ISMARA results: TAF1

Project

ENCODE cell lines, expression (Ernst 2011)

Navigation

Downloads

Results for TAF1

Z-value: 3.88

Motif logo

Transcription factors associated with TAF1

Gene Symbol	Gene ID	Gene Info
TAF1 Ensembl NCBI GeneCards UniProt	ENSG00000147133.11	TAF1

Activity-expression correlation:

Gene	Promoter	Pearson corr. coef.	P-value	Plot
TAF1	hg19_v2_chrX_+_70586082_70586114	0.47	6.4e-02	Click!

Activity profile of TAF1 motif

Sorted Z-values of TAF1 motif

Network of associatons between targets according to the STRING database.

First level regulatory network of TAF1

View svg image
View png image

Top targets:

Search:

Show entries

Promoter	Score	Transcript	Gene	Gene Info
chr1_-_52870104	6.54	ENST00000371568.3	ORC1	origin recognition complex, subunit 1
chr19_-_13044494	6.27	ENST00000593021.1 ENST00000587981.1 ENST00000423140.2 ENST00000314606.4	FARSA	phenylalanyl-tRNA synthetase, alpha subunit
chr1_-_52870059	6.05	ENST00000371566.1	ORC1	origin recognition complex, subunit 1
chr1_+_46049706	6.04	ENST00000527470.1 ENST00000525515.1 ENST00000537798.1 ENST00000402363.3 ENST00000528238.1 ENST00000350030.3 ENST00000470768.1 ENST00000372052.4 ENST00000351223.3	NASP	nuclear autoantigenic sperm protein (histone-binding)
chr1_+_93544821	4.92	ENST00000370303.4	MTF2	metal response element binding transcription factor 2
chr1_+_93544791	4.85	ENST00000545708.1 ENST00000540243.1 ENST00000370298.4	MTF2	metal response element binding transcription factor 2
chr2_-_27435125	4.71	ENST00000414408.1 ENST00000310574.3	SLC5A6	solute carrier family 5 (sodium/multivitamin and iodide cotransporter), member 6
chr11_-_73687997	4.69	ENST00000545212.1	UCP2	uncoupling protein 2 (mitochondrial, proton carrier)
chr7_+_152456904	4.62	ENST00000537264.1	ACTR3B	ARP3 actin-related protein 3 homolog B (yeast)
chr16_-_30006922	4.58	ENST00000564026.1	HIRIP3	HIRA interacting protein 3

Showing 1 to 10 of 200 entries

Gene Ontology Analysis

Gene overrepresentation in C2:CP category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	30.0	PID E2F PATHWAY	E2F transcription factor network
0.2	20.4	PID AR TF PATHWAY	Regulation of Androgen receptor activity
0.2	12.6	PID AURORA B PATHWAY	Aurora B signaling
0.1	9.4	PID ERA GENOMIC PATHWAY	Validated nuclear estrogen receptor alpha network
0.3	9.1	ST G ALPHA S PATHWAY	G alpha s Pathway
0.1	8.8	PID RB 1PATHWAY	Regulation of retinoblastoma protein
0.1	8.3	PID PLK1 PATHWAY	PLK1 signaling events
0.1	7.1	PID NOTCH PATHWAY	Notch signaling pathway
0.2	6.9	PID HIV NEF PATHWAY	HIV-1 Nef: Negative effector of Fas and TNF-alpha
0.1	6.7	PID MYC ACTIV PATHWAY	Validated targets of C-MYC transcriptional activation

Showing 1 to 10 of 69 entries

Gene overrepresentation in cellular_component category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	75.3	GO:0005654	nucleoplasm(GO:0005654)
0.1	26.3	GO:0005743	mitochondrial inner membrane(GO:0005743)
0.1	21.1	GO:0005759	mitochondrial matrix(GO:0005759)
0.7	20.2	GO:0000314	organellar small ribosomal subunit(GO:0000314) mitochondrial small ribosomal subunit(GO:0005763)
0.1	17.1	GO:0005681	spliceosomal complex(GO:0005681)
0.4	16.1	GO:0000313	organellar ribosome(GO:0000313) mitochondrial ribosome(GO:0005761)
0.1	15.5	GO:0000151	ubiquitin ligase complex(GO:0000151)
0.1	12.9	GO:0000790	nuclear chromatin(GO:0000790)
1.0	12.6	GO:0005664	origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.2	12.2	GO:0045271	mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)

Showing 1 to 10 of 235 entries

Gene overrepresentation in molecular_function category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	81.7	GO:0003677	DNA binding(GO:0003677)
0.2	33.7	GO:0003735	structural constituent of ribosome(GO:0003735)
0.4	21.1	GO:0003954	NADH dehydrogenase activity(GO:0003954)
0.1	14.9	GO:0061659	ubiquitin protein ligase activity(GO:0061630) ubiquitin-like protein ligase activity(GO:0061659)
0.3	14.2	GO:0019212	phosphatase inhibitor activity(GO:0019212)
0.2	13.9	GO:0034212	peptide N-acetyltransferase activity(GO:0034212)
2.9	11.7	GO:0004826	phenylalanine-tRNA ligase activity(GO:0004826)
0.2	11.4	GO:0008186	ATP-dependent RNA helicase activity(GO:0004004) RNA-dependent ATPase activity(GO:0008186)
0.2	11.3	GO:0003743	translation initiation factor activity(GO:0003743)
0.1	11.2	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity(GO:0036459) ubiquitinyl hydrolase activity(GO:0101005)

Showing 1 to 10 of 303 entries

Gene overrepresentation in C2:CP:REACTOME category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	30.8	REACTOME RESPIRATORY ELECTRON TRANSPORT ATP SYNTHESIS BY CHEMIOSMOTIC COUPLING AND HEAT PRODUCTION BY UNCOUPLING PROTEINS	Genes involved in Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
0.2	16.5	REACTOME MITOTIC PROMETAPHASE	Genes involved in Mitotic Prometaphase
0.7	16.0	REACTOME MITOCHONDRIAL TRNA AMINOACYLATION	Genes involved in Mitochondrial tRNA aminoacylation
1.0	12.6	REACTOME CDC6 ASSOCIATION WITH THE ORC ORIGIN COMPLEX	Genes involved in CDC6 association with the ORC:origin complex
0.1	11.6	REACTOME TRANSLATION	Genes involved in Translation
0.3	11.2	REACTOME TRANSPORT OF RIBONUCLEOPROTEINS INTO THE HOST NUCLEUS	Genes involved in Transport of Ribonucleoproteins into the Host Nucleus
0.3	10.6	REACTOME RNA POL III TRANSCRIPTION INITIATION FROM TYPE 2 PROMOTER	Genes involved in RNA Polymerase III Transcription Initiation From Type 2 Promoter
0.1	10.2	REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX	Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.1	10.0	REACTOME MRNA SPLICING	Genes involved in mRNA Splicing
0.3	9.7	REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM	Genes involved in Transport of Mature Transcript to Cytoplasm

Showing 1 to 10 of 104 entries

Gene overrepresentation in biological_process category:

Search:

Show entries

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	39.9	GO:0070126	mitochondrial translational elongation(GO:0070125) mitochondrial translational termination(GO:0070126)
0.3	18.5	GO:0006120	mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.4	17.7	GO:0000083	regulation of transcription involved in G1/S transition of mitotic cell cycle(GO:0000083)
0.4	15.1	GO:0071431	tRNA export from nucleus(GO:0006409) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431)
0.3	15.0	GO:0043486	histone exchange(GO:0043486)
0.3	13.4	GO:0019985	translesion synthesis(GO:0019985)
0.1	12.1	GO:0006333	chromatin assembly or disassembly(GO:0006333)
0.9	12.0	GO:0070389	chaperone cofactor-dependent protein refolding(GO:0070389)
2.9	11.7	GO:0006432	phenylalanyl-tRNA aminoacylation(GO:0006432)
0.4	11.1	GO:0034453	microtubule anchoring(GO:0034453)

Showing 1 to 10 of 473 entries

Results for TAF1

Z-value: 3.88

Motif logo

Transcription factors associated with TAF1

Activity-expression correlation:

Activity profile of TAF1 motif

Sorted Z-values of TAF1 motif

Network of associatons between targets according to the STRING database.

First level regulatory network of TAF1

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.

Top targets:

Gene Ontology Analysis

Gene overrepresentation in C2:CP category:

Gene overrepresentation in cellular_component category:

Gene overrepresentation in molecular_function category:

Gene overrepresentation in C2:CP:REACTOME category:

Gene overrepresentation in biological_process category: