ISMARA results: bHLH

Motif ID: bHLH_family.p2

Gene Symbol	Entrez ID	Gene Name
ARNTL	406	aryl hydrocarbon receptor nuclear translocator-like
ARNTL2	56938	aryl hydrocarbon receptor nuclear translocator-like 2
CLOCK	9575	clock homolog (mouse)
HES6	55502	hairy and enhancer of split 6 (Drosophila)
HEY1	23462	hairy/enhancer-of-split related with YRPW motif 1
HEY2	23493	hairy/enhancer-of-split related with YRPW motif 2
HEYL	26508	hairy/enhancer-of-split related with YRPW motif-like
ID1	3397	inhibitor of DNA binding 1, dominant negative helix-loop-helix protein
MITF	4286	microphthalmia-associated transcription factor
MLXIPL	51085	MLX interacting protein-like
MNT	4335	MAX binding protein
MXD3	83463	MAX dimerization protein 3
MXD4	10608	MAX dimerization protein 4
MXI1	4601	MAX interactor 1
NPAS2	4862	neuronal PAS domain protein 2
OLIG1	116448	oligodendrocyte transcription factor 1
OLIG2	10215	oligodendrocyte lineage transcription factor 2
TFE3	7030	transcription factor binding to IGHM enhancer 3

Gene	Promoter	Pearson	P-value	Plot
MXI1	chr10_+_111969988, chr10_+_111985628	-0.60	4.4e-04	Click!
ARNTL	chr11_+_13299391	0.42	2.1e-02	Click!
ARNTL2	chr12_-_27599557	-0.38	4.0e-02	Click!
MITF	chr3_+_69985750	0.38	4.1e-02	Click!
MLXIPL	chr7_-_73038814	-0.36	4.8e-02	Click!
ID1	chr20_+_30193083	-0.30	1.1e-01	Click!
HEY2	chr6_+_126070738	0.29	1.1e-01	Click!
HEYL	chr1_-_40098639	-0.27	1.5e-01	Click!
MNT	chr17_-_2304217	-0.22	2.3e-01	Click!
CLOCK	chr4_-_56412968	0.22	2.5e-01	Click!
TFE3	chrX_-_48900752	-0.21	2.6e-01	Click!
MXD4	chr4_-_2263808	-0.17	3.6e-01	Click!
NPAS2	chr2_+_101436491	-0.11	5.8e-01	Click!
HES6	chr2_-_239148545	0.10	5.9e-01	Click!
OLIG1	chr21_+_34442446	-0.10	5.9e-01	Click!
OLIG2	chr21_+_34398210	-0.09	6.4e-01	Click!
MXD3	chr5_-_176739291	-0.09	6.5e-01	Click!
HEY1	chr8_-_80679897	0.01	9.8e-01	Click!

Search:

Show entries

Showing 1 to 20 of 200 entries

Promoter	Score	Refseq	Gene Symbol	Gene Name
chr12_-_58146110	5.154		CDK4	cyclin-dependent kinase 4
chr12_-_58146118	5.107	NM_000075	CDK4	cyclin-dependent kinase 4
chr12_-_58146025	4.872		CDK4	cyclin-dependent kinase 4
chr12_-_58146108	3.512		CDK4	cyclin-dependent kinase 4
chr11_+_61560401	2.840		FEN1	flap structure-specific endonuclease 1
chr2_-_10588451	2.520	NM_002539	ODC1	ornithine decarboxylase 1
chr17_+_39382878	2.500	NM_031961	KRTAP9-2	keratin associated protein 9-2
chr5_-_172755195	2.319		STC2	stanniocalcin 2
chr11_+_61560352	2.284		FEN1	flap structure-specific endonuclease 1
chr16_+_89778242	1.999		LOC100128881	uncharacterized LOC100128881
chr11_+_61560108	1.988	NM_004111	FEN1	flap structure-specific endonuclease 1
chr3_+_99536667	1.933	NM_032359	C3orf26	chromosome 3 open reading frame 26
chr5_-_172755418	1.883		STC2	stanniocalcin 2
chr2_+_172864803	1.872	NM_199227	METAP1D	methionyl aminopeptidase type 1D (mitochondrial)
chr5_+_150827138	1.860	NM_078483	SLC36A1	solute carrier family 36 (proton/amino acid symporter), member 1
chr2_-_10588273	1.830		ODC1	ornithine decarboxylase 1
chrX_-_100603956	1.789	NM_004085	TIMM8A	translocase of inner mitochondrial membrane 8 homolog A (yeast)
chr17_+_39261640	1.737	NM_001146041	KRTAP4-9	keratin associated protein 4-9
chr1_-_26233367	1.720	NM_203399	STMN1	stathmin 1
chr14_-_20923266	1.686	NM_017807	OSGEP	O-sialoglycoprotein endopeptidase

Search:

Show entries

Showing 1 to 20 of 31 entries

enrichment	p-value	GO term	description
3.21	1.72e-02	GO:0015682	ferric iron transport
3.21	1.72e-02	GO:0033572	transferrin transport
2.19	4.77e-04	GO:0042254	ribosome biogenesis
2.02	1.33e-02	GO:0006403	RNA localization
1.99	3.55e-02	GO:0050657	nucleic acid transport
1.99	3.55e-02	GO:0050658	RNA transport
1.99	3.55e-02	GO:0051236	establishment of RNA localization
1.98	9.19e-03	GO:0015931	nucleobase, nucleoside, nucleotide and nucleic acid transport
1.92	1.11e-03	GO:0034470	ncRNA processing
1.80	4.13e-04	GO:0034660	ncRNA metabolic process
1.80	1.57e-02	GO:0022613	ribonucleoprotein complex biogenesis
1.77	1.92e-02	GO:0071843	cellular component biogenesis at cellular level
1.58	4.98e-02	GO:0015672	monovalent inorganic cation transport
1.52	2.46e-06	GO:0055085	transmembrane transport
1.51	3.44e-04	GO:0006396	RNA processing
1.47	2.31e-02	GO:0016071	mRNA metabolic process
1.29	1.04e-03	GO:0016070	RNA metabolic process
1.28	3.63e-05	GO:0090304	nucleic acid metabolic process
1.27	1.46e-03	GO:0010467	gene expression
1.25	1.94e-05	GO:0006139	nucleobase, nucleoside, nucleotide and nucleic acid metabolic process

Search:

Show entries

Showing 1 to 20 of 25 entries

enrichment	p-value	GO term	description
4.38	3.55e-02	GO:0005732	small nucleolar ribonucleoprotein complex
3.37	5.15e-03	GO:0044452	nucleolar part
1.73	1.28e-08	GO:0005730	nucleolus
1.40	7.12e-11	GO:0031981	nuclear lumen
1.38	1.22e-06	GO:0005654	nucleoplasm
1.36	8.34e-12	GO:0031974	membrane-enclosed lumen
1.36	5.76e-11	GO:0070013	intracellular organelle lumen
1.36	1.37e-10	GO:0044428	nuclear part
1.35	8.83e-11	GO:0043233	organelle lumen
1.34	4.22e-02	GO:0031967	organelle envelope
1.21	3.86e-04	GO:0043228	non-membrane-bounded organelle
1.21	3.86e-04	GO:0043232	intracellular non-membrane-bounded organelle
1.19	9.34e-05	GO:0032991	macromolecular complex
1.18	2.04e-03	GO:0043234	protein complex
1.17	2.47e-08	GO:0044422	organelle part
1.17	3.26e-08	GO:0044446	intracellular organelle part
1.14	8.22e-05	GO:0005634	nucleus
1.11	3.56e-06	GO:0005737	cytoplasm
1.11	1.29e-02	GO:0044444	cytoplasmic part
1.10	2.45e-11	GO:0005622	intracellular

Search:

Show entries

Showing 1 to 6 of 6 entries

enrichment	p-value	GO term	description
1.36	4.30e-03	GO:0022891	substrate-specific transmembrane transporter activity
1.31	2.46e-02	GO:0022857	transmembrane transporter activity
1.30	2.69e-02	GO:0022892	substrate-specific transporter activity
1.27	3.98e-02	GO:0005215	transporter activity
1.16	4.02e-11	GO:0005515	protein binding
1.07	2.10e-05	GO:0005488	binding