ENCODE cell lines, expression (Ernst 2011)
Promoter | Score | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr3_+_157154578 | 10.65 |
ENST00000295927.3 |
PTX3 |
pentraxin 3, long |
chr1_-_156647189 | 9.52 |
ENST00000368223.3 |
NES |
nestin |
chr2_-_190044480 | 7.76 |
ENST00000374866.3 |
COL5A2 |
collagen, type V, alpha 2 |
chr16_+_31483451 | 6.22 |
ENST00000565360.1 ENST00000361773.3 |
TGFB1I1 |
transforming growth factor beta 1 induced transcript 1 |
chr19_+_41725088 | 5.97 |
ENST00000301178.4 |
AXL |
AXL receptor tyrosine kinase |
chr11_-_89224508 | 5.56 |
ENST00000525196.1 |
NOX4 |
NADPH oxidase 4 |
chr16_+_31483374 | 5.44 |
ENST00000394863.3 |
TGFB1I1 |
transforming growth factor beta 1 induced transcript 1 |
chr8_-_23261589 | 5.29 |
ENST00000524168.1 ENST00000523833.2 ENST00000519243.1 ENST00000389131.3 |
LOXL2 |
lysyl oxidase-like 2 |
chr5_-_54281407 | 5.20 |
ENST00000381403.4 |
ESM1 |
endothelial cell-specific molecule 1 |
chr11_-_89224638 | 5.18 |
ENST00000535633.1 ENST00000263317.4 |
NOX4 |
NADPH oxidase 4 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 6.8 | REACTOME COLLAGEN FORMATION | Genes involved in Collagen formation |
0.2 | 5.4 | REACTOME POST TRANSLATIONAL MODIFICATION SYNTHESIS OF GPI ANCHORED PROTEINS | Genes involved in Post-translational modification: synthesis of GPI-anchored proteins |
0.1 | 4.1 | REACTOME FORMATION OF FIBRIN CLOT CLOTTING CASCADE | Genes involved in Formation of Fibrin Clot (Clotting Cascade) |
0.3 | 3.8 | REACTOME SYNTHESIS OF PIPS AT THE EARLY ENDOSOME MEMBRANE | Genes involved in Synthesis of PIPs at the early endosome membrane |
0.1 | 3.8 | REACTOME EXTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Extrinsic Pathway for Apoptosis |
0.0 | 3.4 | REACTOME AMYLOIDS | Genes involved in Amyloids |
0.1 | 3.0 | REACTOME NETRIN1 SIGNALING | Genes involved in Netrin-1 signaling |
0.2 | 2.8 | REACTOME TRAFFICKING AND PROCESSING OF ENDOSOMAL TLR | Genes involved in Trafficking and processing of endosomal TLR |
0.0 | 2.8 | REACTOME SMOOTH MUSCLE CONTRACTION | Genes involved in Smooth Muscle Contraction |
0.0 | 2.4 | REACTOME INTERFERON GAMMA SIGNALING | Genes involved in Interferon gamma signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 28.0 | GO:0043020 | NADPH oxidase complex(GO:0043020) |
0.0 | 17.1 | GO:0005925 | focal adhesion(GO:0005925) |
0.1 | 11.2 | GO:0005882 | intermediate filament(GO:0005882) |
0.1 | 10.4 | GO:1904724 | tertiary granule lumen(GO:1904724) |
0.1 | 8.7 | GO:0016363 | nuclear matrix(GO:0016363) |
0.6 | 8.3 | GO:0033643 | host cell part(GO:0033643) |
0.1 | 8.1 | GO:0005604 | basement membrane(GO:0005604) |
2.6 | 7.8 | GO:0005588 | collagen type V trimer(GO:0005588) |
0.4 | 6.2 | GO:0097512 | cardiac myofibril(GO:0097512) |
0.5 | 5.5 | GO:0005614 | interstitial matrix(GO:0005614) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 28.0 | PID PTP1B PATHWAY | Signaling events mediated by PTP1B |
0.1 | 18.5 | NABA ECM REGULATORS | Genes encoding enzymes and their regulators involved in the remodeling of the extracellular matrix |
0.3 | 15.1 | PID INTEGRIN2 PATHWAY | Beta2 integrin cell surface interactions |
0.2 | 10.0 | ST MYOCYTE AD PATHWAY | Myocyte Adrenergic Pathway is a specific case of the generalized Adrenergic Pathway. |
0.1 | 8.2 | PID AR PATHWAY | Coregulation of Androgen receptor activity |
0.2 | 7.1 | PID INTEGRIN A9B1 PATHWAY | Alpha9 beta1 integrin signaling events |
0.1 | 6.8 | NABA COLLAGENS | Genes encoding collagen proteins |
0.1 | 5.2 | NABA PROTEOGLYCANS | Genes encoding proteoglycans |
0.1 | 4.2 | PID SYNDECAN 4 PATHWAY | Syndecan-4-mediated signaling events |
0.1 | 3.7 | PID ILK PATHWAY | Integrin-linked kinase signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 28.0 | GO:0050667 | homocysteine metabolic process(GO:0050667) |
1.5 | 11.7 | GO:0030579 | ubiquitin-dependent SMAD protein catabolic process(GO:0030579) |
2.1 | 10.6 | GO:0052199 | negative regulation of catalytic activity in other organism involved in symbiotic interaction(GO:0052199) |
0.4 | 9.5 | GO:1901881 | positive regulation of protein depolymerization(GO:1901881) |
1.4 | 8.3 | GO:0048549 | positive regulation of pinocytosis(GO:0048549) |
0.2 | 8.0 | GO:0045747 | positive regulation of Notch signaling pathway(GO:0045747) |
1.9 | 7.8 | GO:1903224 | regulation of endodermal cell differentiation(GO:1903224) |
0.0 | 7.1 | GO:0006260 | DNA replication(GO:0006260) |
1.1 | 6.7 | GO:0061343 | cell adhesion involved in heart morphogenesis(GO:0061343) |
0.3 | 6.2 | GO:0007021 | tubulin complex assembly(GO:0007021) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.8 | 28.0 | GO:0019826 | oxygen sensor activity(GO:0019826) |
1.3 | 11.7 | GO:0048495 | Roundabout binding(GO:0048495) |
1.3 | 10.6 | GO:0001849 | complement component C1q binding(GO:0001849) |
0.6 | 9.5 | GO:0019215 | intermediate filament binding(GO:0019215) |
0.0 | 8.5 | GO:0008201 | heparin binding(GO:0008201) |
0.5 | 8.3 | GO:0032036 | myosin heavy chain binding(GO:0032036) |
0.4 | 6.7 | GO:0045499 | chemorepellent activity(GO:0045499) |
0.1 | 6.6 | GO:0005201 | extracellular matrix structural constituent(GO:0005201) |
0.2 | 5.6 | GO:0005212 | structural constituent of eye lens(GO:0005212) |
1.8 | 5.4 | GO:0030377 | urokinase plasminogen activator receptor activity(GO:0030377) |