avrg: A549 cells infected with RSV Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Sample | Condition |
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svRNA184-mock-1-indexF1_S13 | 02_mock_A549 |
svRNA184-mock-3-indexF3_S15 | 02_mock_A549 |
svRNA184-RSV-1-indexF4_S16 | 01_RSV_infected_A549 |
svRNA184-RSV-3-indexH9_S18 | 01_RSV_infected_A549 |
Motif name | Z-value | Associated genes | Profile | Logo |
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IRF2_STAT2_IRF8_IRF1 | 23.80 |
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IRF9 | 15.14 |
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IRF3 | 8.07 |
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IRF6_IRF4_IRF5 | 8.00 |
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HNF1A_HNF1B | 7.83 |
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E2F7_E2F1 | 5.23 |
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E2F2_E2F5 | 4.90 |
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YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ | 4.74 |
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HMGA1 | 4.70 |
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BATF | 4.47 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.