Motif ID: Smad4

Z-value: 1.387


Transcription factors associated with Smad4:

Gene SymbolEntrez IDGene Name
Smad4 ENSMUSG00000024515.7 Smad4

Activity-expression correlation:

Gene SymbolPromoterPearson corr. coef.P-valuePlot
Smad4mm10_v2_chr18_-_73703739_737038060.132.9e-01Click!


Activity profile for motif Smad4.

activity profile for motif Smad4


Sorted Z-values histogram for motif Smad4

Sorted Z-values for motif Smad4



Network of associatons between targets according to the STRING database.



First level regulatory network of Smad4

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr12_+_103314944 19.489 ENSMUST00000179363.1
Fam181a
family with sequence similarity 181, member A
chr10_-_42583628 18.572 ENSMUST00000019938.4
Nr2e1
nuclear receptor subfamily 2, group E, member 1
chr2_+_70562854 14.229 ENSMUST00000130998.1
Gad1
glutamate decarboxylase 1
chr2_+_70563435 13.675 ENSMUST00000123330.1
Gad1
glutamate decarboxylase 1
chr18_+_57133065 13.447 ENSMUST00000075770.6
Megf10
multiple EGF-like-domains 10
chr4_-_117178726 12.985 ENSMUST00000153953.1
ENSMUST00000106436.1
Kif2c

kinesin family member 2C

chr14_+_50944499 12.629 ENSMUST00000178092.1
Pnp
purine-nucleoside phosphorylase
chr7_+_45216671 12.531 ENSMUST00000134420.1
Tead2
TEA domain family member 2
chr14_-_54577578 12.434 ENSMUST00000054487.8
Ajuba
ajuba LIM protein
chr7_+_45215753 9.744 ENSMUST00000033060.6
ENSMUST00000155313.1
ENSMUST00000107801.1
Tead2


TEA domain family member 2


chr3_+_89436699 9.680 ENSMUST00000038942.3
ENSMUST00000130858.1
Pbxip1

pre B cell leukemia transcription factor interacting protein 1

chr19_-_40271506 9.380 ENSMUST00000068439.6
Pdlim1
PDZ and LIM domain 1 (elfin)
chr11_-_89302545 8.371 ENSMUST00000061728.3
Nog
noggin
chr17_+_75178797 8.353 ENSMUST00000112516.1
ENSMUST00000135447.1
Ltbp1

latent transforming growth factor beta binding protein 1

chr7_-_89517576 8.263 ENSMUST00000041761.5
Prss23
protease, serine, 23
chr3_+_89436736 8.172 ENSMUST00000146630.1
ENSMUST00000145753.1
Pbxip1

pre B cell leukemia transcription factor interacting protein 1

chr17_-_70851710 7.942 ENSMUST00000166395.2
Tgif1
TGFB-induced factor homeobox 1
chr7_+_110221697 7.662 ENSMUST00000033325.7
Swap70
SWA-70 protein
chr6_+_15720654 7.652 ENSMUST00000101663.3
Mdfic
MyoD family inhibitor domain containing
chr5_+_92683625 7.648 ENSMUST00000168878.1
Shroom3
shroom family member 3
chr19_+_5740885 7.600 ENSMUST00000081496.5
Ltbp3
latent transforming growth factor beta binding protein 3
chr17_+_75178911 7.547 ENSMUST00000112514.1
Ltbp1
latent transforming growth factor beta binding protein 1
chr11_-_5261558 7.148 ENSMUST00000020662.8
Kremen1
kringle containing transmembrane protein 1
chr13_-_21832194 7.067 ENSMUST00000102979.1
Hist1h4n
histone cluster 1, H4n
chr14_-_57826128 6.973 ENSMUST00000022536.2
Ska3
spindle and kinetochore associated complex subunit 3
chr2_+_152736244 6.855 ENSMUST00000038368.8
ENSMUST00000109824.1
Id1

inhibitor of DNA binding 1

chr7_+_117380937 6.710 ENSMUST00000032892.5
Xylt1
xylosyltransferase 1
chr7_+_101394361 6.655 ENSMUST00000154239.1
ENSMUST00000098243.2
Arap1

ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1

chr15_-_103366763 6.559 ENSMUST00000023128.6
Itga5
integrin alpha 5 (fibronectin receptor alpha)
chr2_+_27676440 6.345 ENSMUST00000129514.1
Rxra
retinoid X receptor alpha
chr10_-_92164666 6.281 ENSMUST00000183123.1
ENSMUST00000182033.1
Rmst

rhabdomyosarcoma 2 associated transcript (non-coding RNA)

chr11_-_3931960 6.270 ENSMUST00000109990.1
ENSMUST00000020710.4
ENSMUST00000109989.3
ENSMUST00000109991.1
ENSMUST00000109993.2
Tcn2




transcobalamin 2




chr4_-_95052170 5.708 ENSMUST00000058555.2
Jun
Jun oncogene
chr11_-_3931789 5.677 ENSMUST00000109992.1
ENSMUST00000109988.1
Tcn2

transcobalamin 2

chr14_-_25903100 5.643 ENSMUST00000052286.8
Plac9a
placenta specific 9a
chr1_+_187997821 5.072 ENSMUST00000027906.6
Esrrg
estrogen-related receptor gamma
chr7_-_70360593 5.026 ENSMUST00000032768.7
Nr2f2
nuclear receptor subfamily 2, group F, member 2
chr3_+_127633134 5.018 ENSMUST00000029587.7
Neurog2
neurogenin 2
chr9_-_21852603 5.015 ENSMUST00000034728.7
Dock6
dedicator of cytokinesis 6
chr1_+_187997835 5.002 ENSMUST00000110938.1
Esrrg
estrogen-related receptor gamma
chr13_+_23581563 4.994 ENSMUST00000102968.1
Hist1h4d
histone cluster 1, H4d
chr10_-_127534540 4.983 ENSMUST00000095266.2
Nxph4
neurexophilin 4
chr18_-_84086379 4.937 ENSMUST00000060303.8
Tshz1
teashirt zinc finger family member 1
chr14_+_12189943 4.749 ENSMUST00000119888.1
Ptprg
protein tyrosine phosphatase, receptor type, G
chr13_-_23551648 4.443 ENSMUST00000102971.1
Hist1h4f
histone cluster 1, H4f
chr4_+_130055010 4.341 ENSMUST00000123617.1
Col16a1
collagen, type XVI, alpha 1
chr9_+_44072196 4.322 ENSMUST00000176671.1
Usp2
ubiquitin specific peptidase 2
chr10_+_80150448 4.254 ENSMUST00000153477.1
Midn
midnolin
chr11_+_60699758 3.921 ENSMUST00000108719.3
Llgl1
lethal giant larvae homolog 1 (Drosophila)
chr15_+_39076885 3.818 ENSMUST00000067072.3
Cthrc1
collagen triple helix repeat containing 1
chr14_-_54554359 3.802 ENSMUST00000022784.8
Haus4
HAUS augmin-like complex, subunit 4
chr9_+_13621646 3.675 ENSMUST00000034401.8
Maml2
mastermind like 2 (Drosophila)
chr5_+_64803513 3.670 ENSMUST00000165536.1
Klf3
Kruppel-like factor 3 (basic)
chr11_-_116110211 3.624 ENSMUST00000106441.1
ENSMUST00000021120.5
Trim47

tripartite motif-containing 47

chr13_+_23531044 3.533 ENSMUST00000102972.3
Hist1h4h
histone cluster 1, H4h
chrX_-_72274747 3.482 ENSMUST00000064780.3
Gabre
gamma-aminobutyric acid (GABA) A receptor, subunit epsilon
chr11_+_60699718 3.470 ENSMUST00000052346.3
Llgl1
lethal giant larvae homolog 1 (Drosophila)
chr18_+_5593566 3.443 ENSMUST00000160910.1
Zeb1
zinc finger E-box binding homeobox 1
chr1_-_45503282 3.400 ENSMUST00000086430.4
Col5a2
collagen, type V, alpha 2
chr10_+_91082940 3.387 ENSMUST00000020150.3
Ikbip
IKBKB interacting protein
chr1_+_153652943 3.358 ENSMUST00000041776.5
Rgs8
regulator of G-protein signaling 8
chr15_-_98728120 3.312 ENSMUST00000003445.6
Fkbp11
FK506 binding protein 11
chr19_-_23448322 3.298 ENSMUST00000036069.6
Mamdc2
MAM domain containing 2
chr5_-_92278155 3.263 ENSMUST00000159345.1
ENSMUST00000113102.3
Naaa

N-acylethanolamine acid amidase

chr5_+_32611171 3.236 ENSMUST00000072311.6
ENSMUST00000168707.2
Yes1

Yamaguchi sarcoma viral (v-yes) oncogene homolog 1

chr6_+_108660772 3.185 ENSMUST00000163617.1
Bhlhe40
basic helix-loop-helix family, member e40
chr1_-_143702832 3.182 ENSMUST00000018337.7
Cdc73
cell division cycle 73, Paf1/RNA polymerase II complex component
chr8_-_92356103 3.179 ENSMUST00000034183.3
4933436C20Rik
RIKEN cDNA 4933436C20 gene
chr5_-_124352233 3.141 ENSMUST00000111472.1
Cdk2ap1
CDK2 (cyclin-dependent kinase 2)-associated protein 1
chr14_-_104467984 3.140 ENSMUST00000053016.8
Pou4f1
POU domain, class 4, transcription factor 1
chr10_+_127739516 3.084 ENSMUST00000054287.7
Zbtb39
zinc finger and BTB domain containing 39
chr13_+_22043189 3.024 ENSMUST00000110452.1
Hist1h2bj
histone cluster 1, H2bj
chr4_+_148130883 3.023 ENSMUST00000084129.2
Mad2l2
MAD2 mitotic arrest deficient-like 2
chr10_+_33905015 2.983 ENSMUST00000169670.1
Rsph4a
radial spoke head 4 homolog A (Chlamydomonas)
chr17_+_34597852 2.975 ENSMUST00000174496.2
ENSMUST00000015596.3
ENSMUST00000173992.1
Ager


advanced glycosylation end product-specific receptor


chr5_+_30913398 2.879 ENSMUST00000031055.5
Emilin1
elastin microfibril interfacer 1
chrX_+_99136119 2.832 ENSMUST00000052839.6
Efnb1
ephrin B1
chr4_+_117835387 2.816 ENSMUST00000169885.1
Slc6a9
solute carrier family 6 (neurotransmitter transporter, glycine), member 9
chr18_-_35498856 2.790 ENSMUST00000025215.8
Sil1
endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae)
chr11_-_106160101 2.735 ENSMUST00000045923.3
Limd2
LIM domain containing 2
chr12_+_76404168 2.697 ENSMUST00000080449.5
Hspa2
heat shock protein 2
chr5_+_7179299 2.561 ENSMUST00000179460.1
Tubb4b-ps1
tubulin, beta 4B class IVB, pseudogene 1
chr13_-_102958084 2.449 ENSMUST00000099202.3
ENSMUST00000172264.1
Mast4

microtubule associated serine/threonine kinase family member 4

chr15_-_38300693 2.264 ENSMUST00000074043.5
Klf10
Kruppel-like factor 10
chr7_-_45052865 2.193 ENSMUST00000057293.6
Prr12
proline rich 12
chr10_+_91083036 2.169 ENSMUST00000020149.5
Ikbip
IKBKB interacting protein
chr2_+_120476911 2.142 ENSMUST00000110716.1
ENSMUST00000028748.6
ENSMUST00000090028.5
ENSMUST00000110719.2
Capn3



calpain 3



chrX_+_101383726 2.118 ENSMUST00000119190.1
Gjb1
gap junction protein, beta 1
chr14_+_64950037 2.111 ENSMUST00000043914.5
Ints9
integrator complex subunit 9
chr11_-_26591729 2.065 ENSMUST00000109504.1
Vrk2
vaccinia related kinase 2
chrX_+_56779437 2.042 ENSMUST00000114773.3
Fhl1
four and a half LIM domains 1
chr19_-_31664356 2.003 ENSMUST00000073581.5
Prkg1
protein kinase, cGMP-dependent, type I
chr13_-_22042949 1.990 ENSMUST00000091741.4
Hist1h2ag
histone cluster 1, H2ag
chr17_+_34263209 1.986 ENSMUST00000040828.5
H2-Ab1
histocompatibility 2, class II antigen A, beta 1
chr3_+_96221111 1.894 ENSMUST00000090781.6
Hist2h2be
histone cluster 2, H2be
chr14_-_64949838 1.866 ENSMUST00000067843.3
ENSMUST00000176489.1
ENSMUST00000175905.1
ENSMUST00000022544.7
ENSMUST00000175744.1
ENSMUST00000176128.1
Hmbox1





homeobox containing 1





chr15_-_96460838 1.834 ENSMUST00000047835.6
Scaf11
SR-related CTD-associated factor 11
chr13_+_21735055 1.806 ENSMUST00000087714.4
Hist1h4j
histone cluster 1, H4j
chr17_+_72918298 1.803 ENSMUST00000024857.6
Lbh
limb-bud and heart
chr7_-_45870928 1.794 ENSMUST00000146672.1
Grin2d
glutamate receptor, ionotropic, NMDA2D (epsilon 4)
chrX_+_10485121 1.692 ENSMUST00000076354.6
ENSMUST00000115526.1
Tspan7

tetraspanin 7

chr14_-_64949632 1.689 ENSMUST00000176832.1
Hmbox1
homeobox containing 1
chr14_+_54640952 1.678 ENSMUST00000169818.2
Gm17606
predicted gene, 17606
chr14_-_20496780 1.626 ENSMUST00000022353.3
Mss51
MSS51 mitochondrial translational activator
chr9_-_20898592 1.565 ENSMUST00000004206.8
Eif3g
eukaryotic translation initiation factor 3, subunit G
chr9_+_106429537 1.534 ENSMUST00000059802.6
Rpl29
ribosomal protein L29
chr3_-_146839365 1.435 ENSMUST00000084614.3
Gm10288
predicted gene 10288
chr11_-_106160708 1.427 ENSMUST00000106875.1
Limd2
LIM domain containing 2
chr17_+_46646225 1.390 ENSMUST00000002844.7
ENSMUST00000113429.1
ENSMUST00000113430.1
Mrpl2


mitochondrial ribosomal protein L2


chr4_+_128688726 1.349 ENSMUST00000106080.1
Phc2
polyhomeotic-like 2 (Drosophila)
chr7_+_82867327 1.315 ENSMUST00000082237.5
Mex3b
mex3 homolog B (C. elegans)
chr11_-_4160286 1.307 ENSMUST00000093381.4
ENSMUST00000101626.2
Ccdc157

coiled-coil domain containing 157

chr3_+_36552600 1.250 ENSMUST00000029269.5
ENSMUST00000136890.1
Exosc9

exosome component 9

chr6_-_138422898 1.208 ENSMUST00000161450.1
ENSMUST00000163024.1
ENSMUST00000162185.1
Lmo3


LIM domain only 3


chr6_-_83775767 1.158 ENSMUST00000014892.6
Tex261
testis expressed gene 261
chr11_-_106159902 1.113 ENSMUST00000064545.4
Limd2
LIM domain containing 2
chr1_+_152399824 1.112 ENSMUST00000044311.8
Colgalt2
collagen beta(1-O)galactosyltransferase 2
chr11_-_115419917 1.083 ENSMUST00000106537.1
ENSMUST00000043931.2
ENSMUST00000073791.3
Atp5h


ATP synthase, H+ transporting, mitochondrial F0 complex, subunit d


chr11_+_97663366 1.077 ENSMUST00000044730.5
Mllt6
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 6
chr16_-_55283237 1.061 ENSMUST00000036412.3
Zpld1
zona pellucida like domain containing 1
chr11_-_48816936 1.049 ENSMUST00000140800.1
Trim41
tripartite motif-containing 41
chr7_+_101361250 1.047 ENSMUST00000137384.1
Arap1
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1
chr17_-_35162969 1.043 ENSMUST00000174805.1
Prrc2a
proline-rich coiled-coil 2A
chr9_-_45936049 1.037 ENSMUST00000034590.2
Tagln
transgelin
chr8_-_47352348 1.013 ENSMUST00000110367.2
Stox2
storkhead box 2
chr15_-_98607611 0.986 ENSMUST00000096224.4
Adcy6
adenylate cyclase 6
chr6_+_38433913 0.970 ENSMUST00000160583.1
Ubn2
ubinuclein 2
chr6_+_147032528 0.954 ENSMUST00000036194.4
Rep15
RAB15 effector protein
chr3_+_102734496 0.901 ENSMUST00000029451.5
Tspan2
tetraspanin 2
chr5_-_24445166 0.882 ENSMUST00000115043.1
ENSMUST00000115041.1
Fastk

Fas-activated serine/threonine kinase

chr4_+_97772734 0.822 ENSMUST00000152023.1
Nfia
nuclear factor I/A
chr17_-_46031813 0.820 ENSMUST00000024747.7
Vegfa
vascular endothelial growth factor A
chr9_-_105521147 0.774 ENSMUST00000176770.1
ENSMUST00000085133.6
Atp2c1

ATPase, Ca++-sequestering

chr9_-_57552760 0.712 ENSMUST00000034856.8
Mpi
mannose phosphate isomerase
chr18_-_38918642 0.666 ENSMUST00000040647.4
Fgf1
fibroblast growth factor 1
chr2_-_128967725 0.640 ENSMUST00000099385.2
Gm10762
predicted gene 10762
chr9_+_96895617 0.604 ENSMUST00000071781.6
Gm10123
predicted pseudogene 10123
chr13_-_98891036 0.588 ENSMUST00000109399.2
Tnpo1
transportin 1
chr12_+_13269111 0.572 ENSMUST00000042953.8
Nbas
neuroblastoma amplified sequence
chr8_+_95825353 0.562 ENSMUST00000074053.4
Gm10094
predicted gene 10094
chr9_+_61373219 0.508 ENSMUST00000162583.1
ENSMUST00000161993.1
ENSMUST00000160882.1
ENSMUST00000160724.1
ENSMUST00000162973.1
ENSMUST00000159050.1
Tle3





transducin-like enhancer of split 3, homolog of Drosophila E(spl)





chr15_-_93336800 0.492 ENSMUST00000080299.6
Yaf2
YY1 associated factor 2
chr13_-_115090123 0.491 ENSMUST00000109226.3
Pelo
pelota homolog (Drosophila)
chr5_-_24445254 0.483 ENSMUST00000030800.6
Fastk
Fas-activated serine/threonine kinase
chr4_+_126677630 0.470 ENSMUST00000030642.2
Psmb2
proteasome (prosome, macropain) subunit, beta type 2
chr9_+_61373482 0.469 ENSMUST00000160541.1
ENSMUST00000161207.1
ENSMUST00000159630.1
Tle3


transducin-like enhancer of split 3, homolog of Drosophila E(spl)


chr11_+_4160348 0.467 ENSMUST00000002198.3
Sf3a1
splicing factor 3a, subunit 1
chr11_+_4637734 0.450 ENSMUST00000109930.2
ENSMUST00000070257.7
Ascc2

activating signal cointegrator 1 complex subunit 2

chr2_+_27079371 0.400 ENSMUST00000091233.6
Adamtsl2
ADAMTS-like 2
chr19_-_5295397 0.389 ENSMUST00000025774.9
Sf3b2
splicing factor 3b, subunit 2
chr16_+_34784917 0.388 ENSMUST00000023538.8
Mylk
myosin, light polypeptide kinase
chr4_+_118621160 0.357 ENSMUST00000147373.1
Ebna1bp2
EBNA1 binding protein 2
chr11_-_3504766 0.356 ENSMUST00000044507.5
Inpp5j
inositol polyphosphate 5-phosphatase J
chr11_-_60115226 0.341 ENSMUST00000130746.1
4930412M03Rik
RIKEN cDNA 4930412M03 gene
chr9_-_36767595 0.328 ENSMUST00000120381.2
Stt3a
STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
chr8_+_45658273 0.326 ENSMUST00000153798.1
Sorbs2
sorbin and SH3 domain containing 2
chr9_+_61373608 0.323 ENSMUST00000161689.1
Tle3
transducin-like enhancer of split 3, homolog of Drosophila E(spl)
chr11_-_102319093 0.296 ENSMUST00000174302.1
ENSMUST00000178839.1
ENSMUST00000006754.7
Ubtf


upstream binding transcription factor, RNA polymerase I


chr2_-_173276144 0.276 ENSMUST00000139306.1
Pmepa1
prostate transmembrane protein, androgen induced 1
chr9_+_122888471 0.270 ENSMUST00000063980.6
Zkscan7
zinc finger with KRAB and SCAN domains 7
chr6_+_54039558 0.260 ENSMUST00000046856.7
Chn2
chimerin (chimaerin) 2
chr3_-_96220880 0.256 ENSMUST00000090782.3
Hist2h2ac
histone cluster 2, H2ac
chr2_+_69670100 0.244 ENSMUST00000100050.3
Klhl41
kelch-like 41
chr7_+_141216626 0.196 ENSMUST00000141804.1
ENSMUST00000148975.1
Rassf7

Ras association (RalGDS/AF-6) domain family (N-terminal) member 7

chr2_+_29869484 0.190 ENSMUST00000047521.6
ENSMUST00000134152.1
Cercam

cerebral endothelial cell adhesion molecule

chr6_+_54039935 0.159 ENSMUST00000114403.1
Chn2
chimerin (chimaerin) 2
chr2_+_119547697 0.132 ENSMUST00000014221.6
ENSMUST00000119172.1
Chp1

calcineurin-like EF hand protein 1

chr7_+_127485221 0.128 ENSMUST00000048896.6
Fbrs
fibrosin
chr2_+_152226839 0.127 ENSMUST00000099224.3
ENSMUST00000124791.1
ENSMUST00000133119.1
Csnk2a1


casein kinase 2, alpha 1 polypeptide


chrX_+_136270302 0.122 ENSMUST00000113112.1
Ngfrap1
nerve growth factor receptor (TNFRSF16) associated protein 1
chr4_-_148500449 0.106 ENSMUST00000030840.3
Angptl7
angiopoietin-like 7
chr13_-_98890974 0.096 ENSMUST00000179301.1
ENSMUST00000179271.1
Tnpo1

transportin 1

chr17_-_46032366 0.071 ENSMUST00000071648.5
ENSMUST00000142351.2
ENSMUST00000167860.1
Vegfa


vascular endothelial growth factor A


chr16_+_43235856 0.067 ENSMUST00000146708.1
Zbtb20
zinc finger and BTB domain containing 20
chr2_-_29869785 0.047 ENSMUST00000047607.1
2600006K01Rik
RIKEN cDNA 2600006K01 gene
chr7_+_83755904 0.023 ENSMUST00000051522.8
ENSMUST00000042280.7
Gm7964

predicted gene 7964


Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
4.2 12.6 GO:0046122 purine deoxyribonucleoside metabolic process(GO:0046122)
4.0 27.9 GO:0009449 gamma-aminobutyric acid biosynthetic process(GO:0009449)
4.0 11.9 GO:0015889 cobalamin transport(GO:0015889)
3.7 18.6 GO:0021764 amygdala development(GO:0021764)
3.1 15.6 GO:0014719 skeletal muscle satellite cell activation(GO:0014719)
2.6 13.0 GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity(GO:0030951)
2.5 7.6 GO:1902460 regulation of mesenchymal stem cell proliferation(GO:1902460) positive regulation of mesenchymal stem cell proliferation(GO:1902462)
2.5 12.4 GO:0035331 negative regulation of hippo signaling(GO:0035331)
2.1 8.4 GO:2000313 fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060825) regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation(GO:2000313)
1.7 8.6 GO:0060754 positive regulation of mast cell chemotaxis(GO:0060754)
1.6 4.9 GO:0060023 soft palate development(GO:0060023)
1.4 6.9 GO:1903026 negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding(GO:1903026)
1.3 6.3 GO:0006447 regulation of translational initiation by iron(GO:0006447) positive regulation of translational initiation by iron(GO:0045994)
1.1 21.8 GO:0045653 negative regulation of megakaryocyte differentiation(GO:0045653)
1.1 5.7 GO:0045657 positive regulation of monocyte differentiation(GO:0045657) cellular response to potassium ion starvation(GO:0051365)
1.1 3.4 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
1.1 22.2 GO:0030903 notochord development(GO:0030903)
1.0 5.0 GO:0060838 lymphatic endothelial cell fate commitment(GO:0060838) regulation of transcription involved in lymphatic endothelial cell fate commitment(GO:0060849)
1.0 2.0 GO:2000224 testosterone biosynthetic process(GO:0061370) regulation of testosterone biosynthetic process(GO:2000224)
0.9 2.8 GO:0061537 glycine secretion(GO:0061536) glycine secretion, neurotransmission(GO:0061537)
0.9 2.7 GO:1901896 positive regulation of calcium-transporting ATPase activity(GO:1901896)
0.8 7.4 GO:0035090 maintenance of apical/basal cell polarity(GO:0035090)
0.8 6.6 GO:0033631 cell-cell adhesion mediated by integrin(GO:0033631)
0.8 3.0 GO:2000048 negative regulation of cell-cell adhesion mediated by cadherin(GO:2000048)
0.7 3.0 GO:0097709 connective tissue replacement involved in inflammatory response wound healing(GO:0002248) connective tissue replacement(GO:0097709)
0.7 15.9 GO:0032967 positive regulation of collagen biosynthetic process(GO:0032967)
0.7 6.7 GO:0048681 negative regulation of axon regeneration(GO:0048681)
0.6 3.1 GO:0003223 ventricular compact myocardium morphogenesis(GO:0003223) proprioception(GO:0019230)
0.6 4.3 GO:1903300 negative regulation of glucokinase activity(GO:0033132) negative regulation of hexokinase activity(GO:1903300)
0.5 2.0 GO:0002339 B cell selection(GO:0002339)
0.5 7.9 GO:0048387 negative regulation of retinoic acid receptor signaling pathway(GO:0048387)
0.5 3.4 GO:0048752 semicircular canal morphogenesis(GO:0048752)
0.4 1.3 GO:0034476 U1 snRNA 3'-end processing(GO:0034473) U5 snRNA 3'-end processing(GO:0034476)
0.4 3.7 GO:0007221 positive regulation of transcription of Notch receptor target(GO:0007221)
0.4 3.6 GO:0035563 positive regulation of chromatin binding(GO:0035563)
0.4 7.7 GO:0050434 positive regulation of viral transcription(GO:0050434)
0.4 3.3 GO:0019800 peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan(GO:0019800)
0.3 0.7 GO:0060681 branch elongation involved in ureteric bud branching(GO:0060681)
0.3 1.3 GO:0072697 protein localization to cell cortex(GO:0072697)
0.3 1.0 GO:0035811 negative regulation of urine volume(GO:0035811)
0.3 1.6 GO:0075525 viral translational termination-reinitiation(GO:0075525)
0.3 0.9 GO:0014005 microglia differentiation(GO:0014004) microglia development(GO:0014005)
0.3 10.1 GO:0048384 retinoic acid receptor signaling pathway(GO:0048384)
0.3 3.8 GO:0033690 positive regulation of osteoblast proliferation(GO:0033690)
0.3 4.3 GO:0048642 negative regulation of skeletal muscle tissue development(GO:0048642)
0.3 3.2 GO:0036120 cellular response to platelet-derived growth factor stimulus(GO:0036120)
0.3 3.2 GO:0001711 endodermal cell fate commitment(GO:0001711)
0.3 3.4 GO:0060159 regulation of dopamine receptor signaling pathway(GO:0060159)
0.3 7.7 GO:0001921 positive regulation of receptor recycling(GO:0001921)
0.2 0.7 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.2 2.1 GO:0015868 purine ribonucleotide transport(GO:0015868)
0.2 4.3 GO:0051894 integrin activation(GO:0033622) positive regulation of focal adhesion assembly(GO:0051894)
0.2 0.4 GO:0060414 aorta smooth muscle tissue morphogenesis(GO:0060414)
0.2 0.8 GO:0055071 cellular manganese ion homeostasis(GO:0030026) Golgi calcium ion homeostasis(GO:0032468) manganese ion homeostasis(GO:0055071)
0.2 1.8 GO:0050966 detection of mechanical stimulus involved in sensory perception of pain(GO:0050966)
0.2 1.9 GO:0002227 innate immune response in mucosa(GO:0002227)
0.2 2.8 GO:0031295 lymphocyte costimulation(GO:0031294) T cell costimulation(GO:0031295)
0.2 0.5 GO:0000389 mRNA 3'-splice site recognition(GO:0000389)
0.1 3.2 GO:0043153 entrainment of circadian clock by photoperiod(GO:0043153)
0.1 7.6 GO:0002066 columnar/cuboidal epithelial cell development(GO:0002066)
0.1 2.1 GO:0070498 interleukin-1-mediated signaling pathway(GO:0070498)
0.1 3.5 GO:0007214 gamma-aminobutyric acid signaling pathway(GO:0007214)
0.1 0.6 GO:2000623 regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:2000622) negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:2000623)
0.1 2.1 GO:0016180 snRNA processing(GO:0016180)
0.1 0.5 GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay(GO:0070966)
0.1 4.7 GO:1901998 toxin transport(GO:1901998)
0.1 2.4 GO:0018105 peptidyl-serine phosphorylation(GO:0018105)
0.1 3.0 GO:0003341 cilium movement(GO:0003341)
0.1 0.7 GO:0006610 ribosomal protein import into nucleus(GO:0006610)
0.1 2.0 GO:0010972 negative regulation of G2/M transition of mitotic cell cycle(GO:0010972)
0.1 0.3 GO:0010991 negative regulation of SMAD protein complex assembly(GO:0010991)
0.0 5.0 GO:0021954 central nervous system neuron development(GO:0021954)
0.0 0.5 GO:0033572 transferrin transport(GO:0033572)
0.0 0.1 GO:0032415 regulation of sodium:proton antiporter activity(GO:0032415) positive regulation of sodium:proton antiporter activity(GO:0032417)
0.0 1.1 GO:0015985 energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.0 2.9 GO:0010811 positive regulation of cell-substrate adhesion(GO:0010811)
0.0 3.8 GO:0051225 spindle assembly(GO:0051225)
0.0 0.7 GO:0045672 positive regulation of osteoclast differentiation(GO:0045672)
0.0 0.3 GO:0006362 transcription elongation from RNA polymerase I promoter(GO:0006362)
0.0 0.4 GO:0060481 lobar bronchus epithelium development(GO:0060481)
0.0 1.8 GO:1900046 regulation of blood coagulation(GO:0030193) regulation of hemostasis(GO:1900046)
0.0 1.8 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 1.2 GO:0060325 face morphogenesis(GO:0060325)
0.0 2.5 GO:0006334 nucleosome assembly(GO:0006334)
0.0 0.2 GO:2001014 regulation of skeletal muscle cell differentiation(GO:2001014)
0.0 1.2 GO:0045600 positive regulation of fat cell differentiation(GO:0045600)
0.0 1.5 GO:0002181 cytoplasmic translation(GO:0002181)
0.0 1.4 GO:0032543 mitochondrial translation(GO:0032543)
0.0 7.7 GO:0016055 Wnt signaling pathway(GO:0016055) cell-cell signaling by wnt(GO:0198738)
0.0 0.4 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.0 1.0 GO:0030855 epithelial cell differentiation(GO:0030855)
0.0 1.2 GO:0006888 ER to Golgi vesicle-mediated transport(GO:0006888)
0.0 1.2 GO:0006342 chromatin silencing(GO:0006342)
0.0 0.9 GO:0031110 regulation of microtubule polymerization or depolymerization(GO:0031110)
0.0 0.3 GO:0003301 physiological muscle hypertrophy(GO:0003298) physiological cardiac muscle hypertrophy(GO:0003301) cell growth involved in cardiac muscle cell development(GO:0061049)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
5.3 15.9 GO:0038045 large latent transforming growth factor-beta complex(GO:0038045)
1.1 3.4 GO:0005588 collagen type V trimer(GO:0005588)
0.9 27.9 GO:0060077 inhibitory synapse(GO:0060077)
0.9 2.7 GO:0036128 CatSper complex(GO:0036128)
0.8 3.0 GO:0016035 zeta DNA polymerase complex(GO:0016035)
0.7 7.4 GO:0000137 Golgi cis cisterna(GO:0000137)
0.6 13.0 GO:0001891 phagocytic cup(GO:0001891)
0.5 7.0 GO:0000940 condensed chromosome outer kinetochore(GO:0000940)
0.5 3.8 GO:0070652 HAUS complex(GO:0070652)
0.4 3.2 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.3 26.5 GO:0000786 nucleosome(GO:0000786)
0.3 10.7 GO:0035371 microtubule plus-end(GO:0035371)
0.3 6.6 GO:0008305 integrin complex(GO:0008305) protein complex involved in cell adhesion(GO:0098636)
0.3 3.5 GO:1902710 GABA receptor complex(GO:1902710) GABA-A receptor complex(GO:1902711)
0.2 3.3 GO:0005614 interstitial matrix(GO:0005614)
0.2 0.6 GO:0070939 Dsl1p complex(GO:0070939)
0.2 12.4 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.2 3.6 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.2 2.1 GO:0005922 connexon complex(GO:0005922)
0.2 2.1 GO:0032039 integrator complex(GO:0032039)
0.2 10.4 GO:0005581 collagen trimer(GO:0005581)
0.1 1.0 GO:0042613 MHC class II protein complex(GO:0042613)
0.1 5.7 GO:0005719 nuclear euchromatin(GO:0005719)
0.1 1.5 GO:0042788 polysomal ribosome(GO:0042788)
0.1 1.7 GO:0017146 NMDA selective glutamate receptor complex(GO:0017146)
0.1 41.4 GO:0005667 transcription factor complex(GO:0005667)
0.1 1.3 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.1 1.6 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.1 1.1 GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)(GO:0000276)
0.1 1.0 GO:0031528 microvillus membrane(GO:0031528)
0.1 1.3 GO:0035102 PRC1 complex(GO:0035102)
0.1 2.5 GO:0032809 neuronal cell body membrane(GO:0032809)
0.0 3.0 GO:0005930 axoneme(GO:0005930) ciliary plasm(GO:0097014)
0.0 0.9 GO:0005686 U2 snRNP(GO:0005686)
0.0 21.7 GO:0005874 microtubule(GO:0005874)
0.0 1.2 GO:0030134 ER to Golgi transport vesicle(GO:0030134)
0.0 8.4 GO:0005802 trans-Golgi network(GO:0005802)
0.0 1.4 GO:0000315 organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762)
0.0 0.5 GO:0005839 proteasome core complex(GO:0005839)
0.0 3.2 GO:0031234 extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)
0.0 0.3 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.0 0.2 GO:0031143 pseudopodium(GO:0031143)
0.0 0.3 GO:0001650 fibrillar center(GO:0001650)
0.0 0.1 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.4 GO:0097610 cleavage furrow(GO:0032154) cell surface furrow(GO:0097610)
0.0 4.3 GO:0005938 cell cortex(GO:0005938)
0.0 11.5 GO:0005783 endoplasmic reticulum(GO:0005783)
0.0 0.9 GO:0043209 myelin sheath(GO:0043209)
0.0 9.5 GO:0005730 nucleolus(GO:0005730)
0.0 2.0 GO:0005925 focal adhesion(GO:0005925)
0.0 2.5 GO:0000139 Golgi membrane(GO:0000139)
0.0 1.0 GO:0055037 recycling endosome(GO:0055037)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
4.2 12.6 GO:0004731 purine-nucleoside phosphorylase activity(GO:0004731)
4.1 16.3 GO:0050436 microfibril binding(GO:0050436)
4.0 27.9 GO:0004351 glutamate decarboxylase activity(GO:0004351)
2.2 6.7 GO:0030158 protein xylosyltransferase activity(GO:0030158)
1.7 11.9 GO:0031419 cobalamin binding(GO:0031419)
1.1 6.3 GO:0070644 vitamin D response element binding(GO:0070644)
1.0 12.4 GO:0045294 alpha-catenin binding(GO:0045294)
0.8 5.0 GO:0001972 retinoic acid binding(GO:0001972)
0.7 10.7 GO:0051010 microtubule plus-end binding(GO:0051010)
0.7 7.7 GO:0030957 Tat protein binding(GO:0030957)
0.6 10.1 GO:0003708 retinoic acid receptor activity(GO:0003708)
0.5 3.2 GO:0043426 MRF binding(GO:0043426)
0.5 2.0 GO:0004692 cGMP-dependent protein kinase activity(GO:0004692)
0.5 7.7 GO:0031702 type 1 angiotensin receptor binding(GO:0031702)
0.5 2.8 GO:0015375 glycine:sodium symporter activity(GO:0015375)
0.4 11.0 GO:0008432 JUN kinase binding(GO:0008432)
0.4 7.6 GO:0050431 transforming growth factor beta binding(GO:0050431)
0.3 6.9 GO:0070628 proteasome binding(GO:0070628)
0.3 3.6 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.3 18.6 GO:0003707 steroid hormone receptor activity(GO:0003707)
0.3 5.7 GO:0035497 cAMP response element binding(GO:0035497)
0.3 0.9 GO:0043183 vascular endothelial growth factor receptor 1 binding(GO:0043183)
0.3 3.6 GO:0044548 S100 protein binding(GO:0044548)
0.3 9.7 GO:0005154 epidermal growth factor receptor binding(GO:0005154)
0.3 2.1 GO:0031432 titin binding(GO:0031432)
0.2 25.4 GO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0003705)
0.2 8.5 GO:0070888 E-box binding(GO:0070888)
0.2 3.1 GO:0070182 DNA polymerase binding(GO:0070182)
0.2 2.0 GO:0015643 toxic substance binding(GO:0015643)
0.2 2.7 GO:0051861 glycolipid binding(GO:0051861)
0.2 0.8 GO:0015410 manganese-transporting ATPase activity(GO:0015410)
0.2 3.5 GO:0004890 GABA-A receptor activity(GO:0004890)
0.2 2.1 GO:0005243 gap junction channel activity(GO:0005243)
0.2 6.3 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.2 1.0 GO:0008294 calcium- and calmodulin-responsive adenylate cyclase activity(GO:0008294)
0.2 1.8 GO:0004972 NMDA glutamate receptor activity(GO:0004972)
0.1 3.3 GO:0043747 protein-N-terminal asparagine amidohydrolase activity(GO:0008418) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity(GO:0008759) iprodione amidohydrolase activity(GO:0018748) (3,5-dichlorophenylurea)acetate amidohydrolase activity(GO:0018749) 4'-(2-hydroxyisopropyl)phenylurea amidohydrolase activity(GO:0034571) didemethylisoproturon amidohydrolase activity(GO:0034573) N-isopropylacetanilide amidohydrolase activity(GO:0034576) N-cyclohexylformamide amidohydrolase activity(GO:0034781) isonicotinic acid hydrazide hydrolase activity(GO:0034876) cis-aconitamide amidase activity(GO:0034882) gamma-N-formylaminovinylacetate hydrolase activity(GO:0034885) N2-acetyl-L-lysine deacetylase activity(GO:0043747) O-succinylbenzoate synthase activity(GO:0043748) indoleacetamide hydrolase activity(GO:0043864) N-acetylcitrulline deacetylase activity(GO:0043909) N-acetylgalactosamine-6-phosphate deacetylase activity(GO:0047419) diacetylchitobiose deacetylase activity(GO:0052773) chitooligosaccharide deacetylase activity(GO:0052790)
0.1 3.8 GO:0017147 Wnt-protein binding(GO:0017147)
0.1 3.2 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.1 0.4 GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity(GO:0052658)
0.1 4.3 GO:0030332 cyclin binding(GO:0030332)
0.1 8.3 GO:0004252 serine-type endopeptidase activity(GO:0004252)
0.1 21.8 GO:0042393 histone binding(GO:0042393)
0.1 4.8 GO:0019955 cytokine binding(GO:0019955)
0.1 1.1 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.1 3.4 GO:0001965 G-protein alpha-subunit binding(GO:0001965)
0.1 0.7 GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861)
0.1 0.3 GO:0001165 RNA polymerase I upstream control element sequence-specific DNA binding(GO:0001165)
0.1 1.3 GO:0032794 GTPase activating protein binding(GO:0032794)
0.0 7.6 GO:0051015 actin filament binding(GO:0051015)
0.0 11.0 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 1.3 GO:0001102 RNA polymerase II activating transcription factor binding(GO:0001102)
0.0 4.7 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.0 0.3 GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity(GO:0004579)
0.0 7.7 GO:0005096 GTPase activator activity(GO:0005096)
0.0 2.3 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046)
0.0 1.6 GO:0003743 translation initiation factor activity(GO:0003743)
0.0 0.7 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.0 0.5 GO:0004298 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.0 4.4 GO:0005085 guanyl-nucleotide exchange factor activity(GO:0005085)
0.0 0.3 GO:0070412 R-SMAD binding(GO:0070412)
0.0 1.1 GO:0035250 UDP-galactosyltransferase activity(GO:0035250)
0.0 2.9 GO:0003735 structural constituent of ribosome(GO:0003735)