hg19_v2_chr1_-_150208320_150208338	0.923141	LHX3	ENST00000534220.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr3_-_141747950_141748004	0.67711	LHX3	ENST00000497579.1|TFDP2|ENSG00000114126.13|transcription factor Dp-2 (E2F dimerization partner 2)
hg19_v2_chr17_-_39623681_39623681	0.475583	LHX3	ENST00000225899.3|KRT32|ENSG00000108759.3|keratin 32
hg19_v2_chr17_-_39093672_39093738	0.473604	LHX3	ENST00000209718.3|KRT23|ENSG00000108244.12|keratin 23 (histone deacetylase inducible) 	ENST00000436344.3|KRT23|ENSG00000108244.12|keratin 23 (histone deacetylase inducible) 	ENST00000485751.1|KRT23|ENSG00000108244.12|keratin 23 (histone deacetylase inducible)
hg19_v2_chr17_+_1674982_1675041	0.460288	LHX3	ENST00000572048.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1 	ENST00000573763.1|SERPINF1|ENSG00000132386.6|serpin peptidase inhibitor, clade F (alpha-2 antiplasmin, pigment epithelium derived factor), member 1
hg19_v2_chr5_-_1882858_1883003	0.431231	LHX3	ENST00000511126.1|IRX4|ENSG00000113430.5|iroquois homeobox 4 	ENST00000231357.2|IRX4|ENSG00000113430.5|iroquois homeobox 4
hg19_v2_chr6_+_123317116_123317260	0.400612	LHX3	ENST00000275162.5|CLVS2|ENSG00000146352.8|clavesin 2
hg19_v2_chr1_-_150208291_150208309	0.35118	LHX3	ENST00000533654.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr3_-_191000172_191000209	0.325451	LHX3	ENST00000427544.2|UTS2B|ENSG00000188958.5|urotensin 2B
hg19_v2_chr4_+_155484155_155484178	0.287856	LHX3	ENST00000509493.1|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr15_-_99057551_99057611	0.282451	LHX3	ENST00000558256.1|FAM169B|ENSG00000185087.7|family with sequence similarity 169, member B
hg19_v2_chr13_-_84456527_84456541	0.277644	LHX3	ENST00000377084.2|SLITRK1|ENSG00000178235.6|SLIT and NTRK-like family, member 1
hg19_v2_chr4_-_120243545_120243562	0.252503	LHX3	ENST00000274024.3|FABP2|ENSG00000145384.3|fatty acid binding protein 2, intestinal
hg19_v2_chr1_-_182641037_182641068	0.244737	LHX3	ENST00000483095.2|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chr1_-_182640988_182641033	0.240318	LHX3	ENST00000367556.1|RGS8|ENSG00000135824.8|regulator of G-protein signaling 8
hg19_v2_chrX_-_110655306_110655330	0.240203	LHX3	ENST00000371993.2|DCX|ENSG00000077279.12|doublecortin
hg19_v2_chr14_+_29241910_29242013	0.227865	LHX3	ENST00000399387.4|C14orf23|ENSG00000186960.6|chromosome 14 open reading frame 23 	ENST00000552957.1|C14orf23|ENSG00000186960.6|chromosome 14 open reading frame 23 	ENST00000548213.1|C14orf23|ENSG00000186960.6|chromosome 14 open reading frame 23
hg19_v2_chr14_-_21566731_21566836	0.225348	LHX3	ENST00000360947.3|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr19_-_51920952_51921057	0.219655	LHX3	ENST00000356298.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000339313.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000529627.1|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000439889.2|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000353836.5|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10 	ENST00000432469.2|SIGLEC10|ENSG00000142512.10|sialic acid binding Ig-like lectin 10
hg19_v2_chr10_-_90611566_90611608	0.210544	LHX3	ENST00000371930.4|ANKRD22|ENSG00000152766.5|ankyrin repeat domain 22
hg19_v2_chr17_-_4938712_4938733	0.208469	LHX3	ENST00000254853.5|SLC52A1|ENSG00000132517.10|solute carrier family 52 (riboflavin transporter), member 1 	ENST00000424747.1|SLC52A1|ENSG00000132517.10|solute carrier family 52 (riboflavin transporter), member 1
hg19_v2_chr15_+_64680003_64680063	0.201943	LHX3	ENST00000261884.3|TRIP4|ENSG00000103671.5|thyroid hormone receptor interactor 4
hg19_v2_chr3_+_148415571_148415705	0.201473	LHX3	ENST00000497524.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000349243.3|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000542281.1|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000418473.2|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1 	ENST00000404754.2|AGTR1|ENSG00000144891.13|angiotensin II receptor, type 1
hg19_v2_chr5_-_16916624_16916641	0.199687	LHX3	ENST00000513882.1|MYO10|ENSG00000145555.10|myosin X
hg19_v2_chr18_+_616711_616720	0.197731	LHX3	ENST00000579494.1|CLUL1|ENSG00000079101.12|clusterin-like 1 (retinal)
hg19_v2_chr6_-_9933500_9933500	0.186758	LHX3	ENST00000492169.1|OFCC1|ENSG00000181355.16|orofacial cleft 1 candidate 1
hg19_v2_chr17_-_10372875_10372876	0.186738	LHX3	ENST00000255381.2|MYH4|ENSG00000264424.1|myosin, heavy chain 4, skeletal muscle
hg19_v2_chr14_-_101295407_101295537	0.184863	LHX3	ENST00000596284.1|AL117190.2|ENSG00000267918.1|AL117190.2
hg19_v2_chr18_+_616672_616681	0.181091	LHX3	ENST00000338387.7|CLUL1|ENSG00000079101.12|clusterin-like 1 (retinal)
hg19_v2_chr1_-_150208363_150208386	0.180253	LHX3	ENST00000436748.2|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr1_-_92952433_92952489	0.177471	LHX3	ENST00000294702.5|GFI1|ENSG00000162676.7|growth factor independent 1 transcription repressor
hg19_v2_chr4_+_155484103_155484147	0.177287	LHX3	ENST00000302068.4|FGB|ENSG00000171564.7|fibrinogen beta chain
hg19_v2_chr8_+_92261516_92261555	0.170557	LHX3	ENST00000276609.3|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7 	ENST00000309536.2|SLC26A7|ENSG00000147606.4|solute carrier family 26 (anion exchanger), member 7
hg19_v2_chr6_+_114178512_114178586	0.167887	LHX3	ENST00000368635.4|MARCKS|ENSG00000155130.5|myristoylated alanine-rich protein kinase C substrate
hg19_v2_chr11_-_67981046_67981159	0.167281	LHX3	ENST00000402789.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000402185.2|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000458496.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr12_+_59989918_59989965	0.160549	LHX3	ENST00000547379.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7 	ENST00000549465.1|SLC16A7|ENSG00000118596.7|solute carrier family 16 (monocarboxylate transporter), member 7
hg19_v2_chrX_+_9431324_9431371	0.160466	LHX3	ENST00000407597.2|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000424279.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000536365.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000441088.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000380961.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked 	ENST00000415293.1|TBL1X|ENSG00000101849.11|transducin (beta)-like 1X-linked
hg19_v2_chr8_+_11961898_11961898	0.156755	LHX3	ENST00000400085.3|ZNF705D|ENSG00000215343.3|zinc finger protein 705D
hg19_v2_chr5_+_55149150_55149200	0.155918	LHX3	ENST00000297015.3|IL31RA|ENSG00000164509.9|interleukin 31 receptor A
hg19_v2_chr7_-_4901625_4901633	0.152511	LHX3	ENST00000404991.1|PAPOLB|ENSG00000218823.1|poly(A) polymerase beta (testis specific)
hg19_v2_chr7_-_105332084_105332111	0.151757	LHX3	ENST00000472195.1|ATXN7L1|ENSG00000146776.10|ataxin 7-like 1
hg19_v2_chrX_-_39186610_39186621	0.14536	LHX3	ENST00000429281.1|RP11-265P11.2|ENSG00000235304.1|RP11-265P11.2	ENST00000448597.1|RP11-265P11.2|ENSG00000235304.1|RP11-265P11.2
hg19_v2_chr2_-_145278475_145278621	0.143066	LHX3	ENST00000558170.2|ZEB2|ENSG00000169554.12|zinc finger E-box binding homeobox 2
hg19_v2_chr2_+_54785485_54785538	0.141282	LHX3	ENST00000333896.5|SPTBN1|ENSG00000115306.11|spectrin, beta, non-erythrocytic 1
hg19_v2_chr10_-_27529486_27529497	0.140829	LHX3	ENST00000375888.1|ACBD5|ENSG00000107897.14|acyl-CoA binding domain containing 5
hg19_v2_chr1_-_20250110_20250110	0.137596	LHX3	ENST00000375116.3|PLA2G2E|ENSG00000188784.4|phospholipase A2, group IIE
hg19_v2_chr4_+_169552748_169552774	0.136594	LHX3	ENST00000504519.1|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein 	ENST00000512127.1|PALLD|ENSG00000129116.13|palladin, cytoskeletal associated protein
hg19_v2_chr20_+_11008408_11008408	0.135074	LHX3	ENST00000378252.1|C20orf187|ENSG00000125899.6|chromosome 20 open reading frame 187
hg19_v2_chr9_+_125132803_125132835	0.130277	LHX3	ENST00000540753.1|PTGS1|ENSG00000095303.10|prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)
hg19_v2_chr9_-_128246769_128246780	0.128974	LHX3	ENST00000444226.1|MAPKAP1|ENSG00000119487.12|mitogen-activated protein kinase associated protein 1
hg19_v2_chr3_+_68055366_68055385	0.127739	LHX3	ENST00000496687.1|FAM19A1|ENSG00000183662.6|family with sequence similarity 19 (chemokine (C-C motif)-like), member A1
hg19_v2_chr14_+_22465771_22465783	0.125517	LHX3	ENST00000390445.2|TRAV17|ENSG00000211797.2|T cell receptor alpha variable 17
hg19_v2_chr3_+_63953415_63953430	0.123989	LHX3	ENST00000484332.1|ATXN7|ENSG00000163635.13|ataxin 7
hg19_v2_chr3_-_48130707_48130789	0.123742	LHX3	ENST00000360240.6|MAP4|ENSG00000047849.17|microtubule-associated protein 4 	ENST00000383737.4|MAP4|ENSG00000047849.17|microtubule-associated protein 4
hg19_v2_chr2_-_14541060_14541087	0.123645	LHX3	ENST00000418420.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276 	ENST00000417751.1|LINC00276|ENSG00000230448.1|long intergenic non-protein coding RNA 276
hg19_v2_chr1_-_150208412_150208467	0.120804	LHX3	ENST00000532744.1|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369114.5|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369115.2|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E 	ENST00000369116.4|ANP32E|ENSG00000143401.10|acidic (leucine-rich) nuclear phosphoprotein 32 family, member E
hg19_v2_chr8_-_110986918_110986959	0.120177	LHX3	ENST00000297404.1|KCNV1|ENSG00000164794.4|potassium channel, subfamily V, member 1
hg19_v2_chr19_+_49199209_49199284	0.119831	LHX3	ENST00000522966.1|FUT2|ENSG00000176920.10|fucosyltransferase 2 (secretor status included) 	ENST00000425340.2|FUT2|ENSG00000176920.10|fucosyltransferase 2 (secretor status included) 	ENST00000391876.4|FUT2|ENSG00000176920.10|fucosyltransferase 2 (secretor status included)
hg19_v2_chr6_-_49712123_49712134	0.117199	LHX3	ENST00000263045.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr6_-_49712147_49712158	0.117159	LHX3	ENST00000433368.2|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3 	ENST00000354620.4|CRISP3|ENSG00000096006.7|cysteine-rich secretory protein 3
hg19_v2_chr4_+_113568207_113568367	0.116821	LHX3	ENST00000511529.1|LARP7|ENSG00000174720.11|La ribonucleoprotein domain family, member 7
hg19_v2_chr8_-_104153559_104153575	0.116166	LHX3	ENST00000436771.1|C8orf56|ENSG00000236939.2|chromosome 8 open reading frame 56
hg19_v2_chr9_-_100000957_100001043	0.115769	LHX3	ENST00000366109.2|RP11-498P14.5|ENSG00000203279.3|RP11-498P14.5	ENST00000607322.1|RP11-498P14.5|ENSG00000203279.3|RP11-498P14.5
hg19_v2_chr17_+_68071389_68071426	0.113853	LHX3	ENST00000283936.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16 	ENST00000392671.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr8_-_104153703_104153716	0.113371	LHX3	ENST00000521246.1|C8orf56|ENSG00000236939.2|chromosome 8 open reading frame 56
hg19_v2_chr17_+_68071458_68071481	0.113136	LHX3	ENST00000589377.1|KCNJ16|ENSG00000153822.9|potassium inwardly-rectifying channel, subfamily J, member 16
hg19_v2_chr5_+_140529630_140529683	0.112674	LHX3	ENST00000543635.1|PCDHB6|ENSG00000113211.3|protocadherin beta 6
hg19_v2_chr6_+_83072923_83072978	0.112617	LHX3	ENST00000535040.1|TPBG|ENSG00000146242.5|trophoblast glycoprotein
hg19_v2_chr4_-_41884620_41884663	0.110312	LHX3	ENST00000504870.1|LINC00682|ENSG00000245870.2|long intergenic non-protein coding RNA 682
hg19_v2_chr2_+_185463093_185463181	0.109827	LHX3	ENST00000302277.6|ZNF804A|ENSG00000170396.6|zinc finger protein 804A
hg19_v2_chr16_+_89334512_89334512	0.109279	LHX3	ENST00000602042.1|AC137932.1|ENSG00000268218.1|AC137932.1
hg19_v2_chr3_-_20053741_20053822	0.108356	LHX3	ENST00000389050.4|PP2D1|ENSG00000183977.9|protein phosphatase 2C-like domain containing 1
hg19_v2_chr14_-_21567009_21567173	0.10791	LHX3	ENST00000556174.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000554478.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000553980.1|ZNF219|ENSG00000165804.11|zinc finger protein 219 	ENST00000421093.2|ZNF219|ENSG00000165804.11|zinc finger protein 219
hg19_v2_chr3_+_2933893_2933921	0.107813	LHX3	ENST00000397459.2|CNTN4|ENSG00000144619.10|contactin 4
hg19_v2_chr1_+_244214577_244214593	0.105616	LHX3	ENST00000358704.4|ZBTB18|ENSG00000179456.9|zinc finger and BTB domain containing 18
hg19_v2_chr5_+_67586465_67586534	0.105126	LHX3	ENST00000336483.5|PIK3R1|ENSG00000145675.10|phosphoinositide-3-kinase, regulatory subunit 1 (alpha)
hg19_v2_chr6_-_66417107_66417125	0.102188	LHX3	ENST00000370621.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000370618.3|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000503581.1|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila) 	ENST00000393380.2|EYS|ENSG00000188107.9|eyes shut homolog (Drosophila)
hg19_v2_chr10_-_128359074_128359083	0.101614	LHX3	ENST00000544758.1|C10orf90|ENSG00000154493.13|chromosome 10 open reading frame 90
hg19_v2_chr2_+_26624775_26624809	0.0972379	LHX3	ENST00000288710.2|DRC1|ENSG00000157856.6|dynein regulatory complex subunit 1 homolog (Chlamydomonas)
hg19_v2_chr9_-_21482312_21482312	0.0970561	LHX3	ENST00000448696.3|IFNE|ENSG00000184995.6|interferon, epsilon
hg19_v2_chr10_+_696000_696035	0.0951682	LHX3	ENST00000381489.5|PRR26|ENSG00000180525.9|proline rich 26
hg19_v2_chr20_-_29978286_29978310	0.0949673	LHX3	ENST00000376315.2|DEFB119|ENSG00000180483.6|defensin, beta 119
hg19_v2_chr2_-_231860596_231860757	0.0925766	LHX3	ENST00000441063.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000434094.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000418330.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000457803.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000414876.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000446741.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head) 	ENST00000426904.1|AC105344.2|ENSG00000238062.1|SPATA3 antisense RNA 1 (head to head)
hg19_v2_chr5_-_59783882_59783910	0.0910808	LHX3	ENST00000505507.2|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific 	ENST00000502484.2|PDE4D|ENSG00000113448.12|phosphodiesterase 4D, cAMP-specific
hg19_v2_chr17_-_72772462_72772511	0.0905586	LHX3	ENST00000582870.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000581136.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000357814.3|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000579218.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583476.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000580301.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000583757.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative) 	ENST00000582524.1|NAT9|ENSG00000109065.7|N-acetyltransferase 9 (GCN5-related, putative)
hg19_v2_chr3_+_132843652_132843709	0.0890881	LHX3	ENST00000508711.1|TMEM108|ENSG00000144868.9|transmembrane protein 108
hg19_v2_chr3_+_138340067_138340080	0.0882197	LHX3	ENST00000479848.1|FAIM|ENSG00000158234.8|Fas apoptotic inhibitory molecule
hg19_v2_chr4_-_23891693_23891706	0.0873684	LHX3	ENST00000264867.2|PPARGC1A|ENSG00000109819.4|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v2_chr9_-_116065551_116065551	0.0871825	LHX3	ENST00000297894.5|RNF183|ENSG00000165188.9|ring finger protein 183
hg19_v2_chr17_-_64225508_64225539	0.0870538	LHX3	ENST00000205948.6|APOH|ENSG00000091583.6|apolipoprotein H (beta-2-glycoprotein I)
hg19_v2_chr3_+_138340049_138340056	0.0852583	LHX3	ENST00000464668.1|FAIM|ENSG00000158234.8|Fas apoptotic inhibitory molecule
hg19_v2_chr11_-_128894053_128894123	0.0797674	LHX3	ENST00000392657.3|ARHGAP32|ENSG00000134909.14|Rho GTPase activating protein 32
hg19_v2_chr3_+_101443476_101443515	0.0788027	LHX3	ENST00000327230.4|CEP97|ENSG00000182504.6|centrosomal protein 97kDa 	ENST00000494050.1|CEP97|ENSG00000182504.6|centrosomal protein 97kDa
hg19_v2_chr6_+_72926145_72926245	0.078289	LHX3	ENST00000425662.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1 	ENST00000453976.2|RIMS1|ENSG00000079841.14|regulating synaptic membrane exocytosis 1
hg19_v2_chr11_-_67980744_67980882	0.0781725	LHX3	ENST00000401547.2|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000453170.1|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila) 	ENST00000304363.4|SUV420H1|ENSG00000110066.10|suppressor of variegation 4-20 homolog 1 (Drosophila)
hg19_v2_chr1_+_15668240_15668263	0.0755063	LHX3	ENST00000444385.1|FHAD1|ENSG00000142621.15|forkhead-associated (FHA) phosphopeptide binding domain 1
hg19_v2_chr16_-_28634874_28634907	0.0752643	LHX3	ENST00000395609.1|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1 	ENST00000350842.4|SULT1A1|ENSG00000196502.7|sulfotransferase family, cytosolic, 1A, phenol-preferring, member 1
hg19_v2_chr12_-_86650077_86650095	0.0748414	LHX3	ENST00000552808.2|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative) 	ENST00000547225.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr12_+_8309630_8309742	0.0746579	LHX3	ENST00000396570.3|ZNF705A|ENSG00000196946.5|zinc finger protein 705A
hg19_v2_chr7_-_140482926_140482957	0.0745572	LHX3	ENST00000496384.2|BRAF|ENSG00000157764.8|v-raf murine sarcoma viral oncogene homolog B
hg19_v2_chr8_-_25281747_25281779	0.0733087	LHX3	ENST00000421054.2|GNRH1|ENSG00000147437.5|gonadotropin-releasing hormone 1 (luteinizing-releasing hormone)
hg19_v2_chr15_-_81195510_81195510	0.0716782	LHX3	ENST00000561295.1|RP11-351M8.1|ENSG00000259649.1|Uncharacterized protein
hg19_v2_chr2_-_228582709_228582754	0.0709568	LHX3	ENST00000541617.1|SLC19A3|ENSG00000135917.9|solute carrier family 19 (thiamine transporter), member 3 	ENST00000409456.2|SLC19A3|ENSG00000135917.9|solute carrier family 19 (thiamine transporter), member 3 	ENST00000409287.1|SLC19A3|ENSG00000135917.9|solute carrier family 19 (thiamine transporter), member 3 	ENST00000258403.3|SLC19A3|ENSG00000135917.9|solute carrier family 19 (thiamine transporter), member 3
hg19_v2_chr19_+_11457175_11457224	0.0685687	LHX3	ENST00000458408.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000586451.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159 	ENST00000588592.1|CCDC159|ENSG00000183401.7|coiled-coil domain containing 159
hg19_v2_chr5_+_147691979_147691997	0.0682108	LHX3	ENST00000274565.4|SPINK7|ENSG00000145879.6|serine peptidase inhibitor, Kazal type 7 (putative)
hg19_v2_chr12_-_42631529_42631602	0.0659631	LHX3	ENST00000548917.1|YAF2|ENSG00000015153.10|YY1 associated factor 2
hg19_v2_chr16_+_72459838_72459857	0.0652568	LHX3	ENST00000564508.1|AC004158.3|ENSG00000260664.1|AC004158.3
hg19_v2_chr19_-_11457162_11457194	0.0637941	LHX3	ENST00000590482.1|TMEM205|ENSG00000105518.9|transmembrane protein 205
hg19_v2_chr5_-_39274617_39274636	0.0621904	LHX3	ENST00000510188.1|FYB|ENSG00000082074.11|FYN binding protein
hg19_v2_chr1_-_231005310_231005347	0.061554	LHX3	ENST00000470540.1|C1orf198|ENSG00000119280.12|chromosome 1 open reading frame 198
hg19_v2_chr5_-_78809950_78810040	0.0602625	LHX3	ENST00000334082.6|HOMER1|ENSG00000152413.10|homer homolog 1 (Drosophila)
hg19_v2_chr12_-_86650045_86650076	0.0595331	LHX3	ENST00000604798.1|MGAT4C|ENSG00000182050.9|mannosyl (alpha-1,3-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme C (putative)
hg19_v2_chr11_+_27015628_27015646	0.0574971	LHX3	ENST00000318627.2|FIBIN|ENSG00000176971.2|fin bud initiation factor homolog (zebrafish)
hg19_v2_chr2_-_99871570_99871745	0.0567007	LHX3	ENST00000333017.2|LYG2|ENSG00000185674.5|lysozyme G-like 2 	ENST00000409679.1|LYG2|ENSG00000185674.5|lysozyme G-like 2 	ENST00000423306.1|LYG2|ENSG00000185674.5|lysozyme G-like 2
hg19_v2_chr7_-_36764142_36764157	0.0556716	LHX3	ENST00000258749.5|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil) 	ENST00000535891.1|AOAH|ENSG00000136250.7|acyloxyacyl hydrolase (neutrophil)
hg19_v2_chr4_+_158141843_158141895	0.0549072	LHX3	ENST00000509417.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000296526.7|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr3_-_167191814_167191842	0.0543795	LHX3	ENST00000466903.1|SERPINI2|ENSG00000114204.10|serpin peptidase inhibitor, clade I (pancpin), member 2 	ENST00000264677.4|SERPINI2|ENSG00000114204.10|serpin peptidase inhibitor, clade I (pancpin), member 2
hg19_v2_chr6_-_2634820_2634844	0.0539927	LHX3	ENST00000296847.3|C6orf195|ENSG00000164385.5|chromosome 6 open reading frame 195
hg19_v2_chr18_+_28956740_28956846	0.0531152	LHX3	ENST00000308128.4|DSG4|ENSG00000175065.7|desmoglein 4 	ENST00000359747.4|DSG4|ENSG00000175065.7|desmoglein 4
hg19_v2_chr20_+_5987890_5987904	0.0511514	LHX3	ENST00000378868.4|CRLS1|ENSG00000088766.7|cardiolipin synthase 1
hg19_v2_chr4_+_41937131_41937211	0.0493707	LHX3	ENST00000504986.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000508448.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000513702.1|TMEM33|ENSG00000109133.8|transmembrane protein 33 	ENST00000325094.5|TMEM33|ENSG00000109133.8|transmembrane protein 33
hg19_v2_chr11_+_59824127_59824161	0.0438422	LHX3	ENST00000278865.3|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr8_+_105352050_105352056	0.0429572	LHX3	ENST00000297581.2|DCSTAMP|ENSG00000164935.2|dendrocyte expressed seven transmembrane protein
hg19_v2_chrX_-_55057403_55057497	0.0410005	LHX3	ENST00000396198.3|ALAS2|ENSG00000158578.14|aminolevulinate, delta-, synthase 2 	ENST00000335854.4|ALAS2|ENSG00000158578.14|aminolevulinate, delta-, synthase 2 	ENST00000455688.1|ALAS2|ENSG00000158578.14|aminolevulinate, delta-, synthase 2 	ENST00000330807.5|ALAS2|ENSG00000158578.14|aminolevulinate, delta-, synthase 2
hg19_v2_chr16_+_15489603_15489627	0.0399601	LHX3	ENST00000568766.1|RP11-1021N1.1|ENSG00000261130.1|Uncharacterized protein  	ENST00000287594.7|MPV17L|ENSG00000156968.8|MPV17 mitochondrial membrane protein-like
hg19_v2_chr2_+_234826016_234826050	0.0387125	LHX3	ENST00000324695.4|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8 	ENST00000433712.2|TRPM8|ENSG00000144481.12|transient receptor potential cation channel, subfamily M, member 8
hg19_v2_chr7_+_97361388_97361405	0.0379302	LHX3	ENST00000350485.4|TAC1|ENSG00000006128.7|tachykinin, precursor 1 	ENST00000346867.4|TAC1|ENSG00000006128.7|tachykinin, precursor 1
hg19_v2_chr11_+_59824060_59824106	0.0375702	LHX3	ENST00000395032.2|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific) 	ENST00000358152.2|MS4A3|ENSG00000149516.9|membrane-spanning 4-domains, subfamily A, member 3 (hematopoietic cell-specific)
hg19_v2_chr5_+_81601166_81601166	0.035851	LHX3	ENST00000439350.1|ATP6AP1L|ENSG00000205464.7|ATPase, H+ transporting, lysosomal accessory protein 1-like
hg19_v2_chr4_+_158142750_158142836	0.0348625	LHX3	ENST00000505888.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2 	ENST00000449365.1|GRIA2|ENSG00000120251.14|glutamate receptor, ionotropic, AMPA 2
hg19_v2_chr13_-_70682590_70682601	0.0343812	LHX3	ENST00000377844.4|KLHL1|ENSG00000150361.7|kelch-like family member 1
hg19_v2_chr4_-_23891658_23891690	0.032552	LHX3	ENST00000507380.1|PPARGC1A|ENSG00000109819.4|peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
hg19_v2_chr7_-_25268104_25268106	0.0321227	LHX3	ENST00000222674.2|NPVF|ENSG00000105954.2|neuropeptide VF precursor
hg19_v2_chr8_-_57123815_57123867	0.0313663	LHX3	ENST00000316981.3|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000423799.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1 	ENST00000429357.2|PLAG1|ENSG00000181690.3|pleiomorphic adenoma gene 1
hg19_v2_chr7_+_39017504_39017598	0.0313327	LHX3	ENST00000403058.1|POU6F2|ENSG00000106536.15|POU class 6 homeobox 2
hg19_v2_chr22_+_23487513_23487707	0.0309979	LHX3	ENST00000263116.2|RAB36|ENSG00000100228.8|RAB36, member RAS oncogene family 	ENST00000341989.4|RAB36|ENSG00000100228.8|RAB36, member RAS oncogene family
hg19_v2_chr19_+_48949030_48949086	0.0305791	LHX3	ENST00000253237.5|GRWD1|ENSG00000105447.8|glutamate-rich WD repeat containing 1
hg19_v2_chr20_-_29978383_29978406	0.0303679	LHX3	ENST00000339144.3|DEFB119|ENSG00000180483.6|defensin, beta 119 	ENST00000376321.3|DEFB119|ENSG00000180483.6|defensin, beta 119
hg19_v2_chr22_+_17956618_17956637	0.0288088	LHX3	ENST00000262608.8|CECR2|ENSG00000099954.14|cat eye syndrome chromosome region, candidate 2
hg19_v2_chr12_-_10282681_10282741	0.0256388	LHX3	ENST00000533022.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chr4_+_158493642_158493770	0.024111	LHX3	ENST00000507108.1|RP11-364P22.1|ENSG00000234111.2|RP11-364P22.1	ENST00000455598.1|RP11-364P22.1|ENSG00000234111.2|RP11-364P22.1	ENST00000509450.1|RP11-364P22.1|ENSG00000234111.2|RP11-364P22.1
hg19_v2_chr17_-_8263538_8263538	0.0233719	LHX3	ENST00000535173.1|AC135178.1|ENSG00000198150.2|HCG1985372; Uncharacterized protein; cDNA FLJ37541 fis, clone BRCAN2026340
hg19_v2_chrX_-_13835147_13835224	0.0217364	LHX3	ENST00000493677.1|GPM6B|ENSG00000046653.10|glycoprotein M6B 	ENST00000355135.2|GPM6B|ENSG00000046653.10|glycoprotein M6B
hg19_v2_chr14_-_45252031_45252036	0.0216931	LHX3	ENST00000556405.1|RP11-398E10.1|ENSG00000258998.1|RP11-398E10.1
hg19_v2_chr12_-_11287243_11287243	0.0208239	LHX3	ENST00000539585.1|TAS2R30|ENSG00000256188.1|taste receptor, type 2, member 30
hg19_v2_chr4_+_95128748_95128794	0.0196598	LHX3	ENST00000359052.4|SMARCAD1|ENSG00000163104.13|SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1
hg19_v2_chr14_-_36990354_36990397	0.0171781	LHX3	ENST00000518149.1|NKX2-1|ENSG00000136352.13|NK2 homeobox 1
hg19_v2_chr1_-_45988542_45988719	0.0118884	LHX3	ENST00000424390.1|PRDX1|ENSG00000117450.9|peroxiredoxin 1
hg19_v2_chr15_-_20193370_20193370	0.010814	LHX3	ENST00000558565.2|IGHV3OR15-7|ENSG00000259490.2|immunoglobulin heavy variable 3/OR15-7 (pseudogene)
hg19_v2_chr20_+_30063067_30063117	0.00976199	LHX3	ENST00000201979.2|REM1|ENSG00000088320.3|RAS (RAD and GEM)-like GTP-binding 1
hg19_v2_chr8_-_30670384_30670394	0.00956884	LHX3	ENST00000221138.4|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme 	ENST00000518243.1|PPP2CB|ENSG00000104695.8|protein phosphatase 2, catalytic subunit, beta isozyme
hg19_v2_chr3_+_157827841_157827916	0.00898237	LHX3	ENST00000295930.3|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000471994.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000464171.1|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000312179.6|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1 	ENST00000475278.2|RSRC1|ENSG00000174891.8|arginine/serine-rich coiled-coil 1
hg19_v2_chr5_+_126984710_126984752	0.00893334	LHX3	ENST00000379445.3|CTXN3|ENSG00000205279.4|cortexin 3
hg19_v2_chr15_+_75970672_75970672	0.00719422	LHX3	ENST00000435356.1|AC105020.1|ENSG00000203392.2|Uncharacterized protein; cDNA FLJ12988 fis, clone NT2RP3000080
hg19_v2_chr12_-_10282836_10282863	0.00659537	LHX3	ENST00000304084.8|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000353231.5|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A 	ENST00000525605.1|CLEC7A|ENSG00000172243.13|C-type lectin domain family 7, member A
hg19_v2_chrX_+_24167828_24167907	0.00500266	LHX3	ENST00000379188.3|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000419690.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000379177.1|ZFX|ENSG00000005889.11|zinc finger protein, X-linked 	ENST00000304543.5|ZFX|ENSG00000005889.11|zinc finger protein, X-linked
hg19_v2_chr14_+_55493920_55494013	0.00221086	LHX3	ENST00000395472.2|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4 	ENST00000555846.1|SOCS4|ENSG00000180008.8|suppressor of cytokine signaling 4
hg19_v2_chr8_+_119294456_119294486	0.00182529	LHX3	ENST00000366457.2|AC023590.1|ENSG00000225885.2|Uncharacterized protein
hg19_v2_chr17_-_60142609_60142657	3.9005e-05	LHX3	ENST00000397786.2|MED13|ENSG00000108510.5|mediator complex subunit 13
hg19_v2_chr18_+_72201829_72201845	1.28725e-06	LHX3	ENST00000582365.1|CNDP1|ENSG00000150656.10|carnosine dipeptidase 1 (metallopeptidase M20 family)
