Motif ID: NANOG.p2

Z-value: 1.139


Transcription factors associated with NANOG.p2:

Gene SymbolEntrez IDGene Name
NANOG 79923 Nanog homeobox

Activity-expression correlation:

GenePromoterPearsonP-valuePlot
NANOGchr12_+_79420250.676.8e-02Click!


Activity profile for motif NANOG.p2.

activity profile for motif NANOG.p2


Sorted Z-values histogram for motif NANOG.p2

Sorted Z-values for motif NANOG.p2



Network of associatons between targets according to the STRING database.



First level regulatory network of NANOG.p2

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr4_+_77356252 2.136 NM_020859
SHROOM3
shroom family member 3
chr10_-_105845556 1.400 COL17A1
collagen, type XVII, alpha 1
chr10_-_105845619 1.380 NM_000494
COL17A1
collagen, type XVII, alpha 1
chr10_+_118187381 1.202 NM_001011709
PNLIPRP3
pancreatic lipase-related protein 3
chr6_-_136847078 1.154 NM_001198608
NM_001198609
NM_001198611
MAP7


microtubule-associated protein 7


chr9_+_12693385 1.108 NM_000550
TYRP1
tyrosinase-related protein 1
chr1_-_116383692 0.964 NM_005599
NHLH2
nescient helix loop helix 2
chr17_-_56494889 0.832 RNF43
ring finger protein 43
chr9_-_5304579 0.831 NM_005059
NM_134441
RLN2

relaxin 2

chr9_-_124984018 0.800 NM_001242335
LHX6
LIM homeobox 6
chr7_-_25268057 0.771 NM_022150
NPVF
neuropeptide VF precursor
chr12_-_52828105 0.736 NM_004693
KRT75
keratin 75
chr6_-_31107110 0.722 NM_014069
PSORS1C2
psoriasis susceptibility 1 candidate 2
chr18_+_29027731 0.719 NM_001944
DSG3
desmoglein 3
chr2_-_69098502 0.713 NM_014482
BMP10
bone morphogenetic protein 10
chr9_-_124989755 0.706 NM_001242334
LHX6
LIM homeobox 6
chr3_-_71778268 0.660 NM_001134650
EIF4E3
eukaryotic translation initiation factor 4E family member 3
chr8_+_32504250 0.660 NM_013959
NRG1
neuregulin 1
chr17_-_56494930 0.653 NM_017763
RNF43
ring finger protein 43
chr3_-_151034514 0.624 NM_023915
GPR87
G protein-coupled receptor 87
chr2_-_165424993 0.617 GRB14
growth factor receptor-bound protein 14
chr11_-_120008801 0.615 TRIM29
tripartite motif containing 29
chr11_-_85430117 0.613 NM_206929
SYTL2
synaptotagmin-like 2
chr3_+_159557649 0.591 NM_001197109
SCHIP1
schwannomin interacting protein 1
chr18_+_55888838 0.567 NEDD4L
neural precursor cell expressed, developmentally down-regulated 4-like
chr10_+_82173574 0.563 NM_001243778
NM_001243782
C10orf58

chromosome 10 open reading frame 58

chr12_-_52914080 0.560 NM_000424
KRT5
keratin 5
chr18_+_55888799 0.557 NEDD4L
neural precursor cell expressed, developmentally down-regulated 4-like
chr6_-_136847609 0.542 MAP7
microtubule-associated protein 7
chr9_-_5339745 0.540 NM_006911
RLN1
relaxin 1
chr8_-_40755328 0.530 NM_001135731
NM_024645
ZMAT4

zinc finger, matrin-type 4

chr5_-_35938736 0.530 NM_001042625
NM_144647
CAPSL

calcyphosine-like

chr12_+_47610244 0.527 FAM113B
family with sequence similarity 113, member B
chr17_-_38938785 0.510 NM_181537
KRT27
keratin 27
chr2_-_113594325 0.499 NM_000576
IL1B
interleukin 1, beta
chr14_-_81864726 0.497 NM_033104
STON2
stonin 2
chr3_+_111717585 0.496 NM_001008272
NM_013259
TAGLN3

transgelin 3

chr7_+_129015483 0.491 NM_001130722
AHCYL2
adenosylhomocysteinase-like 2
chr19_-_51522953 0.485 NM_145888
KLK10
kallikrein-related peptidase 10
chr1_-_23886284 0.472 NM_002167
ID3
inhibitor of DNA binding 3, dominant negative helix-loop-helix protein
chr11_-_120008738 0.471 TRIM29
tripartite motif containing 29
chr1_+_160370363 0.458 NM_020335
VANGL2
vang-like 2 (van gogh, Drosophila)
chr1_-_42384326 0.455 HIVEP3
human immunodeficiency virus type I enhancer binding protein 3
chr12_-_16760935 0.447 NM_001001395
NM_001243609
LMO3

LIM domain only 3 (rhombotin-like 2)

chr20_+_2276612 0.422 NM_003245
TGM3
transglutaminase 3 (E polypeptide, protein-glutamine-gamma-glutamyltransferase)
chr7_-_41742666 0.418 NM_002192
INHBA
inhibin, beta A
chr1_+_35246789 0.382 NM_024009
GJB3
gap junction protein, beta 3, 31kDa
chr17_-_9694613 0.380 NM_001105571
NM_001220493
DHRS7C

dehydrogenase/reductase (SDR family) member 7C

chr10_-_123356158 0.379 NM_001144915
FGFR2
fibroblast growth factor receptor 2
chr3_+_159557745 0.378 SCHIP1
schwannomin interacting protein 1
chr11_-_85430382 0.369 NM_001162952
NM_206930
SYTL2

synaptotagmin-like 2

chr10_-_116444374 0.346 NM_001003407
NM_001003408
ABLIM1

actin binding LIM protein 1

chr11_-_58980321 0.342 NM_001039396
MPEG1
macrophage expressed 1
chr18_+_20735788 0.337 NM_138375
CABLES1
Cdk5 and Abl enzyme substrate 1
chr5_+_147258273 0.335 NM_054023
SCGB3A2
secretoglobin, family 3A, member 2
chr17_-_39165343 0.333 NM_031958
KRTAP3-1
keratin associated protein 3-1
chr18_+_55888750 0.325 NM_001144966
NEDD4L
neural precursor cell expressed, developmentally down-regulated 4-like
chrX_-_117107700 0.325 NM_033495
NM_001168300
KLHL13

kelch-like 13 (Drosophila)

chr12_-_15114495 0.321 NM_001175
ARHGDIB
Rho GDP dissociation inhibitor (GDI) beta
chr18_-_53089722 0.317 NM_001243233
TCF4
transcription factor 4
chr19_-_33360641 0.314 NM_001126335
NM_001243036
NM_014270
SLC7A9


solute carrier family 7 (glycoprotein-associated amino acid transporter light chain, bo,+ system), member 9


chrX_+_41306686 0.314 NM_022567
NYX
nyctalopin
chr1_-_94586678 0.311 NM_000350
ABCA4
ATP-binding cassette, sub-family A (ABC1), member 4
chr14_+_76837689 0.310 NM_004452
ESRRB
estrogen-related receptor beta
chr12_-_24103842 0.308 SOX5
SRY (sex determining region Y)-box 5
chr1_+_209878135 0.304 NM_005525
HSD11B1
hydroxysteroid (11-beta) dehydrogenase 1
chr12_+_47610051 0.302 NM_138371
FAM113B
family with sequence similarity 113, member B
chrX_-_48828250 0.299 NM_004979
KCND1
potassium voltage-gated channel, Shal-related subfamily, member 1
chr7_-_121944485 0.298 NM_001024613
NM_001160264
FEZF1

FEZ family zinc finger 1

chr1_+_84864214 0.296 NM_021233
DNASE2B
deoxyribonuclease II beta
chr10_+_24755459 0.295 KIAA1217
KIAA1217
chr12_-_57328044 0.292 NM_148897
SDR9C7
short chain dehydrogenase/reductase family 9C, member 7
chr10_+_49609641 0.289 NM_002750
NM_139046
NM_139047
NM_139049
MAPK8



mitogen-activated protein kinase 8



chr10_-_123353771 0.289 NM_001144916
FGFR2
fibroblast growth factor receptor 2
chr17_-_41739261 0.286 NM_001040002
MEOX1
mesenchyme homeobox 1
chr6_-_55740387 0.286 BMP5
bone morphogenetic protein 5
chr11_+_10476665 0.282 NM_001025389
AMPD3
adenosine monophosphate deaminase 3
chr7_-_37025696 0.280 ELMO1
engulfment and cell motility 1
chr4_-_159956332 0.274 NM_152543
C4orf45
chromosome 4 open reading frame 45
chr3_-_124842442 0.273 SLC12A8
solute carrier family 12 (potassium/chloride transporters), member 8
chr21_-_39956823 0.273 NM_001243429
ERG
v-ets erythroblastosis virus E26 oncogene homolog (avian)
chr7_+_94297448 0.269 PEG10
paternally expressed 10
chr6_+_90276556 0.267 NM_001242814
ANKRD6
ankyrin repeat domain 6
chr10_-_21435487 0.263 NM_001010896
NM_001177483
C10orf113

chromosome 10 open reading frame 113

chr12_-_110252600 0.258 NM_001177431
NM_001177428
NM_001177433
NM_147204
TRPV4



transient receptor potential cation channel, subfamily V, member 4



chr1_+_167298382 0.258 POU2F1
POU class 2 homeobox 1
chr11_-_120008848 0.254 NM_012101
TRIM29
tripartite motif containing 29
chr1_+_156119734 0.252 NM_001193301
SEMA4A
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A
chr11_-_115088628 0.252 CADM1
cell adhesion molecule 1
chr12_-_89745997 0.249 DUSP6
dual specificity phosphatase 6
chr19_-_51523272 0.249 NM_002776
NM_001077500
KLK10

kallikrein-related peptidase 10

chr1_+_15256295 0.245 NM_001018001
KAZN
kazrin, periplakin interacting protein
chr1_+_151739130 0.244 NM_016178
OAZ3
ornithine decarboxylase antizyme 3
chr17_+_54230835 0.244 NM_153228
ANKFN1
ankyrin-repeat and fibronectin type III domain containing 1
chr3_-_120400957 0.241 HGD
homogentisate 1,2-dioxygenase
chr11_-_104916041 0.240 NM_001017534
NM_052889
CARD16

caspase recruitment domain family, member 16

chr8_-_27101240 0.239 STMN4
stathmin-like 4
chr3_-_74570262 0.236 NM_020872
CNTN3
contactin 3 (plasmacytoma associated)
chrX_+_41548225 0.234 NM_001097579
NM_005300
GPR34

G protein-coupled receptor 34

chr5_-_112630301 0.234 MCC
mutated in colorectal cancers
chr14_+_23305816 0.234 MMP14
matrix metallopeptidase 14 (membrane-inserted)
chr3_-_11623829 0.234 NM_001128220
VGLL4
vestigial like 4 (Drosophila)
chr5_+_52776479 0.234 FST
follistatin
chr16_+_57406398 0.234 NM_002996
CX3CL1
chemokine (C-X3-C motif) ligand 1
chr11_+_58390145 0.232 NM_000614
CNTF
ciliary neurotrophic factor
chr3_-_121379757 0.229 NM_005335
HCLS1
hematopoietic cell-specific Lyn substrate 1
chr5_+_36608430 0.228 NM_001166695
SLC1A3
solute carrier family 1 (glial high affinity glutamate transporter), member 3
chr18_+_21572736 0.228 NM_153211
TTC39C
tetratricopeptide repeat domain 39C
chr8_+_26150731 0.226 NM_001177591
PPP2R2A
protein phosphatase 2, regulatory subunit B, alpha
chr19_-_51456159 0.225 NM_001077491
NM_001077492
NM_012427
KLK5


kallikrein-related peptidase 5


chr3_-_27764197 0.224 EOMES
eomesodermin
chrX_-_133792497 0.220 NM_021796
PLAC1
placenta-specific 1
chr4_-_123542165 0.219 NM_001207006
NM_021803
IL21

interleukin 21

chr7_+_114066554 0.218 NM_001172767
NM_148899
FOXP2

forkhead box P2

chr6_+_50786438 0.215 NM_003221
TFAP2B
transcription factor AP-2 beta (activating enhancer binding protein 2 beta)
chr12_-_24103953 0.215 SOX5
SRY (sex determining region Y)-box 5
chr16_+_56815703 0.214 NM_001242795
NUP93
nucleoporin 93kDa
chr9_-_117156684 0.213 NM_030767
AKNA
AT-hook transcription factor
chr18_-_28742744 0.212 NM_004948
NM_024421
DSC1

desmocollin 1

chr12_-_89746244 0.211 NM_001946
NM_022652
DUSP6

dual specificity phosphatase 6

chr19_+_7968701 0.210 MAP2K7
mitogen-activated protein kinase kinase 7
chr21_+_43710190 0.207 ABCG1
ATP-binding cassette, sub-family G (WHITE), member 1
chr17_-_1248346 0.204 PAFAH1B1
platelet-activating factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
chr9_+_130026755 0.203 NM_032293
GARNL3
GTPase activating Rap/RanGAP domain-like 3
chr3_-_138478184 0.203 NM_006219
PIK3CB
phosphoinositide-3-kinase, catalytic, beta polypeptide
chr5_-_112630557 0.201 NM_002387
MCC
mutated in colorectal cancers
chr3_-_121379701 0.201 HCLS1
hematopoietic cell-specific Lyn substrate 1
chr4_+_78432905 0.199 NM_006419
CXCL13
chemokine (C-X-C motif) ligand 13
chr21_-_27945267 0.199 NM_052954
CYYR1
cysteine/tyrosine-rich 1
chr12_+_41831484 0.197 NM_013377
PDZRN4
PDZ domain containing ring finger 4
chr13_+_109281569 0.197 NM_001198950
MYO16
myosin XVI
chr1_+_16090993 0.189 NM_001024215
FBLIM1
filamin binding LIM protein 1
chr6_-_111927059 0.188 TRAF3IP2
TRAF3 interacting protein 2
chr1_+_6105980 0.188 NM_001199862
KCNAB2
potassium voltage-gated channel, shaker-related subfamily, beta member 2
chr20_+_43030005 0.188 HNF4A
hepatocyte nuclear factor 4, alpha
chr10_+_98740987 0.188 NM_015652
C10orf12
chromosome 10 open reading frame 12
chr17_-_39296702 0.187 NM_030976
KRTAP4-6
keratin associated protein 4-6
chr1_+_74701070 0.187 NM_015978
TNNI3K
TNNI3 interacting kinase
chr3_+_152880036 0.186 RAP2B
RAP2B, member of RAS oncogene family
chr12_+_81110689 0.185 NM_005593
MYF5
myogenic factor 5
chr18_+_61575203 0.182 SERPINB10
serpin peptidase inhibitor, clade B (ovalbumin), member 10
chr8_+_95653399 0.182 ESRP1
epithelial splicing regulatory protein 1
chr1_-_178840079 0.182 NM_004673
ANGPTL1
angiopoietin-like 1
chr6_-_55740358 0.178 NM_021073
BMP5
bone morphogenetic protein 5
chr5_+_170736287 0.178 NM_021025
TLX3
T-cell leukemia homeobox 3
chr2_+_234959345 0.177 NM_006944
SPP2
secreted phosphoprotein 2, 24kDa
chr6_+_129204285 0.174 NM_000426
NM_001079823
LAMA2

laminin, alpha 2

chr1_-_93399531 0.174


chr3_-_12941547 0.174 IQSEC1
IQ motif and Sec7 domain 1
chr3_-_57234279 0.173 NM_003865
HESX1
HESX homeobox 1
chr19_+_45409003 0.173 NM_000041
APOE
apolipoprotein E
chr1_-_154842725 0.172 NM_001204087
NM_002249
KCNN3

potassium intermediate/small conductance calcium-activated channel, subfamily N, member 3

chr12_-_89746238 0.172 DUSP6
dual specificity phosphatase 6
chr5_-_148758787 0.171 NM_014443
IL17B
interleukin 17B
chr11_-_16424391 0.171 NM_001145819
NM_017508
SOX6

SRY (sex determining region Y)-box 6

chr7_+_18535351 0.170 NM_001204145
NM_001204146
NM_014707
NM_178423
HDAC9



histone deacetylase 9



chr14_+_23305792 0.170 NM_004995
MMP14
matrix metallopeptidase 14 (membrane-inserted)
chr9_-_117111278 0.169 AKNA
AT-hook transcription factor
chr6_+_143929316 0.168 NM_001100166
NM_014721
PHACTR2

phosphatase and actin regulator 2

chr12_-_52604488 0.166 NM_001242696
LOC283403
uncharacterized LOC283403
chr12_-_13103317 0.166 NM_018654
GPRC5D
G protein-coupled receptor, family C, group 5, member D
chr1_+_244216506 0.165 NM_006352
ZNF238
zinc finger protein 238
chr12_+_105153258 0.165 CHST11
carbohydrate (chondroitin 4) sulfotransferase 11
chr5_-_150467220 0.164 NM_001252390
TNIP1
TNFAIP3 interacting protein 1
chr12_-_16759733 0.162 NM_001243610
LMO3
LIM domain only 3 (rhombotin-like 2)
chr11_+_101983170 0.162 NM_001195045
YAP1
Yes-associated protein 1
chr3_-_108672547 0.162 NM_005459
GUCA1C
guanylate cyclase activator 1C
chr10_-_116444112 0.160 ABLIM1
actin binding LIM protein 1
chr3_-_143567163 0.159 NM_173653
SLC9A9
solute carrier family 9 (sodium/hydrogen exchanger), member 9
chr3_+_42190825 0.158 TRAK1
trafficking protein, kinesin binding 1
chr12_-_6486522 0.158 NM_001159575
SCNN1A
sodium channel, nonvoltage-gated 1 alpha
chr5_-_96478502 0.155 NM_153234
LIX1
Lix1 homolog (chicken)
chr6_-_13408368 0.155 NM_001242630
GFOD1
glucose-fructose oxidoreductase domain containing 1
chr4_-_153303663 0.155 NM_001013415
FBXW7
F-box and WD repeat domain containing 7
chr12_-_102874340 0.154 IGF1
insulin-like growth factor 1 (somatomedin C)
chr8_+_32579350 0.153 NM_001159996
NRG1
neuregulin 1
chr6_+_135502521 0.153 MYB
v-myb myeloblastosis viral oncogene homolog (avian)
chr8_-_42234562 0.152 NM_014420
DKK4
dickkopf homolog 4 (Xenopus laevis)
chr10_+_11206928 0.149 NM_001025076
NM_001083591
CELF2

CUGBP, Elav-like family member 2

chrX_-_33357725 0.148 NM_000109
DMD
dystrophin
chr7_-_129592711 0.147 NM_001202498
UBE2H
ubiquitin-conjugating enzyme E2H
chr11_-_83393436 0.146 NM_001142702
DLG2
discs, large homolog 2 (Drosophila)
chr9_+_136501484 0.146 NM_000787
DBH
dopamine beta-hydroxylase (dopamine beta-monooxygenase)
chr12_-_53730003 0.146 NM_001173467
SP7
Sp7 transcription factor
chr16_+_87984948 0.145 NM_001173539
NM_001173540
NM_001173541
NM_017869
NM_079837
BANP




BTG3 associated nuclear protein




chr2_-_180427314 0.144 NM_001113398
ZNF385B
zinc finger protein 385B
chr3_+_152880024 0.144 NM_002886
RAP2B
RAP2B, member of RAS oncogene family
chr10_-_72142344 0.143 NM_018205
NM_018239
LRRC20

leucine rich repeat containing 20

chr19_+_48325098 0.143 NM_000554
CRX
cone-rod homeobox
chr14_-_105259937 0.142 NM_005163
AKT1
v-akt murine thymoma viral oncogene homolog 1
chr1_+_43148048 0.139 NM_004559
YBX1
Y box binding protein 1
chr1_-_205391180 0.139 NM_001001552
NM_001199050
NM_001199051
NM_001199052
LEMD1



LEM domain containing 1



chr18_+_76740274 0.138 NM_171999
SALL3
sal-like 3 (Drosophila)
chr8_-_7287651 0.138 NM_018661
DEFB103B
defensin, beta 103B
chr21_-_31538970 0.138 NM_012131
CLDN17
claudin 17
chr13_+_32313678 0.137 NM_001166058
NM_130806
RXFP2

relaxin/insulin-like family peptide receptor 2

chr8_-_20040612 0.136 NM_001135691
NM_001142324
NM_001142325
NM_003053
SLC18A1



solute carrier family 18 (vesicular monoamine), member 1



chr2_+_102608305 0.136 NM_004633
IL1R2
interleukin 1 receptor, type II
chrX_+_105412297 0.136 NM_001171020
NM_152423
MUM1L1

melanoma associated antigen (mutated) 1-like 1

chr19_+_1026271 0.136 NM_004368
NM_201277
CNN2

calponin 2


Gene Ontology Analysis

Gene overrepresentation in process category:

enrichment   p-value GO term description
1.60 8.92e-10 GO:0032502 developmental process
1.62 3.42e-09 GO:0007275 multicellular organismal development
1.46 4.97e-09 GO:0032501 multicellular organismal process
1.69 1.31e-08 GO:0048731 system development
1.63 3.97e-08 GO:0048856 anatomical structure development
1.85 1.19e-07 GO:0048513 organ development
2.14 4.64e-05 GO:0009891 positive regulation of biosynthetic process
2.14 6.16e-05 GO:0031328 positive regulation of cellular biosynthetic process
2.25 1.82e-04 GO:0010628 positive regulation of gene expression
2.53 1.95e-04 GO:0045944 positive regulation of transcription from RNA polymerase II promoter
2.29 2.77e-04 GO:0045893 positive regulation of transcription, DNA-dependent
2.18 8.43e-04 GO:0051254 positive regulation of RNA metabolic process
2.06 1.11e-03 GO:0051173 positive regulation of nitrogen compound metabolic process
2.08 1.44e-03 GO:0010557 positive regulation of macromolecule biosynthetic process
1.90 2.07e-03 GO:0006357 regulation of transcription from RNA polymerase II promoter
1.94 2.21e-03 GO:0050793 regulation of developmental process
1.78 2.29e-03 GO:0009893 positive regulation of metabolic process
3.23 2.33e-03 GO:0008544 epidermis development
2.04 2.41e-03 GO:0045935 positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
1.57 3.21e-03 GO:0030154 cell differentiation
1.94 4.17e-03 GO:0009888 tissue development
3.02 4.52e-03 GO:0007601 visual perception
3.02 4.52e-03 GO:0050953 sensory perception of light stimulus
3.19 5.11e-03 GO:0007517 muscle organ development
1.54 6.36e-03 GO:0048869 cellular developmental process
2.05 7.45e-03 GO:0045595 regulation of cell differentiation
2.49 7.69e-03 GO:0010551 regulation of gene-specific transcription from RNA polymerase II promoter
1.64 1.43e-02 GO:0007399 nervous system development
1.72 1.77e-02 GO:0031325 positive regulation of cellular metabolic process
3.26 1.88e-02 GO:0010552 positive regulation of gene-specific transcription from RNA polymerase II promoter
1.72 2.62e-02 GO:0010604 positive regulation of macromolecule metabolic process
4.99 4.77e-02 GO:0045834 positive regulation of lipid metabolic process

Gene overrepresentation in compartment category:

enrichment   p-value GO term description
4.43 1.66e-03 GO:0045095 keratin filament
1.49 4.66e-03 GO:0005576 extracellular region
2.81 3.13e-02 GO:0005882 intermediate filament

Gene overrepresentation in function category:

enrichment   p-value GO term description
1.80 2.46e-03 GO:0001071 nucleic acid binding transcription factor activity
1.80 2.46e-03 GO:0003700 sequence-specific DNA binding transcription factor activity