Motif ID: Hoxd9

Z-value: 0.677


Transcription factors associated with Hoxd9:

Gene SymbolEntrez IDGene Name
Hoxd9 ENSMUSG00000043342.8 Hoxd9



Activity profile for motif Hoxd9.

activity profile for motif Hoxd9


Sorted Z-values histogram for motif Hoxd9

Sorted Z-values for motif Hoxd9



Network of associatons between targets according to the STRING database.



First level regulatory network of Hoxd9

PNG image of the network

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Top targets:


Showing 1 to 20 of 96 entries
PromoterScoreRefseqGene SymbolGene Name
chr3_+_114030532 1.491 ENSMUST00000123619.1
ENSMUST00000092155.5
 Col11a1

collagen, type XI, alpha 1

chr12_+_38783503 1.485 ENSMUST00000159334.1
 Etv1
ets variant gene 1
chr7_+_66365905 1.389 ENSMUST00000107486.1
 Gm10974
predicted gene 10974
chr5_-_77408034 1.293 ENSMUST00000163898.1
ENSMUST00000046746.6
 Igfbp7

insulin-like growth factor binding protein 7

chr15_-_65014904 1.172 ENSMUST00000110100.2
 Gm21961
predicted gene, 21961
chr13_-_41273977 1.073 ENSMUST00000163881.1
 Gm17364
predicted gene, 17364
chr8_+_66386292 1.043 ENSMUST00000039540.5
ENSMUST00000110253.2
 March1

membrane-associated ring finger (C3HC4) 1

chr12_+_77238093 1.029 ENSMUST00000177595.1
ENSMUST00000171770.2
 Fut8

fucosyltransferase 8

chrM_+_11734 0.959 ENSMUST00000082418.1
 mt-Nd5
mitochondrially encoded NADH dehydrogenase 5
chr1_-_128102412 0.953 ENSMUST00000112538.1
ENSMUST00000086614.5
 Zranb3

zinc finger, RAN-binding domain containing 3

chr1_+_167598450 0.936 ENSMUST00000111386.1
ENSMUST00000111384.1
 Rxrg

retinoid X receptor gamma

chr1_-_140183404 0.922 ENSMUST00000066859.6
ENSMUST00000111976.2
 Cfh

complement component factor h

chr10_+_75037066 0.868 ENSMUST00000147802.1
ENSMUST00000020391.5
 Rab36

RAB36, member RAS oncogene family

chrX_+_82948861 0.838 ENSMUST00000114000.1
 Dmd
dystrophin, muscular dystrophy
chr3_+_35754121 0.802 ENSMUST00000108186.1
ENSMUST00000029257.8
 Atp11b

ATPase, class VI, type 11B

chr13_-_74376566 0.796 ENSMUST00000091481.2
 Zfp72
zinc finger protein 72
chr2_-_116064721 0.783 ENSMUST00000110906.2
 Meis2
Meis homeobox 2
chr11_+_29373618 0.781 ENSMUST00000040182.6
ENSMUST00000109477.1
 Ccdc88a

coiled coil domain containing 88A

chr19_-_29753600 0.729 ENSMUST00000175764.1
 9930021J03Rik
RIKEN cDNA 9930021J03 gene
chr12_+_36314160 0.710 ENSMUST00000041407.5
 Sostdc1
sclerostin domain containing 1

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Showing 1 to 20 of 35 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.1 1.9 GO:0007638 mechanosensory behavior(GO:0007638)
0.2 1.5 GO:0035989 tendon development(GO:0035989)
0.0 1.5 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.0 1.3 GO:0050810 regulation of steroid biosynthetic process(GO:0050810)
0.4 1.2 GO:0008065 establishment of blood-nerve barrier(GO:0008065) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
0.3 1.0 GO:0046368 GDP-L-fucose metabolic process(GO:0046368)
0.3 1.0 GO:0036292 DNA rewinding(GO:0036292)
0.1 1.0 GO:0002495 antigen processing and presentation of peptide antigen via MHC class II(GO:0002495)
0.2 0.9 GO:0006957 complement activation, alternative pathway(GO:0006957)
0.1 0.8 GO:0044791 modulation by host of viral release from host cell(GO:0044789) positive regulation by host of viral release from host cell(GO:0044791)
0.0 0.8 GO:0032148 activation of protein kinase B activity(GO:0032148)
0.0 0.8 GO:0008542 visual learning(GO:0008542)
0.1 0.7 GO:0060648 mammary gland bud morphogenesis(GO:0060648)
0.1 0.5 GO:0034285 response to sucrose(GO:0009744) response to disaccharide(GO:0034285)
0.1 0.5 GO:0006046 N-acetylglucosamine catabolic process(GO:0006046)
0.0 0.5 GO:1901673 regulation of mitotic spindle assembly(GO:1901673)
0.0 0.5 GO:0071398 cellular response to fatty acid(GO:0071398)
0.0 0.5 GO:0042773 ATP synthesis coupled electron transport(GO:0042773)
0.1 0.4 GO:0044028 DNA hypomethylation(GO:0044028) hypomethylation of CpG island(GO:0044029)
0.1 0.4 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)

Gene overrepresentation in cellular_component category:

Showing 1 to 14 of 14 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.1 1.5 GO:0098643 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.1 1.2 GO:0031527 filopodium membrane(GO:0031527)
0.1 1.0 GO:0032580 Golgi cisterna membrane(GO:0032580)
0.0 1.0 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.0 1.0 GO:0043596 nuclear replication fork(GO:0043596)
0.0 0.5 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.1 0.4 GO:0005943 phosphatidylinositol 3-kinase complex, class IA(GO:0005943)
0.1 0.4 GO:0071438 NADPH oxidase complex(GO:0043020) invadopodium membrane(GO:0071438)
0.0 0.4 GO:0016327 apicolateral plasma membrane(GO:0016327)
0.0 0.4 GO:0005911 cell-cell junction(GO:0005911)
0.1 0.3 GO:1990423 RZZ complex(GO:1990423)
0.0 0.3 GO:0044292 dendrite terminus(GO:0044292)
0.0 0.2 GO:0000815 ESCRT III complex(GO:0000815)
0.0 0.1 GO:0000120 RNA polymerase I transcription factor complex(GO:0000120)

Gene overrepresentation in molecular_function category:

Showing 1 to 20 of 26 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.2 1.5 GO:0004886 9-cis retinoic acid receptor activity(GO:0004886)
0.0 1.5 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.1 1.3 GO:0005520 insulin-like growth factor binding(GO:0005520)
0.1 1.2 GO:0017166 dystroglycan binding(GO:0002162) vinculin binding(GO:0017166)
0.1 1.0 GO:0036310 annealing helicase activity(GO:0036310)
0.1 1.0 GO:0042287 MHC protein binding(GO:0042287)
0.0 1.0 GO:0050136 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.3 0.9 GO:0001851 complement component C3b binding(GO:0001851)
0.0 0.8 GO:0004012 phospholipid-translocating ATPase activity(GO:0004012)
0.0 0.8 GO:0043422 protein kinase B binding(GO:0043422)
0.0 0.7 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.1 0.5 GO:0000832 inositol hexakisphosphate kinase activity(GO:0000828) inositol hexakisphosphate 5-kinase activity(GO:0000832) inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.1 0.5 GO:0097642 calcitonin family receptor activity(GO:0097642)
0.1 0.5 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.0 0.5 GO:0070016 armadillo repeat domain binding(GO:0070016)
0.0 0.5 GO:0005504 fatty acid binding(GO:0005504)
0.1 0.4 GO:0030171 voltage-gated proton channel activity(GO:0030171)
0.1 0.4 GO:1902282 voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization(GO:1902282)
0.1 0.4 GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854)
0.1 0.4 GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity(GO:0046934)