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Mucociliary differentiation, bronchial epithelial cells, human (Ross 2007)
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Results for AAGGCAC
Z-value: 1.25
Motif logo
miRNA associated with seed AAGGCAC
| Name | miRBASE accession |
|---|---|
|
hsa-miR-124-3p.1
|
MIMAT0000422 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr4_-_149365827 Show fit | 7.04 |
ENST00000344721.4
|
nuclear receptor subfamily 3, group C, member 2 |
|
| chr21_+_36041688 Show fit | 4.52 |
ENST00000360731.3
ENST00000349499.2 |
chloride intracellular channel 6 |
|
| chr1_+_228870824 Show fit | 4.38 |
ENST00000366691.3
|
ras homolog family member U |
|
| chr18_-_45663666 Show fit | 4.32 |
ENST00000535628.2
|
zinc finger and BTB domain containing 7C |
|
| chr6_-_90121938 Show fit | 4.08 |
ENST00000369415.4
|
Ras-related GTP binding D |
|
| chr19_+_709101 Show fit | 4.05 |
ENST00000338448.5
|
paralemmin |
|
| chr4_+_25657444 Show fit | 3.79 |
ENST00000504570.1
ENST00000382051.3 |
solute carrier family 34 (type II sodium/phosphate contransporter), member 2 |
|
| chr14_+_67999999 Show fit | 3.67 |
ENST00000329153.5
|
pleckstrin homology domain containing, family H (with MyTH4 domain) member 1 |
|
| chr19_-_7990991 Show fit | 3.52 |
ENST00000318978.4
|
cortexin 1 |
|
| chr14_+_77648167 Show fit | 3.44 |
ENST00000554346.1
ENST00000298351.4 |
transmembrane protein 63C |
Network of associatons between targets according to the STRING database.
First level regulatory network of AAGGCAC
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.9 | GO:0007156 | homophilic cell adhesion via plasma membrane adhesion molecules(GO:0007156) |
| 0.0 | 5.2 | GO:0006749 | glutathione metabolic process(GO:0006749) |
| 0.3 | 4.3 | GO:1903025 | regulation of RNA polymerase II regulatory region sequence-specific DNA binding(GO:1903025) |
| 0.5 | 4.1 | GO:0071233 | cellular response to leucine(GO:0071233) |
| 0.5 | 4.0 | GO:0060160 | negative regulation of dopamine receptor signaling pathway(GO:0060160) |
| 0.2 | 4.0 | GO:0055089 | fatty acid homeostasis(GO:0055089) |
| 0.5 | 3.9 | GO:0018406 | protein C-linked glycosylation(GO:0018103) peptidyl-tryptophan modification(GO:0018211) protein C-linked glycosylation via tryptophan(GO:0018317) protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan(GO:0018406) |
| 0.4 | 3.8 | GO:0072502 | cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502) |
| 1.1 | 3.2 | GO:0090076 | relaxation of skeletal muscle(GO:0090076) |
| 0.2 | 3.2 | GO:0060628 | regulation of ER to Golgi vesicle-mediated transport(GO:0060628) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.6 | GO:0016605 | PML body(GO:0016605) |
| 0.1 | 5.3 | GO:0034707 | chloride channel complex(GO:0034707) |
| 0.1 | 4.8 | GO:0031526 | brush border membrane(GO:0031526) |
| 0.7 | 4.1 | GO:1990131 | Gtr1-Gtr2 GTPase complex(GO:1990131) |
| 0.2 | 3.8 | GO:0032591 | dendritic spine membrane(GO:0032591) |
| 0.3 | 3.5 | GO:1990712 | HFE-transferrin receptor complex(GO:1990712) |
| 0.1 | 3.2 | GO:0005790 | smooth endoplasmic reticulum(GO:0005790) |
| 0.1 | 3.1 | GO:0030173 | integral component of Golgi membrane(GO:0030173) |
| 0.9 | 2.8 | GO:0072534 | perineuronal net(GO:0072534) |
| 0.1 | 2.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.7 | GO:0003707 | steroid hormone receptor activity(GO:0003707) |
| 0.1 | 5.1 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.2 | 5.0 | GO:0000030 | mannosyltransferase activity(GO:0000030) |
| 0.1 | 4.1 | GO:0017080 | sodium channel regulator activity(GO:0017080) |
| 0.8 | 4.0 | GO:0031750 | D3 dopamine receptor binding(GO:0031750) |
| 0.4 | 3.8 | GO:0015321 | sodium-dependent phosphate transmembrane transporter activity(GO:0015321) |
| 0.0 | 3.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 3.2 | GO:0086008 | voltage-gated potassium channel activity involved in cardiac muscle cell action potential repolarization(GO:0086008) |
| 0.0 | 3.2 | GO:0003705 | transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705) |
| 0.0 | 3.1 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
Gene overrepresentation in C2:CP category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 4.7 | PID IL6 7 PATHWAY | IL6-mediated signaling events |
| 0.0 | 3.1 | PID RAC1 REG PATHWAY | Regulation of RAC1 activity |
| 0.1 | 3.0 | PID ARF6 PATHWAY | Arf6 signaling events |
| 0.1 | 2.9 | PID SMAD2 3PATHWAY | Regulation of cytoplasmic and nuclear SMAD2/3 signaling |
| 0.0 | 2.7 | PID HNF3A PATHWAY | FOXA1 transcription factor network |
| 0.1 | 2.5 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.0 | 2.4 | PID ERBB4 PATHWAY | ErbB4 signaling events |
| 0.1 | 2.0 | PID HEDGEHOG 2PATHWAY | Signaling events mediated by the Hedgehog family |
| 0.0 | 2.0 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
Gene overrepresentation in C2:CP:REACTOME category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.4 | REACTOME TRANSPORT OF INORGANIC CATIONS ANIONS AND AMINO ACIDS OLIGOPEPTIDES | Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides |
| 0.1 | 4.7 | REACTOME NUCLEAR RECEPTOR TRANSCRIPTION PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
| 0.1 | 4.6 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.2 | 3.3 | REACTOME TRANSPORT OF ORGANIC ANIONS | Genes involved in Transport of organic anions |
| 0.1 | 2.9 | REACTOME IRON UPTAKE AND TRANSPORT | Genes involved in Iron uptake and transport |
| 0.0 | 2.6 | REACTOME NCAM1 INTERACTIONS | Genes involved in NCAM1 interactions |
| 0.2 | 2.5 | REACTOME SIGNALING BY EGFR IN CANCER | Genes involved in Signaling by EGFR in Cancer |
| 0.1 | 2.4 | REACTOME TRANSPORT OF VITAMINS NUCLEOSIDES AND RELATED MOLECULES | Genes involved in Transport of vitamins, nucleosides, and related molecules |
| 0.1 | 2.1 | REACTOME OTHER SEMAPHORIN INTERACTIONS | Genes involved in Other semaphorin interactions |
| 0.1 | 2.0 | REACTOME REGULATION OF RHEB GTPASE ACTIVITY BY AMPK | Genes involved in Regulation of Rheb GTPase activity by AMPK |