ISMARA results: Mesenchymal

Sample name: Mesenchymal

Sorted Z-values histogram for the sample Mesenchymal

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
MAFB.p2	3.917	MAFB
AACACUG	3.517
UUGGUCC	2.788
AACAGUC	2.640
GGAAGAC	2.271
AGUGCAA	2.027
NFY{A,B,C}.p2	1.988	NFYC NFYB NFYA
AAGGUGC	1.969
NHLH1,2.p2	1.842	NHLH1 NHLH2
NRF1.p2	1.831	NRF1
GCAGCAU	1.715
TFAP4.p2	1.670	TFAP4
ATF6.p2	1.573	ATF6
PAX2.p2	1.544	PAX2
UCACAGU	1.543
ZNF384.p2	1.504	ZNF384
XBP1.p3	1.489	XBP1
GGAAUGU	1.475
MSX1,2.p2	1.400	MSX1 MSX2
AAUACUG	1.375
RXRG_dimer.p3	1.348	NR1H2 RXRA PPARG PPARA RXRB RXRG
RXR{A,B,G}.p2	1.322	RXRA RXRB RXRG
IKZF2.p2	1.274	IKZF2
AGCACCA	1.209
UUUUUGC	1.203
UAAGACG	1.193
MYBL2.p2	1.104	MYBL2
UAAGACU	1.084
TGIF1.p2	1.081	TGIF1
ELK1,4_GABP{A,B1}.p3	1.056	GABPA GABPB1 ELK4 ELK1	$logo of ELK1,4_GABP{A,B1}.p3$
AUUGCAC	1.017
ADNP_IRX_SIX_ZHX.p2	1.015	SIX5 ZHX1 IRX4 ADNP ZHX3 ZHX2 IRX5 SIX2
UCCCUUU	0.972
GFI1.p2	0.963	GFI1
GUAGUGU	0.901
SRF.p3	0.888	SRF
TFEB.p2	0.888	TFEB
ZNF143.p2	0.843	ZNF143
EGR1..3.p2	0.836	EGR3 EGR1 EGR2
SREBF1,2.p2	0.836	SREBF1 SREBF2
RFX1..5_RFXANK_RFXAP.p2	0.829	RFX1 RFXAP RFX5 RFXANK RFX4 RFX3 RFX2
GATA1..3.p2	0.829	GATA1 GATA2 GATA3
PRRX1,2.p2	0.828	PRRX2 PRRX1
PRDM1.p3	0.827	PRDM1
LHX3,4.p2	0.799	LHX3 LHX4
STAT5{A,B}.p2	0.785	STAT5B STAT5A
GAGAACU	0.769
NKX2-2,8.p2	0.735	NKX2-2 NKX2-8
DBP.p2	0.719	DBP
NFATC1..3.p2	0.715	NFATC3 NFATC2 NFATC1
HBP1_HMGB_SSRP1_UBTF.p2	0.705	HMGB2 HMGB3 SSRP1 UBTF HBP1
RUNX1..3.p2	0.700	RUNX1 RUNX3 RUNX2
ZFP161.p2	0.699	ZFP161
FOXO1,3,4.p2	0.698	FOXO1 FOXO4 FOXO3
AIRE.p2	0.683	AIRE
AGGUAGU	0.679
STAT1,3.p3	0.625	STAT1 STAT3
ZIC1..3.p2	0.617	ZIC1 ZIC2 ZIC3
CCUUCAU	0.612
UUGUUCG	0.592
MZF1.p2	0.591	MZF1
FOXN1.p2	0.582	FOXN1
SP1.p2	0.582	SP1
CDX1,2,4.p2	0.571	CDX1 CDX2 CDX4
CGUGUCU	0.518
PBX1.p2	0.513	PBX1
AACGGAA	0.509
UGAAAUG	0.504
ONECUT1,2.p2	0.473	ONECUT2 ONECUT1
UGACCUA	0.459
CUX2.p2	0.418	CUX2
ACAUUCA	0.414
CCAGUGU	0.411
ZNF423.p2	0.408	ZNF423
FOX{C1,C2}.p2	0.405	FOXC1 FOXC2
TAL1_TCF{3,4,12}.p2	0.402	TCF3 TCF4 TAL1 TCF12	$logo of TAL1_TCF{3,4,12}.p2$
NFE2L2.p2	0.397	NFE2L2
AUGACAC	0.393
CUCCCAA	0.386
ESR1.p2	0.372	ESR1
TEAD1.p2	0.364	TEAD1 TEAD2 TEAD3 TEAD4
UCACAUU	0.345
DMAP1_NCOR{1,2}_SMARC.p2	0.337	SMARCA1 SMARCC2 SMARCA5 NCOR1 NCOR2 DMAP1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
POU1F1.p2	0.329	POU1F1
SOX5.p2	0.327	SOX5
NFIL3.p2	0.326	NFIL3
CREB1.p2	0.323	CREB1
CUACAGU	0.319
AGUGGUU	0.299
UGCAUUG	0.293
CACAGUG	0.292
GZF1.p2	0.280	GZF1
GAUUGUC	0.271
YY1.p2	0.268	YY1
UCCAGUU	0.265
GGCAAGA	0.265
JUN.p2	0.259	JUN JUND JUNB
ACUGGCC	0.250
ZNF148.p2	0.249	ZNF148
IRF1,2,7.p3	0.242	IRF1 IRF2 IRF7
UUGGCAC	0.238
ZBTB16.p2	0.227	ZBTB16
NKX6-1,2.p2	0.223	NKX6-1 NKX6-2
NR1H4.p2	0.219	NR1H4
EHF.p2	0.216	EHF
MYB.p2	0.216	MYB
GTF2I.p2	0.210	GTF2I
FOXL1.p2	0.200	FOXL1
PAX4.p2	0.192	PAX4
UAUUGCU	0.184
HOX{A4,D4}.p2	0.181	HOXA4 HOXD4
TFDP1.p2	0.174	TFDP1
GUAAACA	0.173
UAAUGCU	0.171
KLF12.p2	0.169	KLF12
GUCAGUU	0.158
TBX4,5.p2	0.137	TBX5 TBX4
LMO2.p2	0.123	LMO2
GUGCAAA	0.100
TCF4_dimer.p2	0.099	TCF4
E2F1..5.p2	0.091	E2F4 E2F5 E2F2 E2F1 E2F3
MYOD1.p2	0.089	MYOD1
EOMES.p2	0.085	EOMES
STAT2,4,6.p2	0.084	STAT2 STAT4 STAT6
GAUCAGA	0.075
AUGGCAC	0.074
CTCF.p2	0.072	CTCF
PITX1..3.p2	0.072	PITX2 PITX3 PITX1
GTF2A1,2.p2	0.070	GTF2A1 GTF2A2
ELF1,2,4.p2	0.069	ELF2 ELF1 ELF4
GCUGGUG	0.063
UGUGCUU	0.053
ACUGCAU	0.050
RREB1.p2	0.032	RREB1
UUGGCAA	0.024
ACAGUAU	0.024
SOX17.p2	0.023	SOX17
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	0.010	ARNT MAX MYC USF1 BHLHB2 ARNT2
EVI1.p2	0.008	EVI1
UGUGCGU	0.005
NR3C1.p2	0.003	NR3C1
AAUCUCU	-0.011
NFE2.p2	-0.019	NFE2
EP300.p2	-0.022	EP300
NFIX.p2	-0.044	NFIX
AAUCUCA	-0.053
ACCCGUA	-0.055
FOX{D1,D2}.p2	-0.060	FOXD2 FOXD1
GCUACAU	-0.069
ATF2.p2	-0.074	ATF2
ACCCUGU	-0.080
HOX{A6,A7,B6,B7}.p2	-0.081	HOXB6 HOXA7 HOXB7 HOXA6
GGAGUGU	-0.081
KLF4.p3	-0.085	KLF4
RXRA_VDR{dimer}.p2	-0.087	VDR	$logo of RXRA_VDR{dimer}.p2$
CDC5L.p2	-0.089	CDC5L
AR.p2	-0.103	AR
NR5A1,2.p2	-0.104	NR5A1 NR5A2
AAUGCCC	-0.108
FOX{I1,J2}.p2	-0.120	FOXI1 FOXJ2
CAGUGCA	-0.129
PAX3,7.p2	-0.135	PAX7 PAX3
ATF5_CREB3.p2	-0.141	ATF5 CREB3
HOX{A5,B5}.p2	-0.152	HOXB5 HOXA5
AGCUUAU	-0.157
AUGUGCC	-0.162
MTF1.p2	-0.167	MTF1
SPZ1.p2	-0.174	SPZ1
PDX1.p2	-0.179	PDX1
GAGAUGA	-0.205
FOXD3.p2	-0.206	FOXD3
GGACGGA	-0.222
ALX1.p2	-0.224	ALX1
AACCUGG	-0.230
HES1.p2	-0.232	HES1
BACH2.p2	-0.240	BACH2
CGUACCG	-0.245
PAX8.p2	-0.249	PAX8
GAUAUGU	-0.249
GGCAGUG	-0.254
MYFfamily.p2	-0.258	MYOD1 MYF6 MYF5 MYOG
PAX5.p2	-0.261	PAX5
AAGGCAC	-0.264
ZNF238.p2	-0.265	ZNF238
NFE2L1.p2	-0.266	NFE2L1
LEF1_TCF7_TCF7L1,2.p2	-0.284	TCF7 TCF7L2 LEF1 TCF7L1
UCAAGUA	-0.287
TFAP2B.p2	-0.293	TFAP2B
GATA6.p2	-0.300	GATA6
TFCP2.p2	-0.302	TFCP2
PPARG.p2	-0.304	PPARG
POU5F1.p2	-0.307	POU5F1
SPI1.p2	-0.317	SPI1
PATZ1.p2	-0.334	PATZ1
POU5F1_SOX2{dimer}.p2	-0.337	POU5F1 SOX2	$logo of POU5F1_SOX2{dimer}.p2$
ESRRA.p2	-0.338	ESRRA
HOXA9_MEIS1.p2	-0.357	MEIS1 HOXA9
AHR_ARNT_ARNT2.p2	-0.367	ARNT AHR ARNT2
SPIB.p2	-0.370	SPIB
REST.p3	-0.374	REST
AACCGUU	-0.387
VSX1,2.p2	-0.409	VSX2 VSX1
HNF1A.p2	-0.422	HNF1A
CUUUGGU	-0.427
T.p2	-0.463	T
NR6A1.p2	-0.483	NR6A1
UGCAUAG	-0.490
SOX2.p2	-0.496	SOX2
NANOG{mouse}.p2	-0.514	NANOG
NKX2-3_NKX2-5.p2	-0.514	NKX2-5 NKX2-3
HSF1,2.p2	-0.551	HSF1 HSF2
AUGGCUU	-0.558
ACAGUAC	-0.561
POU3F1..4.p2	-0.566	POU3F1 POU3F3 POU3F2 POU3F4
TFAP2{A,C}.p2	-0.597	TFAP2C TFAP2A
NANOG.p2	-0.602	NANOG
GUAACAG	-0.634
POU6F1.p2	-0.635	POU6F1
EWSR1-FLI1.p2	-0.657	FLI1 EWSR1
GLI1..3.p2	-0.716	GLI1 GLI2 GLI3
FOXQ1.p2	-0.729	FOXQ1
CAGCAGG	-0.737
PAX6.p2	-0.781	PAX6
GAGGUAG	-0.791
BPTF.p2	-0.792	BPTF
AGCUGCC	-0.793
HMGA1,2.p2	-0.808	HMGA1 HMGA2
TP53.p2	-0.812	TP53
ATF4.p2	-0.839	ATF4
AAGUGCU	-0.875
TBP.p2	-0.883	TBP
RBPJ.p2	-0.915	RBPJ
TLX1..3_NFIC{dimer}.p2	-0.930	TLX1 TLX3	$logo of TLX1..3_NFIC{dimer}.p2$
FOSL2.p2	-0.942	FOSL2
GGCUCAG	-0.945
FOX{F1,F2,J1}.p2	-0.951	FOXF2 FOXJ1 FOXF1
CCAGCAU	-1.000
MAZ.p2	-1.008	MAZ
SOX{8,9,10}.p2	-1.013	SOX9 SOX8 SOX10
SRY.p2	-1.018	SRY
CRX.p2	-1.049	CRX
TLX2.p2	-1.086	TLX2
SMAD1..7,9.p2	-1.094	SMAD5 SMAD1 SMAD3 SMAD4 SMAD2 SMAD6 SMAD7 SMAD9
NKX3-1.p2	-1.126	NKX3-1
ZBTB6.p2	-1.134	ZBTB6
IKZF1.p2	-1.139	IKZF1
bHLH_family.p2	-1.175	ARNTL MITF MXI1 TFE3 CLOCK OLIG2 MXD4 HEY2 HEY1 HEYL MLXIPL HES6 MXD3 ARNTL2 ID1 MNT OLIG1 NPAS2
ARID5B.p2	-1.180	ARID5B
ETS1,2.p2	-1.192	ETS2 ETS1
FEV.p2	-1.196	FEV
AAAGUGC	-1.201
HIF1A.p2	-1.261	HIF1A
RORA.p2	-1.299	RORA
HIC1.p2	-1.328	HIC1
FOXA2.p3	-1.339	FOXA2
HLF.p2	-1.342	HLF
AGCAGCA	-1.364
HAND1,2.p2	-1.367	HAND1 HAND2
FOXP3.p2	-1.431	FOXP3
CEBPA,B_DDIT3.p2	-1.455	DDIT3 CEBPA CEBPB
NKX3-2.p2	-1.516	NKX3-2
NKX2-1,4.p2	-1.564	NKX2-1 NKX2-4
GFI1B.p2	-1.676	GFI1B
HMX1.p2	-1.698	HMX1
MEF2{A,B,C,D}.p2	-1.744	MEF2A MEF2C MEF2D MEF2BNB-MEF2B MEF2B
POU2F1..3.p2	-1.856	POU2F2 POU2F1 POU2F3
HNF4A_NR2F1,2.p2	-2.047	NR2F1 NR2F2 HNF4A
EN1,2.p2	-2.294	EN1 EN2
EBF1.p2	-2.301	EBF1
AGCAGCG	-2.695
NR4A2.p2	-3.013	NR4A2
FOS_FOS{B,L1}_JUN{B,D}.p2	-3.511	FOS JUNB FOSL1 JUND FOSB	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
NFKB1_REL_RELA.p2	-3.626	RELA REL NFKB1
ZEB1.p2	-3.743	ZEB1
CCCUGAG	-5.305
SNAI1..3.p2	-7.337	SNAI2 SNAI1 SNAI3

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Sample name: Mesenchymal

Sorted z-values for every WM.