ENCODE cell lines, expression (Ernst 2011)

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Download the whole report

Name	miRBASE accession
hsa-miR-489-3p Links miRBase	MIMAT0002805

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Promoter	Score	Transcript	Gene	Gene Info
chrX_+_64887512	0.15	ENST00000360270.5	MSN	moesin
chr6_+_116601265	0.10	ENST00000452085.3	DSE	dermatan sulfate epimerase
chr10_+_11206925	0.07	ENST00000354440.2 ENST00000315874.4 ENST00000427450.1	CELF2	CUGBP, Elav-like family member 2
chr1_+_91966384	0.06	ENST00000430031.2 ENST00000234626.6	CDC7	cell division cycle 7
chr4_+_75858290	0.05	ENST00000513238.1	PARM1	prostate androgen-regulated mucin-like protein 1
chr8_-_122653630	0.04	ENST00000303924.4	HAS2	hyaluronan synthase 2
chr6_-_24911195	0.04	ENST00000259698.4	FAM65B	family with sequence similarity 65, member B
chr12_+_32112340	0.04	ENST00000540924.1 ENST00000312561.4	KIAA1551	KIAA1551
chr18_+_21693306	0.04	ENST00000540918.2	TTC39C	tetratricopeptide repeat domain 39C
chr6_-_39197226	0.04	ENST00000359534.3	KCNK5	potassium channel, subfamily K, member 5
chr1_+_26798955	0.04	ENST00000361427.5	HMGN2	high mobility group nucleosomal binding domain 2
chr3_-_114790179	0.03	ENST00000462705.1	ZBTB20	zinc finger and BTB domain containing 20
chr5_-_107006596	0.03	ENST00000333274.6	EFNA5	ephrin-A5
chr6_-_139695757	0.03	ENST00000367651.2	CITED2	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2
chr1_+_206808918	0.03	ENST00000367108.3	DYRK3	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3
chr8_-_77912431	0.03	ENST00000357039.4 ENST00000522527.1	PEX2	peroxisomal biogenesis factor 2
chr9_+_82186872	0.03	ENST00000376544.3 ENST00000376520.4	TLE4	transducin-like enhancer of split 4 (E(sp1) homolog, Drosophila)
chr15_+_59279851	0.03	ENST00000348370.4 ENST00000434298.1 ENST00000559160.1	RNF111	ring finger protein 111
chr14_-_37642016	0.03	ENST00000331299.5	SLC25A21	solute carrier family 25 (mitochondrial oxoadipate carrier), member 21
chr7_-_19157248	0.03	ENST00000242261.5	TWIST1	twist family bHLH transcription factor 1
chr6_-_100912785	0.03	ENST00000369208.3	SIM1	single-minded family bHLH transcription factor 1
chr3_-_113465065	0.03	ENST00000497255.1 ENST00000478020.1 ENST00000240922.3 ENST00000493900.1	NAA50	N(alpha)-acetyltransferase 50, NatE catalytic subunit
chr1_+_101702417	0.03	ENST00000305352.6	S1PR1	sphingosine-1-phosphate receptor 1
chr2_-_100939195	0.03	ENST00000393437.3	LONRF2	LON peptidase N-terminal domain and ring finger 2
chr4_-_111544254	0.03	ENST00000306732.3	PITX2	paired-like homeodomain 2
chr11_-_130786400	0.03	ENST00000265909.4	SNX19	sorting nexin 19
chr1_-_244013384	0.03	ENST00000366539.1	AKT3	v-akt murine thymoma viral oncogene homolog 3
chr1_+_193091080	0.03	ENST00000367435.3	CDC73	cell division cycle 73
chr4_-_120988229	0.03	ENST00000296509.6	MAD2L1	MAD2 mitotic arrest deficient-like 1 (yeast)
chr19_-_46476791	0.02	ENST00000263257.5	NOVA2	neuro-oncological ventral antigen 2
chr1_+_28995231	0.02	ENST00000373816.1	GMEB1	glucocorticoid modulatory element binding protein 1
chr11_+_126173647	0.02	ENST00000263579.4	DCPS	decapping enzyme, scavenger
chrX_-_118986911	0.02	ENST00000276201.2 ENST00000345865.2	UPF3B	UPF3 regulator of nonsense transcripts homolog B (yeast)
chr1_+_46668994	0.02	ENST00000371980.3	LURAP1	leucine rich adaptor protein 1
chr9_+_91003271	0.02	ENST00000375859.3 ENST00000541629.1	SPIN1	spindlin 1
chr3_+_58291965	0.02	ENST00000445193.3 ENST00000295959.5 ENST00000466547.1	RPP14	ribonuclease P/MRP 14kDa subunit
chr12_-_54673871	0.02	ENST00000209875.4	CBX5	chromobox homolog 5
chr1_-_70671216	0.02	ENST00000370952.3	LRRC40	leucine rich repeat containing 40
chr8_+_30891298	0.02	ENST00000298139.5	WRN	Werner syndrome, RecQ helicase-like
chrX_-_124097620	0.02	ENST00000371130.3 ENST00000422452.2	TENM1	teneurin transmembrane protein 1
chr3_-_182698381	0.02	ENST00000292782.4	DCUN1D1	DCN1, defective in cullin neddylation 1, domain containing 1
chr6_-_13711773	0.02	ENST00000011619.3	RANBP9	RAN binding protein 9
chr10_+_112679301	0.02	ENST00000265277.5 ENST00000369452.4	SHOC2	soc-2 suppressor of clear homolog (C. elegans)
chr8_-_89339705	0.02	ENST00000286614.6	MMP16	matrix metallopeptidase 16 (membrane-inserted)
chr3_+_45636219	0.02	ENST00000273317.4	LIMD1	LIM domains containing 1
chr12_-_102513843	0.02	ENST00000551744.2 ENST00000552283.1	NUP37	nucleoporin 37kDa
chr1_-_161147275	0.02	ENST00000319769.5 ENST00000367998.1	B4GALT3	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 3
chr2_-_38978492	0.01	ENST00000409276.1 ENST00000446327.2 ENST00000313117.6	SRSF7	serine/arginine-rich splicing factor 7
chr11_-_31839488	0.01	ENST00000419022.1 ENST00000379132.3 ENST00000379129.2	PAX6	paired box 6
chr12_-_29534074	0.01	ENST00000546839.1 ENST00000360150.4 ENST00000552155.1 ENST00000550353.1 ENST00000548441.1 ENST00000552132.1	ERGIC2	ERGIC and golgi 2
chr14_+_70078303	0.01	ENST00000342745.4	KIAA0247	KIAA0247
chr8_+_28351707	0.01	ENST00000537916.1 ENST00000523546.1 ENST00000240093.3	FZD3	frizzled family receptor 3
chr1_-_84464780	0.01	ENST00000260505.8	TTLL7	tubulin tyrosine ligase-like family, member 7
chr10_+_98741041	0.01	ENST00000286067.2	C10orf12	chromosome 10 open reading frame 12
chr16_-_62070305	0.01	ENST00000584337.1	CDH8	cadherin 8, type 2
chr2_-_172017343	0.01	ENST00000431350.2 ENST00000360843.3	TLK1	tousled-like kinase 1
chr1_+_65730385	0.01	ENST00000263441.7 ENST00000395325.3	DNAJC6	DnaJ (Hsp40) homolog, subfamily C, member 6
chr1_-_213189108	0.01	ENST00000535388.1	ANGEL2	angel homolog 2 (Drosophila)
chr15_+_68570062	0.01	ENST00000306917.4	FEM1B	fem-1 homolog b (C. elegans)
chr1_-_22109682	0.01	ENST00000400301.1 ENST00000532737.1	USP48	ubiquitin specific peptidase 48
chr10_-_27443155	0.01	ENST00000427324.1 ENST00000326799.3	YME1L1	YME1-like 1 ATPase
chr12_-_56583332	0.01	ENST00000347471.4 ENST00000267064.4 ENST00000394023.3	SMARCC2	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2
chr12_+_60083118	0.01	ENST00000261187.4 ENST00000543448.1	SLC16A7	solute carrier family 16 (monocarboxylate transporter), member 7
chr14_+_57046500	0.01	ENST00000261556.6	TMEM260	transmembrane protein 260
chr5_+_138629417	0.01	ENST00000510056.1 ENST00000511249.1 ENST00000503811.1 ENST00000511378.1	MATR3	matrin 3
chr9_-_6015607	0.01	ENST00000259569.5	RANBP6	RAN binding protein 6
chr13_-_77900814	0.01	ENST00000544440.2	MYCBP2	MYC binding protein 2, E3 ubiquitin protein ligase
chr9_+_77112244	0.01	ENST00000376896.3	RORB	RAR-related orphan receptor B
chr10_-_94003003	0.01	ENST00000412050.4	CPEB3	cytoplasmic polyadenylation element binding protein 3
chr12_+_54943134	0.01	ENST00000243052.3	PDE1B	phosphodiesterase 1B, calmodulin-dependent
chr4_-_53525406	0.01	ENST00000451218.2 ENST00000441222.3	USP46	ubiquitin specific peptidase 46
chr14_+_90863327	0.01	ENST00000356978.4	CALM1	calmodulin 1 (phosphorylase kinase, delta)
chr7_+_31092076	0.01	ENST00000304166.4	ADCYAP1R1	adenylate cyclase activating polypeptide 1 (pituitary) receptor type I
chr15_-_49447835	0.01	ENST00000388901.5 ENST00000299259.6	COPS2	COP9 signalosome subunit 2
chr8_-_72987810	0.01	ENST00000262209.4	TRPA1	transient receptor potential cation channel, subfamily A, member 1
chr11_-_106889250	0.01	ENST00000526355.2	GUCY1A2	guanylate cyclase 1, soluble, alpha 2
chr20_+_49348081	0.01	ENST00000371610.2	PARD6B	par-6 family cell polarity regulator beta
chr11_+_105480793	0.01	ENST00000282499.5 ENST00000393127.2 ENST00000527669.1	GRIA4	glutamate receptor, ionotropic, AMPA 4
chr18_+_49866496	0.01	ENST00000442544.2	DCC	deleted in colorectal carcinoma
chr2_+_176972000	0.01	ENST00000249504.5	HOXD11	homeobox D11
chr2_+_166326157	0.01	ENST00000421875.1 ENST00000314499.7 ENST00000409664.1	CSRNP3	cysteine-serine-rich nuclear protein 3
chr3_-_178790057	0.01	ENST00000311417.2	ZMAT3	zinc finger, matrin-type 3
chr1_+_111991474	0.01	ENST00000369722.3	ATP5F1	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1
chr3_-_72496035	0.01	ENST00000477973.2	RYBP	RING1 and YY1 binding protein
chr17_-_36981556	0.01	ENST00000536127.1 ENST00000225428.5	CWC25	CWC25 spliceosome-associated protein homolog (S. cerevisiae)
chr6_+_35995488	0.01	ENST00000229795.3	MAPK14	mitogen-activated protein kinase 14
chr4_-_153457197	0.01	ENST00000281708.4	FBXW7	F-box and WD repeat domain containing 7, E3 ubiquitin protein ligase
chr3_+_150126101	0.01	ENST00000361875.3 ENST00000361136.2	TSC22D2	TSC22 domain family, member 2
chr15_-_56757329	0.01	ENST00000260453.3	MNS1	meiosis-specific nuclear structural 1
chr11_-_132813566	0.01	ENST00000331898.7	OPCML	opioid binding protein/cell adhesion molecule-like
chr2_-_65357225	0.01	ENST00000398529.3 ENST00000409751.1 ENST00000356214.7 ENST00000409892.1 ENST00000409784.3	RAB1A	RAB1A, member RAS oncogene family
chr3_+_29322803	0.01	ENST00000396583.3 ENST00000383767.2	RBMS3	RNA binding motif, single stranded interacting protein 3
chr1_+_50574585	0.01	ENST00000371824.1 ENST00000371823.4	ELAVL4	ELAV like neuron-specific RNA binding protein 4
chr5_+_140560980	0.01	ENST00000361016.2	PCDHB16	protocadherin beta 16
chr2_-_25475120	0.01	ENST00000380746.4 ENST00000402667.1	DNMT3A	DNA (cytosine-5-)-methyltransferase 3 alpha
chr12_+_74931551	0.00	ENST00000519948.2	ATXN7L3B	ataxin 7-like 3B
chr14_+_79745746	0.00	ENST00000281127.7	NRXN3	neurexin 3
chr1_-_114355083	0.00	ENST00000261441.5	RSBN1	round spermatid basic protein 1
chr16_+_50187556	0.00	ENST00000561678.1 ENST00000357464.3	PAPD5	PAP associated domain containing 5
chr5_-_168728103	0.00	ENST00000519560.1	SLIT3	slit homolog 3 (Drosophila)
chr6_+_163148161	0.00	ENST00000337019.3 ENST00000366889.2	PACRG	PARK2 co-regulated
chr17_+_54911444	0.00	ENST00000284061.3 ENST00000572810.1	DGKE	diacylglycerol kinase, epsilon 64kDa
chr18_+_9913977	0.00	ENST00000400000.2 ENST00000340541.4	VAPA	VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa
chr3_+_121311966	0.00	ENST00000338040.4	FBXO40	F-box protein 40
chr2_+_166095898	0.00	ENST00000424833.1 ENST00000375437.2 ENST00000357398.3	SCN2A	sodium channel, voltage-gated, type II, alpha subunit
chr20_-_9819479	0.00	ENST00000378423.1 ENST00000353224.5	PAK7	p21 protein (Cdc42/Rac)-activated kinase 7
chr9_+_77703414	0.00	ENST00000346234.6	OSTF1	osteoclast stimulating factor 1
chr3_+_145782358	0.00	ENST00000422482.1	AC107021.1	HCG1786590; PRO2533; Uncharacterized protein
chrX_+_122993827	0.00	ENST00000371199.3	XIAP	X-linked inhibitor of apoptosis
chr15_-_61521495	0.00	ENST00000335670.6	RORA	RAR-related orphan receptor A
chr16_-_2264779	0.00	ENST00000333503.7	PGP	phosphoglycolate phosphatase
chr4_-_103748880	0.00	ENST00000453744.2 ENST00000349311.8	UBE2D3	ubiquitin-conjugating enzyme E2D 3
chr17_+_45608430	0.00	ENST00000322157.4	NPEPPS	aminopeptidase puromycin sensitive
chr19_-_18314836	0.00	ENST00000464076.3 ENST00000222256.4	RAB3A	RAB3A, member RAS oncogene family
chr20_+_10199468	0.00	ENST00000254976.2 ENST00000304886.2	SNAP25	synaptosomal-associated protein, 25kDa
chr7_-_138666053	0.00	ENST00000440172.1 ENST00000422774.1	KIAA1549	KIAA1549
chr16_-_21663950	0.00	ENST00000268389.4	IGSF6	immunoglobulin superfamily, member 6
chr4_+_160188889	0.00	ENST00000264431.4	RAPGEF2	Rap guanine nucleotide exchange factor (GEF) 2

Gene overrepresentation in molecular_function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0047757	chondroitin-glucuronate 5-epimerase activity(GO:0047757)
0.0	0.0	GO:0050501	hyaluronan synthase activity(GO:0050501)
0.0	0.0	GO:0005169	neurotrophin TRKB receptor binding(GO:0005169)
0.0	0.0	GO:0032184	SUMO polymer binding(GO:0032184)

Gene overrepresentation in biological_process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0022614	membrane to membrane docking(GO:0022614)
0.0	0.0	GO:2000276	negative regulation of peroxisome proliferator activated receptor signaling pathway(GO:0035359) negative regulation of oxidative phosphorylation uncoupler activity(GO:2000276)