Motif ID: Hoxd9

Z-value: 0.677


Transcription factors associated with Hoxd9:

Gene SymbolEntrez IDGene Name
Hoxd9 ENSMUSG00000043342.8 Hoxd9



Activity profile for motif Hoxd9.

activity profile for motif Hoxd9


Sorted Z-values histogram for motif Hoxd9

Sorted Z-values for motif Hoxd9



Network of associatons between targets according to the STRING database.



First level regulatory network of Hoxd9

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr3_+_114030532 1.491 ENSMUST00000123619.1
ENSMUST00000092155.5
 Col11a1

collagen, type XI, alpha 1

chr12_+_38783503 1.485 ENSMUST00000159334.1
 Etv1
ets variant gene 1
chr7_+_66365905 1.389 ENSMUST00000107486.1
 Gm10974
predicted gene 10974
chr5_-_77408034 1.293 ENSMUST00000163898.1
ENSMUST00000046746.6
 Igfbp7

insulin-like growth factor binding protein 7

chr15_-_65014904 1.172 ENSMUST00000110100.2
 Gm21961
predicted gene, 21961
chr13_-_41273977 1.073 ENSMUST00000163881.1
 Gm17364
predicted gene, 17364
chr8_+_66386292 1.043 ENSMUST00000039540.5
ENSMUST00000110253.2
 March1

membrane-associated ring finger (C3HC4) 1

chr12_+_77238093 1.029 ENSMUST00000177595.1
ENSMUST00000171770.2
 Fut8

fucosyltransferase 8

chrM_+_11734 0.959 ENSMUST00000082418.1
 mt-Nd5
mitochondrially encoded NADH dehydrogenase 5
chr1_-_128102412 0.953 ENSMUST00000112538.1
ENSMUST00000086614.5
 Zranb3

zinc finger, RAN-binding domain containing 3

chr1_+_167598450 0.936 ENSMUST00000111386.1
ENSMUST00000111384.1
 Rxrg

retinoid X receptor gamma

chr1_-_140183404 0.922 ENSMUST00000066859.6
ENSMUST00000111976.2
 Cfh

complement component factor h

chr10_+_75037066 0.868 ENSMUST00000147802.1
ENSMUST00000020391.5
 Rab36

RAB36, member RAS oncogene family

chrX_+_82948861 0.838 ENSMUST00000114000.1
 Dmd
dystrophin, muscular dystrophy
chr3_+_35754121 0.802 ENSMUST00000108186.1
ENSMUST00000029257.8
 Atp11b

ATPase, class VI, type 11B

chr13_-_74376566 0.796 ENSMUST00000091481.2
 Zfp72
zinc finger protein 72
chr2_-_116064721 0.783 ENSMUST00000110906.2
 Meis2
Meis homeobox 2
chr11_+_29373618 0.781 ENSMUST00000040182.6
ENSMUST00000109477.1
 Ccdc88a

coiled coil domain containing 88A

chr19_-_29753600 0.729 ENSMUST00000175764.1
 9930021J03Rik
RIKEN cDNA 9930021J03 gene
chr12_+_36314160 0.710 ENSMUST00000041407.5
 Sostdc1
sclerostin domain containing 1
chr2_-_63184253 0.705 ENSMUST00000075052.3
ENSMUST00000112454.1
 Kcnh7

potassium voltage-gated channel, subfamily H (eag-related), member 7

chr5_-_62766153 0.693 ENSMUST00000076623.4
 Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr2_+_125136692 0.672 ENSMUST00000099452.2
 Ctxn2
cortexin 2
chr1_+_167598384 0.577 ENSMUST00000015987.3
 Rxrg
retinoid X receptor gamma
chr16_-_45693658 0.541 ENSMUST00000114562.2
ENSMUST00000036617.7
 Tmprss7

transmembrane serine protease 7

chr5_-_69590783 0.529 ENSMUST00000173927.1
 Gnpda2
glucosamine-6-phosphate deaminase 2
chr1_-_97761538 0.522 ENSMUST00000171129.1
 Ppip5k2
diphosphoinositol pentakisphosphate kinase 2
chr16_-_65562686 0.508 ENSMUST00000004965.6
 Chmp2b
charged multivesicular body protein 2B
chr4_+_136143497 0.504 ENSMUST00000008016.2
 Id3
inhibitor of DNA binding 3
chr7_-_14562171 0.492 ENSMUST00000181796.1
 Vmn1r90
vomeronasal 1 receptor 90
chr17_-_78684262 0.470 ENSMUST00000145480.1
 Strn
striatin, calmodulin binding protein
chr2_-_84425258 0.465 ENSMUST00000074262.2
 Calcrl
calcitonin receptor-like
chrX_-_111697069 0.458 ENSMUST00000113422.2
ENSMUST00000038472.5
 Hdx

highly divergent homeobox

chr7_+_127800604 0.449 ENSMUST00000046863.5
ENSMUST00000106272.1
ENSMUST00000139068.1
 Hsd3b7


hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7


chr3_-_65958236 0.446 ENSMUST00000029416.7
 Ccnl1
cyclin L1
chr13_-_105271039 0.419 ENSMUST00000069686.6
 Rnf180
ring finger protein 180
chr3_+_32436376 0.408 ENSMUST00000108242.1
 Pik3ca
phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
chrX_+_85048309 0.402 ENSMUST00000113991.1
ENSMUST00000113992.2
 Dmd

dystrophin, muscular dystrophy

chr1_+_180111339 0.399 ENSMUST00000145181.1
 Cdc42bpa
CDC42 binding protein kinase alpha
chr15_+_39006272 0.389 ENSMUST00000179165.1
ENSMUST00000022906.7
 Fzd6

frizzled homolog 6 (Drosophila)

chrX_-_134111852 0.377 ENSMUST00000033610.6
 Nox1
NADPH oxidase 1
chr16_+_92292380 0.373 ENSMUST00000047383.3
 Kcne2
potassium voltage-gated channel, Isk-related subfamily, gene 2
chr2_-_37647199 0.368 ENSMUST00000028279.3
 Strbp
spermatid perinuclear RNA binding protein
chr19_+_46689902 0.354 ENSMUST00000074912.7
 2010012O05Rik
RIKEN cDNA 2010012O05 gene
chr7_+_30565410 0.348 ENSMUST00000043850.7
 Igflr1
IGF-like family receptor 1
chr6_-_36811361 0.312 ENSMUST00000101534.1
 Ptn
pleiotrophin
chr19_+_23723279 0.311 ENSMUST00000067077.1
 Gm9938
predicted gene 9938
chr15_+_16778101 0.310 ENSMUST00000026432.6
 Cdh9
cadherin 9
chr12_+_59129720 0.305 ENSMUST00000175912.1
ENSMUST00000176892.1
 Ctage5

CTAGE family, member 5

chr14_-_36919314 0.295 ENSMUST00000182797.1
 Ccser2
coiled-coil serine rich 2
chr1_-_175491130 0.281 ENSMUST00000027812.5
 Rgs7
regulator of G protein signaling 7
chr9_-_64172879 0.268 ENSMUST00000176299.1
ENSMUST00000130127.1
ENSMUST00000176794.1
ENSMUST00000177045.1
 Zwilch



zwilch kinetochore protein



chr6_+_11925869 0.261 ENSMUST00000115510.1
ENSMUST00000115511.2
ENSMUST00000090632.4
 Phf14


PHD finger protein 14


chr16_+_44943737 0.260 ENSMUST00000114622.3
ENSMUST00000166731.1
 Cd200r3

CD200 receptor 3

chr16_+_20696175 0.252 ENSMUST00000128273.1
 Fam131a
family with sequence similarity 131, member A
chr12_+_59129757 0.248 ENSMUST00000069430.8
ENSMUST00000177370.1
 Ctage5

CTAGE family, member 5

chr1_-_24612700 0.239 ENSMUST00000088336.1
 Gm10222
predicted gene 10222
chr5_+_63812447 0.226 ENSMUST00000081747.3
 0610040J01Rik
RIKEN cDNA 0610040J01 gene
chr1_+_49244616 0.225 ENSMUST00000056879.8
 C230029F24Rik
RIKEN cDNA C230029F24 gene
chr12_+_102128718 0.217 ENSMUST00000159329.1
 Slc24a4
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr16_+_10835046 0.217 ENSMUST00000037913.8
 Rmi2
RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)
chr18_-_78206408 0.215 ENSMUST00000163367.1
 Slc14a2
solute carrier family 14 (urea transporter), member 2
chr2_-_175131864 0.206 ENSMUST00000108929.2
 Gm14399
predicted gene 14399
chr18_+_37400845 0.204 ENSMUST00000057228.1
 Pcdhb9
protocadherin beta 9
chr2_+_91526756 0.199 ENSMUST00000111338.3
 Ckap5
cytoskeleton associated protein 5
chr5_-_113310729 0.198 ENSMUST00000112325.1
ENSMUST00000048112.6
 Sgsm1

small G protein signaling modulator 1

chrX_-_10216918 0.197 ENSMUST00000072393.2
ENSMUST00000044598.6
ENSMUST00000073392.4
ENSMUST00000115533.1
ENSMUST00000115532.1
 Rpgr




retinitis pigmentosa GTPase regulator




chr9_-_96437434 0.185 ENSMUST00000070500.2
 BC043934
cDNA sequence BC043934
chr7_-_16286744 0.180 ENSMUST00000150528.2
ENSMUST00000118976.2
ENSMUST00000146609.2
 Ccdc9


coiled-coil domain containing 9


chr3_-_49757257 0.178 ENSMUST00000035931.7
 Pcdh18
protocadherin 18
chr7_-_34313531 0.176 ENSMUST00000108074.1
 4931406P16Rik
RIKEN cDNA 4931406P16 gene
chr1_+_183388981 0.149 ENSMUST00000097043.5
 Taf1a
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
chr3_-_66296807 0.135 ENSMUST00000029419.7
 Veph1
ventricular zone expressed PH domain-containing 1
chr5_-_113310697 0.130 ENSMUST00000154248.1
 Sgsm1
small G protein signaling modulator 1
chr2_+_11172080 0.129 ENSMUST00000114853.1
 Prkcq
protein kinase C, theta
chr2_+_155751117 0.127 ENSMUST00000029140.5
ENSMUST00000132608.1
 Procr

protein C receptor, endothelial

chr9_-_78109020 0.125 ENSMUST00000001402.7
 Fbxo9
f-box protein 9
chr8_-_41016295 0.119 ENSMUST00000131965.1
 Mtus1
mitochondrial tumor suppressor 1
chr19_-_56548122 0.108 ENSMUST00000026063.5
ENSMUST00000182276.1
 Dclre1a

DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)

chr2_-_63184170 0.106 ENSMUST00000112452.1
 Kcnh7
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr14_-_118923070 0.103 ENSMUST00000047208.5
 Dzip1
DAZ interacting protein 1
chr6_+_48537560 0.100 ENSMUST00000040361.5
 Atp6v0e2
ATPase, H+ transporting, lysosomal V0 subunit E2
chr9_+_78051938 0.083 ENSMUST00000024104.7
 Gcm1
glial cells missing homolog 1 (Drosophila)
chr2_-_45117349 0.081 ENSMUST00000176438.2
 Zeb2
zinc finger E-box binding homeobox 2
chr9_-_39604124 0.080 ENSMUST00000042485.4
ENSMUST00000141370.1
 AW551984

expressed sequence AW551984

chr2_+_30952955 0.078 ENSMUST00000028199.5
 Tor1b
torsin family 1, member B
chr14_-_75754475 0.075 ENSMUST00000049168.7
 Cog3
component of oligomeric golgi complex 3
chr11_-_109472611 0.054 ENSMUST00000168740.1
 Slc16a6
solute carrier family 16 (monocarboxylic acid transporters), member 6
chr3_+_53845086 0.034 ENSMUST00000108014.1
 Gm10985
predicted gene 10985
chr13_+_58281183 0.033 ENSMUST00000180882.1
ENSMUST00000180452.1
 Gm26555

predicted gene, 26555

chr8_+_84723003 0.027 ENSMUST00000098571.4
 G430095P16Rik
RIKEN cDNA G430095P16 gene
chr1_-_162898665 0.022 ENSMUST00000111510.1
ENSMUST00000045902.6
 Fmo2

flavin containing monooxygenase 2

chr3_+_103171655 0.018 ENSMUST00000005830.8
 Bcas2
breast carcinoma amplified sequence 2
chr1_-_139377041 0.006 ENSMUST00000059825.5
 Crb1
crumbs homolog 1 (Drosophila)
chrX_+_114474312 0.005 ENSMUST00000113371.1
ENSMUST00000040504.5
 Klhl4

kelch-like 4

chr8_+_71887264 0.000 ENSMUST00000034259.7
 Zfp709
zinc finger protein 709

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 GO:0008065 establishment of blood-nerve barrier(GO:0008065) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
0.3 1.0 GO:0046368 GDP-L-fucose metabolic process(GO:0046368)
0.3 1.0 GO:0036292 DNA rewinding(GO:0036292)
0.2 1.5 GO:0035989 tendon development(GO:0035989)
0.2 0.9 GO:0006957 complement activation, alternative pathway(GO:0006957)
0.1 0.4 GO:0044028 DNA hypomethylation(GO:0044028) hypomethylation of CpG island(GO:0044029)
0.1 0.4 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)
0.1 0.7 GO:0060648 mammary gland bud morphogenesis(GO:0060648)
0.1 0.5 GO:0034285 response to sucrose(GO:0009744) response to disaccharide(GO:0034285)
0.1 0.8 GO:0044791 modulation by host of viral release from host cell(GO:0044789) positive regulation by host of viral release from host cell(GO:0044791)
0.1 0.3 GO:1904395 regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904393) positive regulation of skeletal muscle acetylcholine-gated channel clustering(GO:1904395)
0.1 0.4 GO:0072592 oxygen metabolic process(GO:0072592)
0.1 0.4 GO:0098915 membrane repolarization during ventricular cardiac muscle cell action potential(GO:0098915)
0.1 0.5 GO:0006046 N-acetylglucosamine catabolic process(GO:0006046)
0.1 0.3 GO:0035790 platelet-derived growth factor receptor-alpha signaling pathway(GO:0035790)
0.1 1.9 GO:0007638 mechanosensory behavior(GO:0007638)
0.1 1.0 GO:0002495 antigen processing and presentation of peptide antigen via MHC class II(GO:0002495)
0.0 0.4 GO:0016127 cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127)
0.0 0.4 GO:1901409 regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901407) positive regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901409)
0.0 1.5 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.0 0.1 GO:2000569 T-helper 2 cell activation(GO:0035712) positive regulation of T-helper 17 type immune response(GO:2000318) regulation of T-helper 2 cell activation(GO:2000569) positive regulation of T-helper 2 cell activation(GO:2000570)
0.0 0.2 GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity(GO:0030951)
0.0 0.5 GO:1901673 regulation of mitotic spindle assembly(GO:1901673)
0.0 0.4 GO:0042415 norepinephrine metabolic process(GO:0042415)
0.0 0.8 GO:0032148 activation of protein kinase B activity(GO:0032148)
0.0 0.2 GO:0015840 urea transport(GO:0015840) urea transmembrane transport(GO:0071918)
0.0 0.5 GO:0071398 cellular response to fatty acid(GO:0071398)
0.0 0.2 GO:0097186 amelogenesis(GO:0097186)
0.0 0.4 GO:0007097 nuclear migration(GO:0007097)
0.0 0.1 GO:0060923 cardiac muscle cell fate commitment(GO:0060923)
0.0 1.3 GO:0050810 regulation of steroid biosynthetic process(GO:0050810)
0.0 0.1 GO:0060018 astrocyte fate commitment(GO:0060018)
0.0 0.5 GO:0042773 ATP synthesis coupled electron transport(GO:0042773)
0.0 0.1 GO:1903056 regulation of lens fiber cell differentiation(GO:1902746) positive regulation of lens fiber cell differentiation(GO:1902748) regulation of melanosome organization(GO:1903056)
0.0 0.8 GO:0008542 visual learning(GO:0008542)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0005943 phosphatidylinositol 3-kinase complex, class IA(GO:0005943)
0.1 1.5 GO:0098643 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.1 0.4 GO:0071438 NADPH oxidase complex(GO:0043020) invadopodium membrane(GO:0071438)
0.1 0.3 GO:1990423 RZZ complex(GO:1990423)
0.1 1.0 GO:0032580 Golgi cisterna membrane(GO:0032580)
0.1 1.2 GO:0031527 filopodium membrane(GO:0031527)
0.0 1.0 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 0.1 GO:0000120 RNA polymerase I transcription factor complex(GO:0000120)
0.0 0.5 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.2 GO:0000815 ESCRT III complex(GO:0000815)
0.0 1.0 GO:0043596 nuclear replication fork(GO:0043596)
0.0 0.4 GO:0016327 apicolateral plasma membrane(GO:0016327)
0.0 0.3 GO:0044292 dendrite terminus(GO:0044292)
0.0 0.4 GO:0005911 cell-cell junction(GO:0005911)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.9 GO:0001851 complement component C3b binding(GO:0001851)
0.2 1.5 GO:0004886 9-cis retinoic acid receptor activity(GO:0004886)
0.1 0.5 GO:0000832 inositol hexakisphosphate kinase activity(GO:0000828) inositol hexakisphosphate 5-kinase activity(GO:0000832) inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.1 0.4 GO:0030171 voltage-gated proton channel activity(GO:0030171)
0.1 0.4 GO:1902282 voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization(GO:1902282)
0.1 0.5 GO:0097642 calcitonin family receptor activity(GO:0097642)
0.1 0.5 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.1 0.3 GO:0035373 chondroitin sulfate proteoglycan binding(GO:0035373)
0.1 1.0 GO:0036310 annealing helicase activity(GO:0036310)
0.1 0.4 GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854)
0.1 1.2 GO:0017166 dystroglycan binding(GO:0002162) vinculin binding(GO:0017166)
0.1 1.3 GO:0005520 insulin-like growth factor binding(GO:0005520)
0.1 1.0 GO:0042287 MHC protein binding(GO:0042287)
0.1 0.4 GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity(GO:0046934)
0.0 0.7 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.2 GO:0008273 calcium, potassium:sodium antiporter activity(GO:0008273)
0.0 1.5 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.0 0.8 GO:0004012 phospholipid-translocating ATPase activity(GO:0004012)
0.0 0.2 GO:0015265 urea channel activity(GO:0015265)
0.0 0.8 GO:0043422 protein kinase B binding(GO:0043422)
0.0 1.0 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.4 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.5 GO:0070016 armadillo repeat domain binding(GO:0070016)
0.0 0.3 GO:0031681 G-protein beta-subunit binding(GO:0031681)
0.0 0.5 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.4 GO:0031624 ubiquitin conjugating enzyme binding(GO:0031624)