Motif ID: Hoxc9

Z-value: 1.016


Transcription factors associated with Hoxc9:

Gene SymbolEntrez IDGene Name
Hoxc9 ENSMUSG00000036139.6 Hoxc9

Activity-expression correlation:

Gene SymbolPromoterPearson corr. coef.P-valuePlot
Hoxc9mm10_v2_chr15_+_102977032_1029770320.501.6e-02Click!


Activity profile for motif Hoxc9.

activity profile for motif Hoxc9


Sorted Z-values histogram for motif Hoxc9

Sorted Z-values for motif Hoxc9



Network of associatons between targets according to the STRING database.



First level regulatory network of Hoxc9

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image


Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr14_+_80000292 4.609 ENSMUST00000088735.3
Olfm4
olfactomedin 4
chr4_+_144893127 4.534 ENSMUST00000142808.1
Dhrs3
dehydrogenase/reductase (SDR family) member 3
chr1_+_58210397 4.399 ENSMUST00000040442.5
Aox4
aldehyde oxidase 4
chr13_+_94083490 4.381 ENSMUST00000156071.1
Lhfpl2
lipoma HMGIC fusion partner-like 2
chr16_-_37384915 4.012 ENSMUST00000114787.1
ENSMUST00000114782.1
ENSMUST00000023526.2
ENSMUST00000114775.1
Stxbp5l



syntaxin binding protein 5-like



chr2_+_70474923 3.476 ENSMUST00000100043.2
Sp5
trans-acting transcription factor 5
chr2_+_4300462 3.196 ENSMUST00000175669.1
Frmd4a
FERM domain containing 4A
chr16_-_37384940 2.985 ENSMUST00000114781.1
ENSMUST00000114780.1
Stxbp5l

syntaxin binding protein 5-like

chr4_+_107830958 2.951 ENSMUST00000106731.2
Lrp8
low density lipoprotein receptor-related protein 8, apolipoprotein e receptor
chr1_-_45503282 2.831 ENSMUST00000086430.4
Col5a2
collagen, type V, alpha 2
chr2_-_26516620 2.393 ENSMUST00000132820.1
Notch1
notch 1
chr8_-_120228221 2.318 ENSMUST00000183235.1
A330074K22Rik
RIKEN cDNA A330074K22 gene
chrX_-_105928547 1.756 ENSMUST00000101305.2
Atrx
alpha thalassemia/mental retardation syndrome X-linked homolog (human)
chr3_+_66985680 1.737 ENSMUST00000065047.6
Rsrc1
arginine/serine-rich coiled-coil 1
chr9_+_35423582 1.614 ENSMUST00000154652.1
Cdon
cell adhesion molecule-related/down-regulated by oncogenes
chrX_-_141474034 1.612 ENSMUST00000101205.2
Col4a6
collagen, type IV, alpha 6
chr17_-_57000018 1.606 ENSMUST00000002740.2
Pspn
persephin
chr11_+_3330401 1.494 ENSMUST00000045153.4
Pik3ip1
phosphoinositide-3-kinase interacting protein 1
chr17_-_49564262 1.486 ENSMUST00000057610.6
Daam2
dishevelled associated activator of morphogenesis 2
chr2_+_91256144 1.401 ENSMUST00000154959.1
ENSMUST00000059566.4
Pacsin3

protein kinase C and casein kinase substrate in neurons 3

chr4_+_100776664 1.382 ENSMUST00000030257.8
ENSMUST00000097955.2
Cachd1

cache domain containing 1

chr4_-_91376433 1.292 ENSMUST00000107109.2
ENSMUST00000107111.2
ENSMUST00000107120.1
Elavl2


ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)


chr2_+_128967383 1.230 ENSMUST00000110320.2
ENSMUST00000110319.2
Zc3h6

zinc finger CCCH type containing 6

chr18_+_65582239 1.162 ENSMUST00000182684.1
Zfp532
zinc finger protein 532
chr4_-_150003130 1.020 ENSMUST00000084117.6
H6pd
hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)
chr2_+_175010241 0.990 ENSMUST00000109069.1
ENSMUST00000109070.2
Gm14444

predicted gene 14444

chr2_-_84650714 0.908 ENSMUST00000111697.2
ENSMUST00000111670.2
ENSMUST00000111696.1
ENSMUST00000111678.1
ENSMUST00000111690.1
ENSMUST00000111695.1
ENSMUST00000111677.1
ENSMUST00000111698.1
ENSMUST00000099941.2
ENSMUST00000111676.1
ENSMUST00000111694.1
ENSMUST00000111675.1
ENSMUST00000111689.1
ENSMUST00000111687.1
ENSMUST00000111692.1
ENSMUST00000111685.1
ENSMUST00000111686.1
ENSMUST00000111688.1
ENSMUST00000111693.1
ENSMUST00000111684.1
Ctnnd1



















catenin (cadherin associated protein), delta 1



















chr2_-_177578199 0.897 ENSMUST00000108945.1
ENSMUST00000108943.1
Gm14406

predicted gene 14406

chr2_-_84650676 0.833 ENSMUST00000067232.3
Ctnnd1
catenin (cadherin associated protein), delta 1
chr2_-_84650490 0.809 ENSMUST00000066177.3
Ctnnd1
catenin (cadherin associated protein), delta 1
chr4_-_91376490 0.792 ENSMUST00000107124.3
Elavl2
ELAV (embryonic lethal, abnormal vision, Drosophila)-like 2 (Hu antigen B)
chr2_-_84650760 0.780 ENSMUST00000111691.1
Ctnnd1
catenin (cadherin associated protein), delta 1
chr6_+_125145235 0.729 ENSMUST00000119527.1
ENSMUST00000088276.6
ENSMUST00000051171.7
ENSMUST00000117675.1
Iffo1



intermediate filament family orphan 1



chr18_+_65582390 0.710 ENSMUST00000169679.1
ENSMUST00000183326.1
Zfp532

zinc finger protein 532

chrX_-_143933089 0.685 ENSMUST00000087313.3
Dcx
doublecortin
chr18_+_65582281 0.681 ENSMUST00000183319.1
Zfp532
zinc finger protein 532
chr10_-_92162753 0.680 ENSMUST00000182197.1
Rmst
rhabdomyosarcoma 2 associated transcript (non-coding RNA)
chrX_+_56609751 0.664 ENSMUST00000144068.1
Slc9a6
solute carrier family 9 (sodium/hydrogen exchanger), member 6
chr17_+_24426676 0.632 ENSMUST00000024946.5
Eci1
enoyl-Coenzyme A delta isomerase 1
chr4_+_136143497 0.573 ENSMUST00000008016.2
Id3
inhibitor of DNA binding 3
chr6_-_119388671 0.566 ENSMUST00000169744.1
Adipor2
adiponectin receptor 2
chr2_-_91255995 0.559 ENSMUST00000180732.1
Gm17281
predicted gene, 17281
chr11_+_85353156 0.544 ENSMUST00000108061.1
ENSMUST00000108062.1
ENSMUST00000108056.1
ENSMUST00000138423.1
ENSMUST00000074875.4
ENSMUST00000092821.3
Bcas3





breast carcinoma amplified sequence 3





chr11_-_80080928 0.533 ENSMUST00000103233.3
ENSMUST00000061283.8
Crlf3

cytokine receptor-like factor 3

chr19_-_10880370 0.513 ENSMUST00000133303.1
Tmem109
transmembrane protein 109
chr9_-_89705017 0.484 ENSMUST00000058488.6
Tmed3
transmembrane emp24 domain containing 3
chr8_+_54954728 0.480 ENSMUST00000033915.7
Gpm6a
glycoprotein m6a
chr2_+_91255954 0.460 ENSMUST00000134699.1
Pacsin3
protein kinase C and casein kinase substrate in neurons 3
chrX_-_37104523 0.413 ENSMUST00000130324.1
Upf3b
UPF3 regulator of nonsense transcripts homolog B (yeast)
chr13_+_113209659 0.358 ENSMUST00000038144.8
Esm1
endothelial cell-specific molecule 1
chr4_+_137594140 0.350 ENSMUST00000105840.1
ENSMUST00000055131.6
ENSMUST00000105839.1
ENSMUST00000105838.1
Usp48



ubiquitin specific peptidase 48



chr3_-_33844255 0.336 ENSMUST00000029222.5
Ccdc39
coiled-coil domain containing 39
chr2_+_3513035 0.316 ENSMUST00000036350.2
Cdnf
cerebral dopamine neurotrophic factor
chr3_+_66985700 0.298 ENSMUST00000046542.6
ENSMUST00000162693.1
Rsrc1

arginine/serine-rich coiled-coil 1

chr9_-_7835255 0.256 ENSMUST00000074246.6
Birc2
baculoviral IAP repeat-containing 2
chr3_+_66985647 0.244 ENSMUST00000162362.1
ENSMUST00000065074.7
Rsrc1

arginine/serine-rich coiled-coil 1

chr1_+_136624901 0.239 ENSMUST00000047734.8
ENSMUST00000112046.1
Zfp281

zinc finger protein 281

chr10_-_13324250 0.222 ENSMUST00000105543.1
Phactr2
phosphatase and actin regulator 2
chr1_+_11414089 0.201 ENSMUST00000048613.7
ENSMUST00000171690.2
ENSMUST00000137824.1
ENSMUST00000135014.1
ENSMUST00000179089.1
A830018L16Rik



A830018L16Rik
RIKEN cDNA A830018L16 gene



RIKEN cDNA A830018L16 gene
chr2_-_128967725 0.198 ENSMUST00000099385.2
Gm10762
predicted gene 10762
chr13_+_58281183 0.178 ENSMUST00000180882.1
ENSMUST00000180452.1
Gm26555

predicted gene, 26555

chr10_-_13324160 0.172 ENSMUST00000105545.4
Phactr2
phosphatase and actin regulator 2
chr6_-_99044414 0.155 ENSMUST00000177507.1
ENSMUST00000123992.1
Foxp1

forkhead box P1

chr15_+_8968389 0.129 ENSMUST00000053308.9
ENSMUST00000166524.1
Ranbp3l

RAN binding protein 3-like

chr7_-_139582790 0.088 ENSMUST00000106095.2
Nkx6-2
NK6 homeobox 2
chr5_-_44101668 0.051 ENSMUST00000087441.4
ENSMUST00000074113.6
Prom1

prominin 1

chr10_-_88605017 0.037 ENSMUST00000119185.1
ENSMUST00000121629.1
Mybpc1

myosin binding protein C, slow-type

chr7_-_116038734 0.033 ENSMUST00000166877.1
Sox6
SRY-box containing gene 6

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 4.4 GO:0046110 xanthine metabolic process(GO:0046110)
0.9 2.8 GO:1903225 negative regulation of endodermal cell differentiation(GO:1903225)
0.8 2.4 GO:0003219 atrioventricular node development(GO:0003162) cardiac right ventricle formation(GO:0003219)
0.7 3.3 GO:0060690 epithelial cell differentiation involved in salivary gland development(GO:0060690)
0.5 1.5 GO:0043553 negative regulation of phosphatidylinositol 3-kinase activity(GO:0043553)
0.4 1.8 GO:0097393 post-embryonic appendage morphogenesis(GO:0035120) post-embryonic limb morphogenesis(GO:0035127) post-embryonic forelimb morphogenesis(GO:0035128) telomeric repeat-containing RNA transcription(GO:0097393) telomeric repeat-containing RNA transcription from RNA pol II promoter(GO:0097394) regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901580) negative regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901581) positive regulation of telomeric RNA transcription from RNA pol II promoter(GO:1901582)
0.4 4.5 GO:0042572 retinol metabolic process(GO:0042572)
0.3 3.0 GO:0038026 reelin-mediated signaling pathway(GO:0038026)
0.2 1.6 GO:0014816 skeletal muscle satellite cell differentiation(GO:0014816)
0.1 7.0 GO:0046676 negative regulation of insulin secretion(GO:0046676)
0.1 3.5 GO:0036342 post-anal tail morphogenesis(GO:0036342)
0.1 1.6 GO:0038063 collagen-activated tyrosine kinase receptor signaling pathway(GO:0038063)
0.1 4.6 GO:1900026 positive regulation of substrate adhesion-dependent cell spreading(GO:1900026)
0.1 0.4 GO:1902202 regulation of hepatocyte growth factor receptor signaling pathway(GO:1902202)
0.1 1.9 GO:0051044 positive regulation of membrane protein ectodomain proteolysis(GO:0051044)
0.1 0.3 GO:1902524 positive regulation of protein K48-linked ubiquitination(GO:1902524)
0.1 3.2 GO:0090162 establishment of epithelial cell polarity(GO:0090162)
0.1 0.6 GO:0061042 vascular wound healing(GO:0061042)
0.1 2.3 GO:0046677 response to antibiotic(GO:0046677)
0.1 1.0 GO:0006098 pentose-phosphate shunt(GO:0006098)
0.1 0.3 GO:0035469 determination of pancreatic left/right asymmetry(GO:0035469)
0.0 0.3 GO:1990118 sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.0 0.7 GO:0021819 layer formation in cerebral cortex(GO:0021819)
0.0 0.5 GO:2000251 positive regulation of actin cytoskeleton reorganization(GO:2000251)
0.0 0.6 GO:0045662 negative regulation of myoblast differentiation(GO:0045662)
0.0 1.6 GO:0001658 branching involved in ureteric bud morphogenesis(GO:0001658)
0.0 0.2 GO:0032625 interleukin-21 production(GO:0032625) interleukin-21 secretion(GO:0072619)
0.0 0.5 GO:0071158 positive regulation of cell cycle arrest(GO:0071158)
0.0 0.5 GO:0071480 cellular response to gamma radiation(GO:0071480)
0.0 0.1 GO:2000768 glomerular parietal epithelial cell differentiation(GO:0072139) positive regulation of epithelial cell differentiation involved in kidney development(GO:2000698) positive regulation of nephron tubule epithelial cell differentiation(GO:2000768)
0.0 0.5 GO:0051491 positive regulation of filopodium assembly(GO:0051491)
0.0 0.1 GO:0021913 regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification(GO:0021912) regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification(GO:0021913)
0.0 0.4 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.8 GO:0005588 collagen type V trimer(GO:0005588)
0.5 2.4 GO:0002193 MAML1-RBP-Jkappa- ICN1 complex(GO:0002193)
0.4 1.8 GO:1990421 subtelomeric heterochromatin(GO:1990421) nuclear subtelomeric heterochromatin(GO:1990707)
0.3 4.6 GO:0042581 specific granule(GO:0042581)
0.3 1.6 GO:0005587 collagen type IV trimer(GO:0005587) network-forming collagen trimer(GO:0098642) collagen network(GO:0098645) basement membrane collagen trimer(GO:0098651)
0.3 3.3 GO:0005915 zonula adherens(GO:0005915)
0.1 7.0 GO:0031201 SNARE complex(GO:0031201)
0.1 0.3 GO:0044308 axonal spine(GO:0044308)
0.0 0.5 GO:0030126 COPI vesicle coat(GO:0030126)
0.0 0.4 GO:0035145 exon-exon junction complex(GO:0035145)
0.0 3.2 GO:0005923 bicellular tight junction(GO:0005923)
0.0 0.3 GO:0035631 CD40 receptor complex(GO:0035631)
0.0 0.1 GO:0071914 prominosome(GO:0071914)
0.0 2.3 GO:0016607 nuclear speck(GO:0016607)
0.0 0.5 GO:0044295 axonal growth cone(GO:0044295)
0.0 2.2 GO:0005875 microtubule associated complex(GO:0005875)
0.0 0.7 GO:0005882 intermediate filament(GO:0005882)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
1.1 4.4 GO:0030151 molybdenum ion binding(GO:0030151)
0.7 3.0 GO:0038025 reelin receptor activity(GO:0038025)
0.6 4.5 GO:0052650 NADP-retinol dehydrogenase activity(GO:0052650)
0.5 1.5 GO:0036313 phosphatidylinositol 3-kinase catalytic subunit binding(GO:0036313)
0.3 1.0 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.3 1.8 GO:0015616 DNA translocase activity(GO:0015616)
0.2 0.5 GO:0010698 acetyltransferase activator activity(GO:0010698)
0.1 0.6 GO:0097003 adipokinetic hormone receptor activity(GO:0097003)
0.1 0.6 GO:0004165 dodecenoyl-CoA delta-isomerase activity(GO:0004165)
0.1 1.9 GO:0019855 calcium channel inhibitor activity(GO:0019855)
0.1 0.4 GO:0005171 hepatocyte growth factor receptor binding(GO:0005171)
0.1 2.4 GO:0005112 Notch binding(GO:0005112)
0.1 3.5 GO:0045296 cadherin binding(GO:0045296)
0.1 2.6 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.1 7.0 GO:0019905 syntaxin binding(GO:0019905)
0.0 0.3 GO:0005451 monovalent cation:proton antiporter activity(GO:0005451) sodium:proton antiporter activity(GO:0015385) potassium:proton antiporter activity(GO:0015386)
0.0 0.7 GO:0009931 calcium-dependent protein serine/threonine kinase activity(GO:0009931)
0.0 3.2 GO:0030674 protein binding, bridging(GO:0030674)
0.0 1.9 GO:0008083 growth factor activity(GO:0008083)
0.0 0.6 GO:0005504 fatty acid binding(GO:0005504)
0.0 1.5 GO:0017048 Rho GTPase binding(GO:0017048)