Motif ID: Msx3

Z-value: 0.353


Transcription factors associated with Msx3:

Gene SymbolEntrez IDGene Name
Msx3 ENSMUSG00000025469.9 Msx3

Activity-expression correlation:

Gene SymbolPromoterPearson corr. coef.P-valuePlot
Msx3mm10_v2_chr7_-_140049140_1400491800.077.4e-01Click!


Activity profile for motif Msx3.

activity profile for motif Msx3


Sorted Z-values histogram for motif Msx3

Sorted Z-values for motif Msx3



Network of associatons between targets according to the STRING database.



First level regulatory network of Msx3

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr15_+_44787746 0.577 ENSMUST00000181839.1
 2310069G16Rik
RIKEN cDNA 2310069G16 gene
chr4_+_102254739 0.406 ENSMUST00000106907.2
 Pde4b
phosphodiesterase 4B, cAMP specific
chr3_-_116253467 0.397 ENSMUST00000090473.5
 Gpr88
G-protein coupled receptor 88
chr2_-_45117349 0.390 ENSMUST00000176438.2
 Zeb2
zinc finger E-box binding homeobox 2
chr4_-_14621805 0.382 ENSMUST00000042221.7
 Slc26a7
solute carrier family 26, member 7
chr2_+_125136692 0.344 ENSMUST00000099452.2
 Ctxn2
cortexin 2
chr2_-_160619971 0.281 ENSMUST00000109473.1
 Gm14221
predicted gene 14221
chr18_+_57468478 0.280 ENSMUST00000091892.2
 Ctxn3
cortexin 3
chr10_+_81257277 0.273 ENSMUST00000117488.1
ENSMUST00000105328.3
ENSMUST00000121205.1
 Matk


megakaryocyte-associated tyrosine kinase


chr4_+_94739276 0.250 ENSMUST00000073939.6
ENSMUST00000102798.1
 Tek

endothelial-specific receptor tyrosine kinase

chr2_-_33086366 0.236 ENSMUST00000049618.2
 Garnl3
GTPase activating RANGAP domain-like 3
chr2_-_33087169 0.216 ENSMUST00000102810.3
 Garnl3
GTPase activating RANGAP domain-like 3
chr9_-_53975246 0.202 ENSMUST00000048409.7
 Elmod1
ELMO/CED-12 domain containing 1
chr7_-_127895578 0.155 ENSMUST00000033074.6
 Vkorc1
vitamin K epoxide reductase complex, subunit 1
chr13_+_83732438 0.154 ENSMUST00000182701.1
 C130071C03Rik
RIKEN cDNA C130071C03 gene
chr12_+_102128718 0.153 ENSMUST00000159329.1
 Slc24a4
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr3_+_66985680 0.151 ENSMUST00000065047.6
 Rsrc1
arginine/serine-rich coiled-coil 1
chr1_+_104768510 0.149 ENSMUST00000062528.8
 Cdh20
cadherin 20
chr4_-_14621494 0.139 ENSMUST00000149633.1
 Slc26a7
solute carrier family 26, member 7
chr11_+_53433299 0.138 ENSMUST00000018382.6
 Gdf9
growth differentiation factor 9
chr15_+_82252397 0.134 ENSMUST00000136948.1
 1500009C09Rik
RIKEN cDNA 1500009C09 gene
chr12_-_71136611 0.132 ENSMUST00000021486.8
ENSMUST00000166120.1
 Timm9

translocase of inner mitochondrial membrane 9

chrM_+_7005 0.130 ENSMUST00000082405.1
 mt-Co2
mitochondrially encoded cytochrome c oxidase II
chr2_-_168767029 0.129 ENSMUST00000075044.3
 Sall4
sal-like 4 (Drosophila)
chrX_+_101449078 0.123 ENSMUST00000033674.5
 Itgb1bp2
integrin beta 1 binding protein 2
chr4_-_14621669 0.116 ENSMUST00000143105.1
 Slc26a7
solute carrier family 26, member 7
chr3_+_66985700 0.114 ENSMUST00000046542.6
ENSMUST00000162693.1
 Rsrc1

arginine/serine-rich coiled-coil 1

chr3_+_66985647 0.113 ENSMUST00000162362.1
ENSMUST00000065074.7
 Rsrc1

arginine/serine-rich coiled-coil 1

chrM_+_9452 0.102 ENSMUST00000082411.1
 mt-Nd3
mitochondrially encoded NADH dehydrogenase 3
chr17_+_56613392 0.101 ENSMUST00000080492.5
 Rpl36
ribosomal protein L36
chr19_+_5474681 0.097 ENSMUST00000165485.1
ENSMUST00000166253.1
ENSMUST00000167371.1
ENSMUST00000167855.1
ENSMUST00000070118.7
 Efemp2




epidermal growth factor-containing fibulin-like extracellular matrix protein 2




chr7_+_101896817 0.096 ENSMUST00000143835.1
 Anapc15
anaphase prompoting complex C subunit 15
chrX_+_107255878 0.092 ENSMUST00000101294.2
ENSMUST00000118820.1
ENSMUST00000120971.1
 Gpr174


G protein-coupled receptor 174


chr8_+_107031218 0.091 ENSMUST00000034388.9
 Vps4a
vacuolar protein sorting 4a (yeast)
chr7_+_101896340 0.088 ENSMUST00000035395.7
ENSMUST00000106973.1
ENSMUST00000144207.1
 Anapc15


anaphase prompoting complex C subunit 15


chr3_+_106034661 0.084 ENSMUST00000170669.2
 Gm4540
predicted gene 4540
chr17_-_24527830 0.082 ENSMUST00000176353.1
ENSMUST00000176237.1
 Traf7

TNF receptor-associated factor 7

chr11_+_109543694 0.080 ENSMUST00000106696.1
 Arsg
arylsulfatase G
chr3_-_41742471 0.078 ENSMUST00000026866.8
 Sclt1
sodium channel and clathrin linker 1
chr17_-_24527925 0.077 ENSMUST00000176652.1
 Traf7
TNF receptor-associated factor 7
chrX_-_60893430 0.076 ENSMUST00000135107.2
 Sox3
SRY-box containing gene 3
chr11_+_116843278 0.075 ENSMUST00000106370.3
 Mettl23
methyltransferase like 23
chr2_-_174346712 0.071 ENSMUST00000168292.1
 Gm20721
predicted gene, 20721
chr2_-_168767136 0.069 ENSMUST00000029061.5
ENSMUST00000103074.1
 Sall4

sal-like 4 (Drosophila)

chr2_+_163658370 0.068 ENSMUST00000164399.1
ENSMUST00000064703.6
ENSMUST00000099105.2
ENSMUST00000152418.1
ENSMUST00000126182.1
ENSMUST00000131228.1
 Pkig





protein kinase inhibitor, gamma





chr10_+_88379127 0.063 ENSMUST00000127615.1
 Gnptab
N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
chr7_+_103550368 0.062 ENSMUST00000106888.1
 Olfr613
olfactory receptor 613
chr13_+_67863324 0.060 ENSMUST00000078471.5
 BC048507
cDNA sequence BC048507
chr10_+_88379217 0.060 ENSMUST00000130301.1
ENSMUST00000020251.8
 Gnptab

N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits

chrM_+_9870 0.058 ENSMUST00000084013.1
 mt-Nd4l
mitochondrially encoded NADH dehydrogenase 4L
chr7_+_3645267 0.058 ENSMUST00000038913.9
 Cnot3
CCR4-NOT transcription complex, subunit 3
chr18_+_37819543 0.057 ENSMUST00000055935.5
 Pcdhga9
protocadherin gamma subfamily A, 9
chr10_+_39612934 0.055 ENSMUST00000019987.6
 Traf3ip2
TRAF3 interacting protein 2
chr11_+_70018421 0.051 ENSMUST00000108588.1
 Dlg4
discs, large homolog 4 (Drosophila)
chr6_+_134640940 0.051 ENSMUST00000062755.8
 Loh12cr1
loss of heterozygosity, 12, chromosomal region 1 homolog (human)
chr3_+_41742615 0.048 ENSMUST00000146165.1
ENSMUST00000119572.1
ENSMUST00000108065.2
ENSMUST00000120167.1
ENSMUST00000026867.7
ENSMUST00000026868.7
 D3Ertd751e





DNA segment, Chr 3, ERATO Doi 751, expressed





chr1_+_34439851 0.045 ENSMUST00000027303.7
 Imp4
IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
chr17_+_21383725 0.043 ENSMUST00000056107.4
ENSMUST00000162659.1
 Zfp677

zinc finger protein 677

chr3_+_83055516 0.042 ENSMUST00000150268.1
ENSMUST00000122128.1
 Plrg1

pleiotropic regulator 1, PRL1 homolog (Arabidopsis)

chr1_-_127840290 0.042 ENSMUST00000061512.2
 Map3k19
mitogen-activated protein kinase kinase kinase 19
chr10_-_76110956 0.032 ENSMUST00000120757.1
 Slc5a4b
solute carrier family 5 (neutral amino acid transporters, system A), member 4b
chr3_+_94837533 0.030 ENSMUST00000107270.2
 Pogz
pogo transposable element with ZNF domain
chr12_+_72441933 0.027 ENSMUST00000161284.1
 Lrrc9
leucine rich repeat containing 9
chr16_+_49699198 0.025 ENSMUST00000046777.4
ENSMUST00000142682.1
 Ift57

intraflagellar transport 57

chr3_+_66985947 0.025 ENSMUST00000161726.1
ENSMUST00000160504.1
 Rsrc1

arginine/serine-rich coiled-coil 1

chr13_-_29984219 0.020 ENSMUST00000146092.1
 E2f3
E2F transcription factor 3
chrX_+_16619698 0.020 ENSMUST00000026013.5
 Maoa
monoamine oxidase A
chr4_+_134930898 0.019 ENSMUST00000030622.2
 Syf2
SYF2 homolog, RNA splicing factor (S. cerevisiae)
chr12_+_72441852 0.011 ENSMUST00000162159.1
 Lrrc9
leucine rich repeat containing 9
chr3_+_32515295 0.011 ENSMUST00000029203.7
 Zfp639
zinc finger protein 639
chr15_+_38661904 0.009 ENSMUST00000022904.6
 Atp6v1c1
ATPase, H+ transporting, lysosomal V1 subunit C1
chr9_+_44398176 0.003 ENSMUST00000165839.1
 Slc37a4
solute carrier family 37 (glucose-6-phosphate transporter), member 4
chr3_+_138374121 0.003 ENSMUST00000171054.1
 Adh6-ps1
alcohol dehydrogenase 6 (class V), pseudogene 1
chr9_+_72806874 0.001 ENSMUST00000055535.8
 Prtg
protogenin homolog (Gallus gallus)

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0019532 oxalate transport(GO:0019532)
0.1 0.2 GO:0048014 Tie signaling pathway(GO:0048014)
0.1 0.4 GO:1903056 regulation of lens fiber cell differentiation(GO:1902746) positive regulation of lens fiber cell differentiation(GO:1902748) regulation of melanosome organization(GO:1903056)
0.1 0.2 GO:0018214 peptidyl-glutamic acid carboxylation(GO:0017187) protein carboxylation(GO:0018214)
0.0 0.1 GO:0016256 N-glycan processing to lysosome(GO:0016256)
0.0 0.1 GO:0045039 protein import into mitochondrial inner membrane(GO:0045039)
0.0 0.4 GO:1901898 negative regulation of relaxation of muscle(GO:1901078) negative regulation of relaxation of cardiac muscle(GO:1901898)
0.0 0.1 GO:0009838 abscission(GO:0009838) positive regulation of viral budding via host ESCRT complex(GO:1903774)
0.0 0.1 GO:0042701 progesterone secretion(GO:0042701)
0.0 0.2 GO:1903504 regulation of mitotic cell cycle spindle assembly checkpoint(GO:0090266) regulation of mitotic spindle checkpoint(GO:1903504)
0.0 0.1 GO:0045162 clustering of voltage-gated sodium channels(GO:0045162)
0.0 0.4 GO:0046677 response to antibiotic(GO:0046677)
0.0 0.2 GO:0000185 activation of MAPKKK activity(GO:0000185)
0.0 0.2 GO:0097186 amelogenesis(GO:0097186)
0.0 0.2 GO:0001833 inner cell mass cell proliferation(GO:0001833)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0042719 mitochondrial intermembrane space protein transporter complex(GO:0042719)
0.0 0.4 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.0 GO:0034457 Mpp10 complex(GO:0034457)
0.0 0.1 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.0 0.1 GO:0090543 Flemming body(GO:0090543)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 GO:0019531 oxalate transmembrane transporter activity(GO:0019531)
0.0 0.1 GO:0003976 UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity(GO:0003976)
0.0 0.2 GO:0008273 calcium, potassium:sodium antiporter activity(GO:0008273)
0.0 0.0 GO:0030519 snoRNP binding(GO:0030519)
0.0 0.2 GO:0048038 quinone binding(GO:0048038)
0.0 0.4 GO:0070412 R-SMAD binding(GO:0070412)
0.0 0.1 GO:0004984 olfactory receptor activity(GO:0004984)