENSG00000125249.6|RAP2A, member of RAS oncogene family
hg19_v2_chr17_-_30185971_30186093	0.0303814	FOXA2_FOXJ3	ENST00000378634.2|COPRS|ENSG00000172301.6|coordinator of PRMT5, differentiation stimulator
hg19_v2_chr16_-_28857677_28857729	0.0301255	FOXA2_FOXJ3	ENST00000313511.3|TUFM|ENSG00000178952.4|Tu translation elongation factor, mitochondrial
hg19_v2_chr9_+_27109133_27109187	0.0299305	FOXA2_FOXJ3	ENST00000519097.1|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial 	ENST00000380036.4|TEK|ENSG00000120156.16|TEK tyrosine kinase, endothelial
hg19_v2_chr8_+_27631903_27632045	0.0297977	FOXA2_FOXJ3	ENST00000305188.8|ESCO2|ENSG00000171320.10|establishment of sister chromatid cohesion N-acetyltransferase 2
hg19_v2_chr22_-_22337204_22337215	0.0291807	FOXA2_FOXJ3	ENST00000430142.1|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta 	ENST00000357179.5|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta
hg19_v2_chr22_-_22337146_22337153	0.0291694	FOXA2_FOXJ3	ENST00000398793.2|TOP3B|ENSG00000100038.15|topoisomerase (DNA) III beta
hg19_v2_chr8_+_48920960_48921011	0.0288325	FOXA2_FOXJ3	ENST00000523111.2|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000523432.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000521346.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2 	ENST00000517630.1|UBE2V2|ENSG00000169139.7|ubiquitin-conjugating enzyme E2 variant 2
hg19_v2_chr6_+_168399772_168399772	0.0281566	FOXA2_FOXJ3	ENST00000443060.2|KIF25|ENSG00000125337.12|kinesin family member 25
hg19_v2_chr5_+_154092396_154092462	0.0278725	FOXA2_FOXJ3	ENST00000336314.4|LARP1|ENSG00000155506.12|La ribonucleoprotein domain family, member 1
hg19_v2_chr10_-_69597828_69597854	0.0278372	FOXA2_FOXJ3	ENST00000339758.7|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr3_-_154042235_154042290	0.0276882	FOXA2_FOXJ3	ENST00000308361.6|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36 	ENST00000496811.1|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36 	ENST00000544526.1|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36
hg19_v2_chr1_-_231560790_231560790	0.0269938	FOXA2_FOXJ3	ENST00000366641.3|EGLN1|ENSG00000135766.8|egl-9 family hypoxia-inducible factor 1
hg19_v2_chr3_-_154042205_154042229	0.0268486	FOXA2_FOXJ3	ENST00000329463.5|DHX36|ENSG00000174953.9|DEAH (Asp-Glu-Ala-His) box polypeptide 36
hg19_v2_chr5_+_60933634_60933637	0.0267295	FOXA2_FOXJ3	ENST00000505642.1|C5orf64|ENSG00000178722.8|chromosome 5 open reading frame 64
hg19_v2_chr1_+_224370873_224370968	0.0266362	FOXA2_FOXJ3	ENST00000323699.4|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1 	ENST00000391877.3|DEGS1|ENSG00000143753.8|delta(4)-desaturase, sphingolipid 1
hg19_v2_chr13_-_46756351_46756459	0.0265068	FOXA2_FOXJ3	ENST00000323076.2|LCP1|ENSG00000136167.9|lymphocyte cytosolic protein 1 (L-plastin)
hg19_v2_chr10_+_111967345_111967442	0.0264113	FOXA2_FOXJ3	ENST00000332674.5|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein 	ENST00000453116.1|MXI1|ENSG00000119950.16|MAX interactor 1, dimerization protein
hg19_v2_chr20_+_33563206_33563206	0.0262254	FOXA2_FOXJ3	ENST00000262873.7|MYH7B|ENSG00000078814.11|myosin, heavy chain 7B, cardiac muscle, beta
hg19_v2_chr2_-_46844159_46844209	0.0259574	FOXA2_FOXJ3	ENST00000474980.1|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F 	ENST00000306465.4|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr15_+_56657613_56657651	0.0257767	FOXA2_FOXJ3	ENST00000352903.2|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000537232.1|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000561221.2|TEX9|ENSG00000151575.10|testis expressed 9 	ENST00000558083.2|TEX9|ENSG00000151575.10|testis expressed 9
hg19_v2_chr1_-_177939348_177939395	0.0249346	FOXA2_FOXJ3	ENST00000464631.2|SEC16B|ENSG00000120341.14|SEC16 homolog B (S. cerevisiae)
hg19_v2_chr3_+_108855558_108855733	0.0248076	FOXA2_FOXJ3	ENST00000467240.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000477643.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000479039.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1	ENST00000593799.1|RP11-59E19.1|ENSG00000241224.2|RP11-59E19.1
hg19_v2_chr15_-_40600111_40600166	0.0247143	FOXA2_FOXJ3	ENST00000543785.2|PLCB2|ENSG00000137841.7|phospholipase C, beta 2 	ENST00000260402.3|PLCB2|ENSG00000137841.7|phospholipase C, beta 2
hg19_v2_chr7_+_6617039_6617136	0.02456	FOXA2_FOXJ3	ENST00000405731.3|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396713.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396707.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000335965.6|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396709.1|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000483589.1|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4 	ENST00000396706.2|ZDHHC4|ENSG00000136247.10|zinc finger, DHHC-type containing 4
hg19_v2_chrX_+_24167746_24167811	0.024505	FOXA2_FOXJ3	ENST00000428571.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000539115.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr12_+_107078474_107078533	0.0244762	FOXA2_FOXJ3	ENST00000552866.1|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression) 	ENST00000229387.5|RFX4|ENSG00000111783.8|regulatory factor X, 4 (influences HLA class II expression)
hg19_v2_chr3_+_142315225_142315290	0.0243432	FOXA2_FOXJ3	ENST00000457734.2|PLS1|ENSG00000120756.8|plastin 1 	ENST00000483373.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000475296.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000495744.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000476044.1|PLS1|ENSG00000120756.8|plastin 1 	ENST00000461644.1|PLS1|ENSG00000120756.8|plastin 1
hg19_v2_chr20_-_25677465_25677497	0.0240015	FOXA2_FOXJ3	ENST00000252979.5|ZNF337|ENSG00000130684.9|zinc finger protein 337
hg19_v2_chrX_+_24167828_24167907	0.0239047	FOXA2_FOXJ3	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr12_+_56435637_56435745	0.0231058	FOXA2_FOXJ3	ENST00000356464.5|RPS26|ENSG00000197728.5|ribosomal protein S26 	ENST00000552361.1|RPS26|ENSG00000197728.5|ribosomal protein S26
hg19_v2_chr1_+_150488205_150488251	0.022989	FOXA2_FOXJ3	ENST00000416894.1|LINC00568|ENSG00000228126.1|long intergenic non-protein coding RNA 568
hg19_v2_chr2_-_46844242_46844258	0.0228364	FOXA2_FOXJ3	ENST00000281382.6|PIGF|ENSG00000151665.8|phosphatidylinositol glycan anchor biosynthesis, class F
hg19_v2_chr14_+_102276209_102276242	0.0227767	FOXA2_FOXJ3	ENST00000445439.3|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000334743.5|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma 	ENST00000557095.1|PPP2R5C|ENSG00000078304.15|protein phosphatase 2, regulatory subunit B', gamma
hg19_v2_chr4_+_184826418_184826522	0.0227404	FOXA2_FOXJ3	ENST00000308497.4|STOX2|ENSG00000173320.5|storkhead box 2 	ENST00000438269.1|STOX2|ENSG00000173320.5|storkhead box 2
hg19_v2_chr5_+_141346385_141346437	0.0227291	FOXA2_FOXJ3	ENST00000513019.1|RNF14|ENSG00000013561.13|ring finger protein 14 	ENST00000356143.1|RNF14|ENSG00000013561.13|ring finger protein 14
hg19_v2_chr12_-_96390063_96390076	0.0224082	FOXA2_FOXJ3	ENST00000541929.1|HAL|ENSG00000084110.6|histidine ammonia-lyase
hg19_v2_chr7_-_6098770_6098861	0.0220971	FOXA2_FOXJ3	ENST00000536084.1|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1 	ENST00000446699.1|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1 	ENST00000199389.6|EIF2AK1|ENSG00000086232.8|eukaryotic translation initiation factor 2-alpha kinase 1
hg19_v2_chr19_-_12721616_12721640	0.0217935	FOXA2_FOXJ3	ENST00000311437.6|ZNF490|ENSG00000188033.5|zinc finger protein 490
hg19_v2_chr3_-_125655882_125655882	0.0215411	FOXA2_FOXJ3	ENST00000340333.3|ALG1L|ENSG00000189366.5|ALG1, chitobiosyldiphosphodolichol beta-mannosyltransferase-like
hg19_v2_chr5_+_32531893_32531930	0.0211778	FOXA2_FOXJ3	ENST00000512913.1|SUB1|ENSG00000113387.7|SUB1 homolog (S. cerevisiae)
hg19_v2_chr6_+_26217159_26217170	0.0211232	FOXA2_FOXJ3	ENST00000303910.2|HIST1H2AE|ENSG00000168274.3|histone cluster 1, H2ae
hg19_v2_chr19_+_16607122_16607274	0.02109	FOXA2_FOXJ3	ENST00000221671.3|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44 	ENST00000594035.1|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44 	ENST00000599550.1|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44 	ENST00000594813.1|C19orf44|ENSG00000105072.4|chromosome 19 open reading frame 44
hg19_v2_chr16_+_27078219_27078229	0.0203902	FOXA2_FOXJ3	ENST00000418886.1|C16orf82|ENSG00000234186.2|chromosome 16 open reading frame 82
hg19_v2_chr10_+_52724028_52724035	0.0203581	FOXA2_FOXJ3	ENST00000561565.1|RP11-96B5.4|ENSG00000261368.1|RP11-96B5.4
hg19_v2_chr1_-_102462565_102462591	0.020032	FOXA2_FOXJ3	ENST00000370103.4|OLFM3|ENSG00000118733.12|olfactomedin 3
hg19_v2_chr12_+_99038919_99038954	0.0199792	FOXA2_FOXJ3	ENST00000551964.1|APAF1|ENSG00000120868.9|apoptotic peptidase activating factor 1
hg19_v2_chr15_+_64680003_64680063	0.0198191	FOXA2_FOXJ3	ENST00000261884.3|TRIP4|ENSG00000103671.5|thyroid hormone receptor interactor 4
hg19_v2_chr16_-_21663919_21663936	0.0195384	FOXA2_FOXJ3	ENST00000569602.1|IGSF6|ENSG00000140749.7|immunoglobulin superfamily, member 6
hg19_v2_chr4_+_15341442_15341589	0.0193695	FOXA2_FOXJ3	ENST00000397700.2|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7 	ENST00000295297.4|C1QTNF7|ENSG00000163145.8|C1q and tumor necrosis factor related protein 7
hg19_v2_chr10_-_73975657_73975739	0.0193279	FOXA2_FOXJ3	ENST00000394919.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1 	ENST00000526751.1|ASCC1|ENSG00000138303.13|activating signal cointegrator 1 complex subunit 1
hg19_v2_chr1_+_45140360_45140399	0.0192451	FOXA2_FOXJ3	ENST00000418644.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000458657.2|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000441519.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000535358.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228 	ENST00000445071.1|C1orf228|ENSG00000198520.6|chromosome 1 open reading frame 228
hg19_v2_chr9_-_19786926_19786926	0.0187958	FOXA2_FOXJ3	ENST00000341998.2|SLC24A2|ENSG00000155886.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 	ENST00000286344.3|SLC24A2|ENSG00000155886.7|solute carrier family 24 (sodium/potassium/calcium exchanger), member 2
hg19_v2_chr1_-_28559502_28559570	0.0185132	FOXA2_FOXJ3	ENST00000263697.4|DNAJC8|ENSG00000126698.6|DnaJ (Hsp40) homolog, subfamily C, member 8
hg19_v2_chr3_+_48956249_48956330	0.018513	FOXA2_FOXJ3	ENST00000452882.1|ARIH2|ENSG00000177479.15|ariadne RBR E3 ubiquitin protein ligase 2 	ENST00000430423.1|ARIH2|ENSG00000177479.15|ariadne RBR E3 ubiquitin protein ligase 2 	ENST00000356401.4|ARIH2|ENSG00000177479.15|ariadne RBR E3 ubiquitin protein ligase 2 	ENST00000449376.1|ARIH2|ENSG00000177479.15|ariadne RBR E3 ubiquitin protein ligase 2 	ENST00000420814.1|ARIH2|ENSG00000177479.15|ariadne RBR E3 ubiquitin protein ligase 2 	ENST00000449729.1|ARIH2|ENSG00000177479.15|ariadne RBR E3 ubiquitin protein ligase 2 	ENST00000433170.1|ARIH2|ENSG00000177479.15|ariadne RBR E3 ubiquitin protein ligase 2
hg19_v2_chrX_+_40440146_40440268	0.0181753	FOXA2_FOXJ3	ENST00000535539.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000378438.4|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000436783.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000544975.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000535777.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000447485.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2 	ENST00000423649.1|ATP6AP2|ENSG00000182220.9|ATPase, H+ transporting, lysosomal accessory protein 2
hg19_v2_chr12_+_32832203_32832270	0.0179396	FOXA2_FOXJ3	ENST00000553257.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000549701.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000358214.5|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000266481.6|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000551476.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000550154.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000547312.1|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000414834.2|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000381000.4|DNM1L|ENSG00000087470.13|dynamin 1-like 	ENST00000548750.1|DNM1L|ENSG00000087470.13|dynamin 1-like
hg19_v2_chr3_+_157828152_157828222	0.017763	FOXA2_FOXJ3	ENST00000476899.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1
hg19_v2_chr4_-_170679024_170679104	0.01737	FOXA2_FOXJ3	ENST00000393381.2|C4orf27|ENSG00000056050.6|chromosome 4 open reading frame 27
hg19_v2_chr8_+_30300119_30300137	0.0172184	FOXA2_FOXJ3	ENST00000520191.1|RBPMS|ENSG00000157110.11|RNA binding protein with multiple splicing
hg19_v2_chr8_+_26247878_26247981	0.0169428	FOXA2_FOXJ3	ENST00000518611.1|BNIP3L|ENSG00000104765.10|BCL2/adenovirus E1B 19kDa interacting protein 3-like
hg19_v2_chr9_+_80850952_80851267	0.0164454	FOXA2_FOXJ3	ENST00000424347.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000415759.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000376597.4|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000277082.5|CEP78|ENSG00000148019.8|centrosomal protein 78kDa 	ENST00000376598.2|CEP78|ENSG00000148019.8|centrosomal protein 78kDa
hg19_v2_chrX_-_77150985_77151090	0.0163878	FOXA2_FOXJ3	ENST00000358075.6|MAGT1|ENSG00000102158.15|magnesium transporter 1
hg19_v2_chr1_+_158815588_158815691	0.0162845	FOXA2_FOXJ3	ENST00000438394.1|MNDA|ENSG00000163563.7|myeloid cell nuclear differentiation antigen
hg19_v2_chr5_+_70751442_70751456	0.0160609	FOXA2_FOXJ3	ENST00000358731.4|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB 	ENST00000380675.2|BDP1|ENSG00000145734.14|B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
hg19_v2_chrX_-_48693955_48694035	0.0160297	FOXA2_FOXJ3	ENST00000218230.5|PCSK1N|ENSG00000102109.7|proprotein convertase subtilisin/kexin type 1 inhibitor
hg19_v2_chr5_-_110062349_110062380	0.0158462	FOXA2_FOXJ3	ENST00000511883.2|TMEM232|ENSG00000186952.10|transmembrane protein 232 	ENST00000455884.2|TMEM232|ENSG00000186952.10|transmembrane protein 232
hg19_v2_chr11_-_94226964_94227025	0.015128	FOXA2_FOXJ3	ENST00000538923.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000540013.1|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000407439.3|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae) 	ENST00000393241.4|MRE11A|ENSG00000020922.8|MRE11 meiotic recombination 11 homolog A (S. cerevisiae)
hg19_v2_chr11_+_58695174_58695188	0.0149733	FOXA2_FOXJ3	ENST00000317391.4|GLYATL1|ENSG00000166840.9|glycine-N-acyltransferase-like 1
hg19_v2_chr4_-_111119804_111119832	0.0147887	FOXA2_FOXJ3	ENST00000394607.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6 	ENST00000302274.3|ELOVL6|ENSG00000170522.5|ELOVL fatty acid elongase 6
hg19_v2_chr3_-_187009646_187009778	0.0143978	FOXA2_FOXJ3	ENST00000296280.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392470.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000169293.6|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000439271.1|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392472.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor) 	ENST00000392475.2|MASP1|ENSG00000127241.12|mannan-binding lectin serine peptidase 1 (C4/C2 activating component of Ra-reactive factor)
hg19_v2_chr4_+_158142750_158142836	0.0140122	FOXA2_FOXJ3	ENST00000505888.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000449365.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr1_+_203830703_203830743	0.0132844	FOXA2_FOXJ3	ENST00000414487.2|SNRPE|ENSG00000182004.8|small nuclear ribonucleoprotein polypeptide E
hg19_v2_chr14_+_23340822_23341004	0.0122285	FOXA2_FOXJ3	ENST00000359591.4|LRP10|ENSG00000197324.4|low density lipoprotein receptor-related protein 10
hg19_v2_chr3_+_180319918_180320020	0.00951412	FOXA2_FOXJ3	ENST00000296015.4|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14 	ENST00000491380.1|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14 	ENST00000412756.2|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14 	ENST00000382584.4|TTC14|ENSG00000163728.6|tetratricopeptide repeat domain 14
hg19_v2_chr6_-_87804815_87804830	0.00936201	FOXA2_FOXJ3	ENST00000369582.2|CGA|ENSG00000135346.4|glycoprotein hormones, alpha polypeptide
hg19_v2_chr12_-_92539614_92539673	0.00926781	FOXA2_FOXJ3	ENST00000256015.3|BTG1|ENSG00000133639.3|B-cell translocation gene 1, anti-proliferative
hg19_v2_chr2_+_46844290_46844384	0.00886159	FOXA2_FOXJ3	ENST00000238892.3|CRIPT|ENSG00000119878.5|cysteine-rich PDZ-binding protein
hg19_v2_chr4_-_140223670_140223705	0.00824798	FOXA2_FOXJ3	ENST00000394228.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa 	ENST00000539387.1|NDUFC1|ENSG00000109390.7|NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 1, 6kDa
hg19_v2_chr1_+_174670143_174670160	0.00768902	FOXA2_FOXJ3	ENST00000367687.1|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like 	ENST00000347255.2|RABGAP1L|ENSG00000152061.17|RAB GTPase activating protein 1-like
hg19_v2_chr11_+_69924397_69924449	0.00764534	FOXA2_FOXJ3	ENST00000355303.5|ANO1|ENSG00000131620.13|anoctamin 1, calcium activated chloride channel
hg19_v2_chr2_-_220174166_220174370	0.00703962	FOXA2_FOXJ3	ENST00000409251.3|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N 	ENST00000451506.1|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N 	ENST00000295718.2|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N 	ENST00000446182.1|PTPRN|ENSG00000054356.9|protein tyrosine phosphatase, receptor type, N
hg19_v2_chr20_-_44993012_44993085	0.00682079	FOXA2_FOXJ3	ENST00000372229.1|SLC35C2|ENSG00000080189.10|solute carrier family 35 (GDP-fucose transporter), member C2 	ENST00000372230.5|SLC35C2|ENSG00000080189.10|solute carrier family 35 (GDP-fucose transporter), member C2 	ENST00000543605.1|SLC35C2|ENSG00000080189.10|solute carrier family 35 (GDP-fucose transporter), member C2 	ENST00000243896.2|SLC35C2|ENSG00000080189.10|solute carrier family 35 (GDP-fucose transporter), member C2 	ENST00000317734.8|SLC35C2|ENSG00000080189.10|solute carrier family 35 (GDP-fucose transporter), member C2
hg19_v2_chr5_-_146833222_146833261	0.00606482	FOXA2_FOXJ3	ENST00000534907.1|DPYSL3|ENSG00000113657.8|dihydropyrimidinase-like 3
hg19_v2_chr1_-_16400086_16400153	0.0056304	FOXA2_FOXJ3	ENST00000375662.4|FAM131C|ENSG00000185519.8|family with sequence similarity 131, member C
hg19_v2_chr12_-_50790267_50790405	0.00560855	FOXA2_FOXJ3	ENST00000327337.5|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A 	ENST00000543111.1|FAM186A|ENSG00000185958.5|family with sequence similarity 186, member A
hg19_v2_chr16_-_67597789_67597861	0.00545632	FOXA2_FOXJ3	ENST00000605277.1|CTD-2012K14.6|ENSG00000261386.2|CTD-2012K14.6
hg19_v2_chr4_-_100212132_100212185	0.00472867	FOXA2_FOXJ3	ENST00000209668.2|ADH1A|ENSG00000187758.3|alcohol dehydrogenase 1A (class I), alpha polypeptide
hg19_v2_chr11_+_67374323_67374437	0.00438031	FOXA2_FOXJ3	ENST00000322776.6|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000532303.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000532244.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000528328.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000529927.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000532343.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000415352.2|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000533075.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000529867.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa 	ENST00000530638.1|NDUFV1|ENSG00000167792.7|NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa
hg19_v2_chr11_+_62186498_62186515	0.00425414	FOXA2_FOXJ3	ENST00000278282.2|SCGB1A1|ENSG00000149021.2|secretoglobin, family 1A, member 1 (uteroglobin)
hg19_v2_chr2_-_161056802_161056815	0.00398384	FOXA2_FOXJ3	ENST00000283249.2|ITGB6|ENSG00000115221.6|integrin, beta 6 	ENST00000409872.1|ITGB6|ENSG00000115221.6|integrin, beta 6
hg19_v2_chr14_-_90798418_90798481	0.00378058	FOXA2_FOXJ3	ENST00000354366.3|NRDE2|ENSG00000119720.13|NRDE-2, necessary for RNA interference, domain containing
hg19_v2_chr18_-_48351743_48351772	0.00362138	FOXA2_FOXJ3	ENST00000588444.1|MRO|ENSG00000134042.8|maestro 	ENST00000256425.2|MRO|ENSG00000134042.8|maestro 	ENST00000428869.2|MRO|ENSG00000134042.8|maestro
hg19_v2_chr15_+_35270552_35270552	0.00301634	FOXA2_FOXJ3	ENST00000391457.2|AC114546.1|ENSG00000212768.2|HCG37415; PRO1914; Uncharacterized protein
hg19_v2_chr2_+_98962618_98962651	0.00295369	FOXA2_FOXJ3	ENST00000393504.1|CNGA3|ENSG00000144191.7|cyclic nucleotide gated channel alpha 3 	ENST00000436404.2|CNGA3|ENSG00000144191.7|cyclic nucleotide gated channel alpha 3
hg19_v2_chr2_-_201729393_201729428	0.00275444	FOXA2_FOXJ3	ENST00000321356.4|CLK1|ENSG00000013441.11|CDC-like kinase 1
hg19_v2_chr7_-_76829125_76829143	0.00249934	FOXA2_FOXJ3	ENST00000248598.5|FGL2|ENSG00000127951.5|fibrinogen-like 2
hg19_v2_chr12_-_96390108_96390143	0.00234298	FOXA2_FOXJ3	ENST00000538703.1|HAL|ENSG00000084110.6|histidine ammonia-lyase 	ENST00000261208.3|HAL|ENSG00000084110.6|histidine ammonia-lyase
hg19_v2_chr10_-_69597915_69597926	0.00222782	FOXA2_FOXJ3	ENST00000225171.2|DNAJC12|ENSG00000108176.10|DnaJ (Hsp40) homolog, subfamily C, member 12
hg19_v2_chr8_+_87878640_87878673	0.00213708	FOXA2_FOXJ3	ENST00000518476.1|CNBD1|ENSG00000176571.7|cyclic nucleotide binding domain containing 1
hg19_v2_chrX_-_65259914_65259967	0.000334513	FOXA2_FOXJ3	ENST00000374737.4|VSIG4|ENSG00000155659.10|V-set and immunoglobulin domain containing 4 	ENST00000455586.2|VSIG4|ENSG00000155659.10|V-set and immunoglobulin domain containing 4
hg19_v2_chr2_+_27665232_27665286	1.21376e-05	FOXA2_FOXJ3	ENST00000543753.1|KRTCAP3|ENSG00000157992.8|keratinocyte associated protein 3 	ENST00000288873.3|KRTCAP3|ENSG00000157992.8|keratinocyte associated protein 3
