Motif ID: RFX1..5_RFXANK_RFXAP.p2

Z-value: 4.419

Transcription factors associated with RFX1..5_RFXANK_RFXAP.p2:

NameEntrezDescription
Rfx1 19724 regulatory factor X, 1 (influences HLA class II expression)
Rfx2 19725 regulatory factor X, 2 (influences HLA class II expression)
Rfx3 19726 regulatory factor X, 3 (influences HLA class II expression)
Rfx4 71137 regulatory factor X, 4 (influences HLA class II expression)
Rfx5 53970 regulatory factor X, 5 (influences HLA class II expression)
Rfxank 19727 regulatory factor X-associated ankyrin-containing protein
Rfxap 170767 regulatory factor X-associated protein

Activity-expression correlation:

GenePromoterPearsonP-valuePlot
Rfx5chr3_+_94758056-0.711.2e-06Click!
Rfx3chr19_-_280855340.502.1e-03Click!
Rfx4chr10_+_842187920.316.6e-02Click!
Rfx2chr17_-_569703320.298.2e-02Click!
Rfxankchr8_-_726629940.231.8e-01Click!
Rfx1chr8_+_865907180.231.8e-01Click!
Rfxapchr3_-_54611663-0.192.8e-01Click!


Activity profile for motif RFX1..5_RFXANK_RFXAP.p2.

activity profile for motif RFX1..5_RFXANK_RFXAP.p2


Sorted Z-values histogram for motif RFX1..5_RFXANK_RFXAP.p2

Sorted Z-values for motif RFX1..5_RFXANK_RFXAP.p2



Network of associatons between targets according to the STRING database.



First level regulatory network of RFX1..5_RFXANK_RFXAP.p2

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Description
chr15_+_97998282 36.189 AI836003
expressed sequence AI836003
chr9_-_60535699 23.959 Lrrc49
leucine rich repeat containing 49
chr2_-_73613381 20.035 NM_001113246
NM_001166603
Chn1

chimerin (chimaerin) 1

chrX_+_33735898 18.789 NM_028325
Zcchc12
zinc finger, CCHC domain containing 12
chr3_+_53959956 16.957 NM_016984
Trpc4
transient receptor potential cation channel, subfamily C, member 4
chr1_-_157264398 16.377 NM_011273
Xpr1
xenotropic and polytropic retrovirus receptor 1
chr3_+_82162091 15.763 Mtap9
microtubule-associated protein 9
chr11_-_70846926 15.504 6330403K07Rik
RIKEN cDNA 6330403K07 gene
chr16_+_78301923 15.182 NM_001025192
NM_009988
Cxadr

coxsackie virus and adenovirus receptor

chr15_+_97998090 14.071 NM_177716
AI836003
expressed sequence AI836003
chr5_+_120881778 13.552 NM_008499
Lhx5
LIM homeobox protein 5
chr7_+_17530050 13.346 Pnmal2
PNMA-like 2
chrX_+_7496899 13.241 NM_013892
Pcsk1n
proprotein convertase subtilisin/kexin type 1 inhibitor
chr1_-_135817945 11.719 NM_054077
Prelp
proline arginine-rich end leucine-rich repeat
chr3_+_82162037 11.451 Mtap9
microtubule-associated protein 9
chr9_+_47338431 11.363 NM_001025600
NM_018770
NM_207675
NM_207676
Cadm1



cell adhesion molecule 1



chr2_-_134469806 11.334 NM_029148
Tmx4
thioredoxin-related transmembrane protein 4
chr5_+_31014229 11.169 NM_023047
Dpysl5
dihydropyrimidinase-like 5
chr12_+_30213224 11.139 NM_001093775
NM_001093778
NM_008666
Myt1l


myelin transcription factor 1-like


chr3_-_108339375 10.309 NM_001033304
5330417C22Rik
RIKEN cDNA 5330417C22 gene
chr14_+_77556622 10.308 NM_172813
Enox1
ecto-NOX disulfide-thiol exchanger 1
chr5_+_125048757 9.562 NM_026486
Tctn2
tectonic family member 2
chr17_-_80689434 9.554 Dhx57
DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57
chr6_-_90378423 9.467 NM_173775
Ccdc37
coiled-coil domain containing 37
chr11_+_53380870 9.284 NM_008443
Kif3a
kinesin family member 3A
chr9_-_26962964 9.150 NM_023277
Jam3
junction adhesion molecule 3
chr16_+_3908975 8.812 NM_029738
Cluap1
clusterin associated protein 1
chr2_-_91284827 8.697 1110051M20Rik
RIKEN cDNA 1110051M20 gene
chr15_-_78971563 8.199 NM_138581
1700088E04Rik
RIKEN cDNA 1700088E04 gene
chr2_-_118082593 8.100 NM_027759
Fsip1
fibrous sheath-interacting protein 1
chr15_-_83341285 7.966 NM_178869
Ttll1
tubulin tyrosine ligase-like 1
chr11_+_3795221 7.956 NM_173745
Dusp18
dual specificity phosphatase 18
chrX_-_99266499 7.815 NM_183318
Rgag4
retrotransposon gag domain containing 4
chr18_+_23962468 7.786 NM_153058
Mapre2
microtubule-associated protein, RP/EB family, member 2
chr4_-_77857753 7.703 Ptprd
protein tyrosine phosphatase, receptor type, D
chr3_+_13946371 7.664 NM_001163329
NM_001163330
Ralyl

RALY RNA binding protein-like

chr10_+_20672352 7.658 NM_026203
Ahi1
Abelson helper integration site 1
chr19_-_46401618 7.503 NM_028627
Psd
pleckstrin and Sec7 domain containing
chr7_-_99785544 7.407 NM_028665
Ankrd42
ankyrin repeat domain 42
chr5_+_115751128 7.337


chr16_-_33056255 7.295 NM_178378
Iqcg
IQ motif containing G
chr11_-_74710562 7.230 NM_197943
Sgsm2
small G protein signaling modulator 2
chr7_-_147268395 7.220 NM_001190385
NM_026769
Caly

calcyon neuron-specific vesicular protein

chr10_-_41738158 7.061 NM_001034858
Armc2
armadillo repeat containing 2
chr1_-_135817867 6.994


chr18_+_61085283 6.960 NM_177407
Camk2a
calcium/calmodulin-dependent protein kinase II alpha
chr4_+_109015660 6.900 NM_001159964
Eps15
epidermal growth factor receptor pathway substrate 15
chr18_-_78402529 6.888 Slc14a2
solute carrier family 14 (urea transporter), member 2
chr7_+_6683288 6.866 NM_021323
Usp29
ubiquitin specific peptidase 29
chr8_+_74743620 6.846 NM_026455
Fam32a
family with sequence similarity 32, member A
chr4_+_110070336 6.756 NM_001048189
NM_030231
Agbl4

ATP/GTP binding protein-like 4

chr12_+_72149332 6.706 Arid4a
AT rich interactive domain 4A (RBP1-like)
chr10_+_34017221 6.692 NM_030203
Tspyl4
TSPY-like 4
chr5_-_115263896 6.678 1500011B03Rik
RIKEN cDNA 1500011B03 gene
chr5_-_136646451 6.532 NM_178751
Orai2
ORAI calcium release-activated calcium modulator 2
chr11_+_83116262 6.487 Ap2b1
adaptor-related protein complex 2, beta 1 subunit
chr2_-_91284778 6.476 NM_175123
1110051M20Rik
RIKEN cDNA 1110051M20 gene
chr4_+_123582074 6.456 NM_019660
Mycbp
c-myc binding protein
chr10_+_105907394 6.442 NM_177373
Ppfia2
protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2
chr9_-_60535274 6.341 NM_001146047
Lrrc49
leucine rich repeat containing 49
chr16_-_32099802 6.312 NM_001111025
NM_024464
Pigx

phosphatidylinositol glycan anchor biosynthesis, class X

chr15_-_84388245 6.248 NM_177630
Ldoc1l
leucine zipper, down-regulated in cancer 1-like
chr2_-_29904342 6.230 NM_001008498
Wdr34
WD repeat domain 34
chr13_+_55565627 6.175 NM_001030296
Prr7
proline rich 7 (synaptic)
chr12_+_114378688 6.167 Crip2
cysteine rich protein 2
chr4_-_12099125 6.161 NM_026558
Fam92a
family with sequence similarity 92, member A
chr11_-_87172541 6.105 Ppm1e
protein phosphatase 1E (PP2C domain containing)
chr3_-_94276817 6.031 Riiad1
regulatory subunit of type II PKA R-subunit (RIIa) domain containing 1
chr4_+_53644336 5.993 NM_001195284
NM_176966
Fsd1l

fibronectin type III and SPRY domain containing 1-like

chr1_+_169619688 5.827 NM_033652
Lmx1a
LIM homeobox transcription factor 1 alpha
chr17_-_80606644 5.740 NM_001195485
NM_001195486
NM_001195487
NM_146083
Srsf7



serine/arginine-rich splicing factor 7



chr6_-_90732001 5.721 E130314K07Rik
RIKEN cDNA E130314K07 gene
chrX_-_130432840 5.623 NM_019656
Tspan6
tetraspanin 6
chr11_+_119090424 5.595 Ccdc40
coiled-coil domain containing 40
chr4_-_77857594 5.537 Ptprd
protein tyrosine phosphatase, receptor type, D
chr15_-_33617572 5.387 NM_001085421
Tspyl5
testis-specific protein, Y-encoded-like 5
chr17_-_85489544 5.311 NM_001163622
NM_001163623
NM_145984
NM_001163624
Prepl



prolyl endopeptidase-like



chr17_-_80606526 5.308 Srsf7
serine/arginine-rich splicing factor 7
chr5_-_115750940 5.212 Dynll1
dynein light chain LC8-type 1
chr8_-_122099061 5.209 Hsdl1
hydroxysteroid dehydrogenase like 1
chr19_+_6363686 5.160 NM_001110791
NM_011750
Sf1

splicing factor 1

chr5_+_23606402 5.051 NM_001161800
NM_026448
Klhl7

kelch-like 7 (Drosophila)

chr15_+_100592177 5.033 NM_021530
Slc4a8
solute carrier family 4 (anion exchanger), member 8
chr7_+_116094153 5.005 BC049265
cDNA sequence BC049265
chr16_-_16829386 4.977 NM_015773
Spag6
sperm associated antigen 6
chr4_+_125735808 4.967 NM_172701
Oscp1
organic solute carrier partner 1
chr9_-_60535841 4.934 NM_001146046
NM_145616
Lrrc49

leucine rich repeat containing 49

chr4_+_151712914 4.923 Chd5
chromodomain helicase DNA binding protein 5
chr10_-_128082881 4.837 NM_011772
Ikzf4
IKAROS family zinc finger 4
chr7_+_129210954 4.823 Ubfd1
ubiquitin family domain containing 1
chr12_-_32746061 4.819 NM_011158
Prkar2b
protein kinase, cAMP dependent regulatory, type II beta
chr9_-_72833159 4.803 NM_001198789
Gm5918
predicted gene 5918
chr12_-_73509668 4.796 Rtn1
reticulon 1
chr5_+_34326081 4.723 NM_001033458
Gm1673
predicted gene 1673
chr11_-_53380806 4.709 A430108G06Rik
RIKEN cDNA A430108G06 gene
chr6_-_77929685 4.699 Ctnna2
catenin (cadherin associated protein), alpha 2
chr11_-_72175341 4.687 NM_011569
Tekt1
tektin 1
chr14_-_71028756 4.658 Epb4.9
erythrocyte protein band 4.9
chr7_+_123647881 4.653 NM_001130479
NM_016773
Nucb2

nucleobindin 2

chr4_+_117222924 4.641 NM_080469
Eri3
exoribonuclease 3
chr12_+_53800369 4.615 NM_198111
Akap6
A kinase (PRKA) anchor protein 6
chr2_-_5816445 4.591 Sec61a2
Sec61, alpha subunit 2 (S. cerevisiae)
chr18_-_77286034 4.589 NM_027721
Katnal2
katanin p60 subunit A-like 2
chr7_+_17545027 4.523 NM_001007569
Pnmal1
PNMA-like 1
chr7_+_139158135 4.521 NM_173410
Gpr26
G protein-coupled receptor 26
chr8_-_67212325 4.515 NM_025436
Sc4mol
sterol-C4-methyl oxidase-like
chr2_+_69485227 4.508 NM_028284
Bbs5
Bardet-Biedl syndrome 5 (human)
chr2_+_90744878 4.460 NM_025991
Kbtbd4
kelch repeat and BTB (POZ) domain containing 4
chr7_+_147080594 4.437 NM_177261
Kndc1
kinase non-catalytic C-lobe domain (KIND) containing 1
chr9_-_105297572 4.433 NM_172461
Nek11
NIMA (never in mitosis gene a)-related expressed kinase 11
chr4_+_151712739 4.406 NM_001081376
NM_029216
Chd5

chromodomain helicase DNA binding protein 5

chr11_-_65981945 4.382 NM_001099633
Dnahc9
dynein, axonemal, heavy chain 9
chr8_-_23916037 4.368 NM_001122820
NM_029505
Ap3m2

adaptor-related protein complex 3, mu 2 subunit

chr6_+_137200819 4.321 NM_001164401
NM_011216
Ptpro

protein tyrosine phosphatase, receptor type, O

chr3_-_89049088 4.321 NM_001039466
Trim46
tripartite motif-containing 46
chr6_+_88034512 4.317 Rpn1
ribophorin I
chr17_+_80689536 4.287 NM_194269
Morn2
MORN repeat containing 2
chr8_-_85856284 4.277 NM_001170691
NM_178736
Elmod2

ELMO domain containing 2

chr19_-_57271875 4.268 NM_001103177
Ablim1
actin-binding LIM protein 1
chr11_+_20991321 4.254 NM_023324
Peli1
pellino 1
chr6_-_77929575 4.254 Ctnna2
catenin (cadherin associated protein), alpha 2
chr12_-_112079127 4.243 NM_011973
Stk30
serine/threonine kinase 30
chr8_-_122099088 4.117 NM_175185
Hsdl1
hydroxysteroid dehydrogenase like 1
chr11_+_87574041 4.089 NM_172449
Bzrap1
benzodiazepine receptor associated protein 1
chr3_+_124023954 4.089 NM_146140
Tram1l1
translocation associated membrane protein 1-like 1
chr15_+_75534737 4.075 Rhpn1
rhophilin, Rho GTPase binding protein 1
chr4_+_33069972 4.069 NM_027491
Rragd
Ras-related GTP binding D
chr8_-_122099015 4.049 Hsdl1
hydroxysteroid dehydrogenase like 1
chr6_-_77929660 4.046 NM_001109764
NM_009819
NM_145732
Ctnna2


catenin (cadherin associated protein), alpha 2


chr9_-_8042801 4.039 NM_199017
9230110C19Rik
RIKEN cDNA 9230110C19 gene
chr13_+_24936973 4.035 NM_001081051
D130043K22Rik
RIKEN cDNA D130043K22 gene
chr17_-_31992708 4.027 NM_010831
Sik1
salt inducible kinase 1
chr10_-_75227029 3.990 NM_172549
Cabin1
calcineurin binding protein 1
chr18_-_43847193 3.954 Jakmip2
janus kinase and microtubule interacting protein 2
chr1_+_174412343 3.954 NM_001145800
NM_033608
Igsf9

immunoglobulin superfamily, member 9

chr4_-_12015073 3.919 NM_177861
Tmem67
transmembrane protein 67
chr3_-_154756325 3.886 NM_029330
Fpgt
fucose-1-phosphate guanylyltransferase
chr5_-_143026961 3.879 NM_178702
Radil
Ras association and DIL domains
chr2_-_130985746 3.857 NM_026091
1700037H04Rik
RIKEN cDNA 1700037H04 gene
chr1_-_60099916 3.842 NM_027407
Ica1l
islet cell autoantigen 1-like
chr8_-_125736641 3.840 NM_145606
Chmp1a
chromatin modifying protein 1A
chr8_+_34842304 3.803 NM_001167921
Gtf2e2
general transcription factor II E, polypeptide 2 (beta subunit)
chr3_+_82161952 3.798 NM_001081230
Mtap9
microtubule-associated protein 9
chr10_-_38853662 3.783 NM_183254
1700025K23Rik
RIKEN cDNA 1700025K23 gene
chr9_+_63450444 3.764 NM_025857
Aagab
alpha- and gamma-adaptin binding protein
chr11_-_3093382 3.750 NM_030207
C330046E03
Sfi1
hypothetical protein C330046E03
Sfi1 homolog, spindle assembly associated (yeast)
chr12_+_114378368 3.743 NM_024223
Crip2
cysteine rich protein 2
chr4_+_111392586 3.734 NM_026470
Spata6
spermatogenesis associated 6
chr7_+_53040723 3.727 Lmtk3
lemur tyrosine kinase 3
chr6_-_115788429 3.698 NM_001110506
BC060267
cDNA sequence BC060267
chr12_-_85702758 3.693 NM_172581
Fam161b
family with sequence similarity 161, member B
chr6_+_55153376 3.683 NM_001142781
NM_177883
Fam188b

family with sequence similarity 188, member B

chr7_+_146399173 3.665 NM_001143755
Lrrc27
leucine rich repeat containing 27
chr5_-_141178229 3.659 NM_028833
Iqce
IQ motif containing E
chr2_+_84877428 3.652 Ssrp1
structure specific recognition protein 1
chr4_+_57447340 3.635 Palm2
paralemmin 2
chr14_+_77556569 3.622 Enox1
ecto-NOX disulfide-thiol exchanger 1
chr8_+_72356545 3.617 NM_001024954
Pbx4
pre-B-cell leukemia homeobox 4
chr15_-_78893275 3.578 NM_144849
Ankrd54
ankyrin repeat domain 54
chr9_-_62659736 3.569 Fem1b
feminization 1 homolog b (C. elegans)
chr11_-_90499370 3.548 NM_011505
Stxbp4
syntaxin binding protein 4
chr11_-_105805442 3.544 NM_007805
Cyb561
cytochrome b-561
chr9_+_59426108 3.542 NM_175235
Celf6
CUGBP, Elav-like family member 6
chr11_-_35793951 3.535 Wwc1
WW, C2 and coiled-coil domain containing 1
chr12_+_53800302 3.531 Akap6
A kinase (PRKA) anchor protein 6
chr7_+_133630844 3.528 NM_001163713
NM_172745
Tufm

Tu translation elongation factor, mitochondrial

chr5_-_122714423 3.494 NM_001039153
Tctn1
tectonic family member 1
chr4_+_122693835 3.468 NM_025873
Trit1
tRNA isopentenyltransferase 1
chr2_+_140221165 3.462 NM_001013802
NM_028387
Macrod2

MACRO domain containing 2

chr7_+_17323737 3.448 NM_198613
Ap2s1
adaptor-related protein complex 2, sigma 1 subunit
chr1_-_157264358 3.444 Xpr1
xenotropic and polytropic retrovirus receptor 1
chr11_+_72028639 3.438 NM_001163728
4930563E22Rik
RIKEN cDNA 4930563E22 gene
chr5_-_150438856 3.404 NM_013559
Hsph1
heat shock 105kDa/110kDa protein 1
chr13_-_99696254 3.388 NM_178716
Tnpo1
transportin 1
chr12_+_85750017 3.358 NM_028377
2900006K08Rik
RIKEN cDNA 2900006K08 gene
chr10_+_39451923 3.349 NM_011264
Rev3l
REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)
chr10_+_84380371 3.340 NM_001013441
Ric8b
resistance to inhibitors of cholinesterase 8 homolog B (C. elegans)
chr8_-_97666364 3.339 NM_001145831
NM_010631
Kifc3

kinesin family member C3

chr1_+_163072784 3.335 NM_028664
Ankrd45
ankyrin repeat domain 45
chr5_-_103640272 3.331 NM_001081567
NM_009158
Mapk10

mitogen-activated protein kinase 10

chr18_-_46358466 3.311 NM_001170855
Trim36
tripartite motif-containing 36
chr2_-_21126852 3.297 NM_027728
Enkur
enkurin, TRPC channel interacting protein
chr9_-_121186287 3.294 NM_177589
Ulk4
unc-51-like kinase 4 (C. elegans)
chr17_-_46281016 3.290 NM_029338
Rsph9
radial spoke head 9 homolog (Chlamydomonas)
chr2_+_118489015 3.287 Pak6
p21 protein (Cdc42/Rac)-activated kinase 6
chr14_+_99499149 3.285 Pibf1
progesterone immunomodulatory binding factor 1
chr11_-_116196604 3.281 NM_008240
Foxj1
forkhead box J1
chr2_+_31007833 3.249 NM_178760
Gpr107
G protein-coupled receptor 107
chr16_+_44394895 3.248 NM_001033247
Wdr52
WD repeat domain 52
chr3_-_126928844 3.213 Ank2
ankyrin 2, brain
chrX_-_7709907 3.211 NM_026137
Wdr13
WD repeat domain 13
chr1_+_88051331 3.193 NM_030184
NM_027456
Armc9

armadillo repeat containing 9

chr5_-_115273443 3.192 NM_181075
2610524H06Rik
RIKEN cDNA 2610524H06 gene
chr2_+_35516774 3.185 Dab2ip
disabled homolog 2 (Drosophila) interacting protein
chr5_+_91360221 3.163 NM_026788
Mthfd2l
methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like
chr9_+_65308712 3.158 NM_138584
Spg21
spastic paraplegia 21 homolog (human)
chr13_+_46764816 3.157 NM_001033192
C78339
expressed sequence C78339
chr3_+_108394195 3.157 NM_181400
Wdr47
WD repeat domain 47
chr8_+_112741857 3.140 NM_146215
Ftsjd1
FtsJ methyltransferase domain containing 1
chr9_-_50535949 3.122 NM_178118
Dixdc1
DIX domain containing 1

Gene Ontology Analysis

Gene overrepresentation in process category:

enrichment p-value GO term description
9.90 4.55e-05 GO:0060271 cilium morphogenesis
11.66 4.76e-05 GO:0042384 cilium assembly
6.48 2.79e-03 GO:0010927 cellular component assembly involved in morphogenesis
5.61 3.76e-03 GO:0030031 cell projection assembly
2.59 2.03e-02 GO:0030030 cell projection organization
3.02 3.04e-02 GO:0048858 cell projection morphogenesis
2.96 3.94e-02 GO:0032990 cell part morphogenesis

Gene overrepresentation in compartment category:

enrichment p-value GO term description
5.23 2.39e-06 GO:0005929 cilium
3.64 2.93e-04 GO:0005874 microtubule
2.47 3.42e-03 GO:0015630 microtubule cytoskeleton
10.45 3.82e-03 GO:0030119 AP-type membrane coat adaptor complex
10.45 3.82e-03 GO:0030131 clathrin adaptor complex
1.26 6.92e-03 GO:0005737 cytoplasm
1.92 1.23e-02 GO:0042995 cell projection
1.78 1.28e-02 GO:0005856 cytoskeleton
7.77 2.22e-02 GO:0030118 clathrin coat
1.18 2.79e-02 GO:0005622 intracellular

Nothing significant found in function category.