Motif ID: Hoxd9

Z-value: 0.676


Transcription factors associated with Hoxd9:

Gene SymbolEntrez IDGene Name
Hoxd9 ENSMUSG00000043342.8 Hoxd9



Activity profile for motif Hoxd9.

activity profile for motif Hoxd9


Sorted Z-values histogram for motif Hoxd9

Sorted Z-values for motif Hoxd9



Network of associatons between targets according to the STRING database.



First level regulatory network of Hoxd9

PNG image of the network

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Top targets:


Showing 1 to 20 of 86 entries
PromoterScoreRefseqGene SymbolGene Name
chr3_-_116129615 10.008 ENSMUST00000029574.8
 Vcam1
vascular cell adhesion molecule 1
chr4_+_136143497 9.069 ENSMUST00000008016.2
 Id3
inhibitor of DNA binding 3
chr18_-_78206408 7.969 ENSMUST00000163367.1
 Slc14a2
solute carrier family 14 (urea transporter), member 2
chr6_-_36811361 5.002 ENSMUST00000101534.1
 Ptn
pleiotrophin
chr17_-_32166879 4.588 ENSMUST00000087723.3
 Notch3
notch 3
chr15_-_37459327 4.521 ENSMUST00000119730.1
ENSMUST00000120746.1
 Ncald

neurocalcin delta

chrX_+_82948861 4.473 ENSMUST00000114000.1
 Dmd
dystrophin, muscular dystrophy
chr11_-_109472611 4.418 ENSMUST00000168740.1
 Slc16a6
solute carrier family 16 (monocarboxylic acid transporters), member 6
chr3_-_66296807 4.224 ENSMUST00000029419.7
 Veph1
ventricular zone expressed PH domain-containing 1
chr9_-_64172879 4.166 ENSMUST00000176299.1
ENSMUST00000130127.1
ENSMUST00000176794.1
ENSMUST00000177045.1
 Zwilch



zwilch kinetochore protein



chr19_+_23723279 4.064 ENSMUST00000067077.1
 Gm9938
predicted gene 9938
chr2_-_84425258 4.011 ENSMUST00000074262.2
 Calcrl
calcitonin receptor-like
chr7_+_67647405 3.963 ENSMUST00000032774.8
ENSMUST00000107471.1
 Ttc23

tetratricopeptide repeat domain 23

chr13_-_105271039 3.694 ENSMUST00000069686.6
 Rnf180
ring finger protein 180
chr12_+_38783503 3.630 ENSMUST00000159334.1
 Etv1
ets variant gene 1
chr1_+_167598450 3.490 ENSMUST00000111386.1
ENSMUST00000111384.1
 Rxrg

retinoid X receptor gamma

chr5_-_62766153 3.457 ENSMUST00000076623.4
 Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chrX_+_85048309 3.402 ENSMUST00000113991.1
ENSMUST00000113992.2
 Dmd

dystrophin, muscular dystrophy

chr1_-_163289214 3.376 ENSMUST00000183691.1
 Prrx1
paired related homeobox 1
chr7_+_66365905 3.139 ENSMUST00000107486.1
 Gm10974
predicted gene 10974

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Showing 1 to 20 of 40 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.9 10.0 GO:0061032 visceral serous pericardium development(GO:0061032)
0.3 9.1 GO:0071398 cellular response to fatty acid(GO:0071398)
1.1 8.0 GO:0015840 urea transport(GO:0015840) urea transmembrane transport(GO:0071918)
2.6 7.9 GO:0008065 establishment of blood-nerve barrier(GO:0008065) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
0.2 6.1 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
1.7 5.0 GO:1904395 regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904393) positive regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904395)
0.1 4.6 GO:0048844 artery morphogenesis(GO:0048844)
0.1 4.5 GO:0003073 regulation of systemic arterial blood pressure(GO:0003073)
0.2 4.4 GO:0035873 lactate transport(GO:0015727) lactate transmembrane transport(GO:0035873) plasma membrane lactate transport(GO:0035879)
0.0 4.2 GO:0007093 mitotic cell cycle checkpoint(GO:0007093)
1.0 4.0 GO:0034285 response to sucrose(GO:0009744) response to disaccharide(GO:0034285)
0.3 3.7 GO:0042415 norepinephrine metabolic process(GO:0042415)
0.3 3.4 GO:0048664 neuron fate determination(GO:0048664)
0.1 2.5 GO:0007638 mechanosensory behavior(GO:0007638)
0.3 2.4 GO:0060923 cardiac muscle cell fate commitment(GO:0060923)
0.3 2.3 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.0 2.3 GO:0071805 potassium ion transmembrane transport(GO:0071805)
0.7 2.2 GO:0036292 DNA rewinding(GO:0036292)
0.2 2.2 GO:0016127 cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127)
0.7 2.1 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)

Gene overrepresentation in cellular_component category:

Showing 1 to 20 of 22 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.0 15.6 GO:0005887 integral component of plasma membrane(GO:0005887)
0.4 10.0 GO:0002102 podosome(GO:0002102)
0.5 8.9 GO:0016010 dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665)
0.1 5.1 GO:0031594 neuromuscular junction(GO:0031594)
1.4 4.2 GO:1990423 RZZ complex(GO:1990423)
0.0 3.7 GO:0031227 intrinsic component of endoplasmic reticulum membrane(GO:0031227)
0.0 2.5 GO:0005902 microvillus(GO:0005902)
0.0 2.3 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.1 2.1 GO:0016327 apicolateral plasma membrane(GO:0016327)
0.2 2.0 GO:0033269 internode region of axon(GO:0033269)
0.1 1.7 GO:0098643 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.0 1.7 GO:0043596 nuclear replication fork(GO:0043596)
0.1 1.5 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 1.3 GO:0070469 respiratory chain(GO:0070469)
0.0 0.7 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.1 0.6 GO:0000120 RNA polymerase I transcription factor complex(GO:0000120)
0.1 0.6 GO:0048787 presynaptic active zone membrane(GO:0048787)
0.0 0.6 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.6 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.4 GO:0017119 Golgi transport complex(GO:0017119)

Gene overrepresentation in molecular_function category:

Showing 1 to 20 of 33 entries
Log-likelihood per target Total log-likelihoodTermDescription
2.5 10.0 GO:0008131 primary amine oxidase activity(GO:0008131)
0.2 9.1 GO:0005504 fatty acid binding(GO:0005504)
1.3 8.0 GO:0015265 urea channel activity(GO:0015265)
0.5 7.9 GO:0017166 dystroglycan binding(GO:0002162) vinculin binding(GO:0017166)
0.6 6.1 GO:0004886 9-cis retinoic acid receptor activity(GO:0004886)
0.1 5.5 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
1.7 5.0 GO:0035373 chondroitin sulfate proteoglycan binding(GO:0035373)
0.1 4.5 GO:0043014 alpha-tubulin binding(GO:0043014)
0.3 4.4 GO:0015129 lactate transmembrane transporter activity(GO:0015129)
1.0 4.0 GO:0097642 calcitonin family receptor activity(GO:0097642)
0.1 3.7 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)
0.2 3.4 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.1 3.4 GO:0071837 HMG box domain binding(GO:0071837)
0.3 2.3 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.4 2.2 GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854)
0.2 2.2 GO:0036310 annealing helicase activity(GO:0036310)
0.1 2.1 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.3 2.0 GO:0008321 Ral guanyl-nucleotide exchange factor activity(GO:0008321)
0.0 2.0 GO:0051015 actin filament binding(GO:0051015)
0.1 1.9 GO:0043422 protein kinase B binding(GO:0043422)