Motif ID: Rara

Z-value: 0.498


Transcription factors associated with Rara:

Gene SymbolEntrez IDGene Name
Rara ENSMUSG00000037992.10 Rara

Activity-expression correlation:

Gene SymbolPromoterPearson corr. coef.P-valuePlot
Raramm10_v2_chr11_+_98960412_98960485-0.224.5e-01Click!


Activity profile for motif Rara.

activity profile for motif Rara


Sorted Z-values histogram for motif Rara

Sorted Z-values for motif Rara



Network of associatons between targets according to the STRING database.



First level regulatory network of Rara

PNG image of the network

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Top targets:


Showing 1 to 20 of 69 entries
PromoterScoreRefseqGene SymbolGene Name
chr4_-_141599835 0.742 ENSMUST00000141518.1
ENSMUST00000127455.1
ENSMUST00000105784.1
ENSMUST00000147785.1
 Fblim1



filamin binding LIM protein 1



chr6_+_114131229 0.724 ENSMUST00000032451.7
 Slc6a11
solute carrier family 6 (neurotransmitter transporter, GABA), member 11
chr1_-_175692624 0.441 ENSMUST00000027809.7
 Opn3
opsin 3
chr3_-_54915867 0.408 ENSMUST00000070342.3
 Sertm1
serine rich and transmembrane domain containing 1
chr6_+_30723541 0.402 ENSMUST00000115127.1
 Mest
mesoderm specific transcript
chr1_+_134037490 0.401 ENSMUST00000162779.1
 Fmod
fibromodulin
chr10_+_21993890 0.386 ENSMUST00000092673.4
 Sgk1
serum/glucocorticoid regulated kinase 1
chrX_-_59567348 0.379 ENSMUST00000124402.1
 Fgf13
fibroblast growth factor 13
chr10_+_4611971 0.326 ENSMUST00000105590.1
ENSMUST00000067086.7
 Esr1

estrogen receptor 1 (alpha)

chr2_+_169633517 0.256 ENSMUST00000109157.1
 Tshz2
teashirt zinc finger family member 2
chr13_+_94875600 0.256 ENSMUST00000022195.10
 Otp
orthopedia homolog (Drosophila)
chr6_+_18848571 0.255 ENSMUST00000056398.8
 Naa38
N(alpha)-acetyltransferase 38, NatC auxiliary subunit
chr4_-_46991842 0.223 ENSMUST00000107749.2
 Gabbr2
gamma-aminobutyric acid (GABA) B receptor, 2
chr14_+_76488436 0.206 ENSMUST00000101618.2
 Tsc22d1
TSC22 domain family, member 1
chr12_-_108893197 0.197 ENSMUST00000161154.1
ENSMUST00000161410.1
 Wars

tryptophanyl-tRNA synthetase

chrX_+_74254736 0.185 ENSMUST00000096424.4
 Emd
emerin
chrX_+_106187100 0.179 ENSMUST00000081593.6
 Pgk1
phosphoglycerate kinase 1
chr11_+_94629741 0.170 ENSMUST00000021239.6
 Lrrc59
leucine rich repeat containing 59
chr14_+_58070547 0.166 ENSMUST00000165526.1
 Fgf9
fibroblast growth factor 9
chr14_-_70207637 0.163 ENSMUST00000022682.5
 Sorbs3
sorbin and SH3 domain containing 3

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Showing 1 to 20 of 25 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.1 0.7 GO:0033623 regulation of integrin activation(GO:0033623)
0.0 0.7 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.1 0.4 GO:0018298 protein-chromophore linkage(GO:0018298)
0.1 0.4 GO:0045200 establishment or maintenance of neuroblast polarity(GO:0045196) establishment of neuroblast polarity(GO:0045200)
0.0 0.4 GO:0043402 glucocorticoid mediated signaling pathway(GO:0043402)
0.0 0.4 GO:0010883 regulation of lipid storage(GO:0010883)
0.0 0.4 GO:0030199 collagen fibril organization(GO:0030199)
0.1 0.3 GO:0060745 mammary gland branching involved in pregnancy(GO:0060745)
0.0 0.3 GO:0021979 hypothalamus cell differentiation(GO:0021979)
0.0 0.3 GO:0035414 negative regulation of catenin import into nucleus(GO:0035414)
0.1 0.2 GO:0006436 tryptophanyl-tRNA aminoacylation(GO:0006436)
0.1 0.2 GO:0021933 radial glia guided migration of cerebellar granule cell(GO:0021933)
0.1 0.2 GO:0042536 negative regulation of tumor necrosis factor biosynthetic process(GO:0042536)
0.0 0.2 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.2 GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c(GO:0006122)
0.0 0.2 GO:0003214 cardiac left ventricle morphogenesis(GO:0003214) male sex determination(GO:0030238) lung-associated mesenchyme development(GO:0060484)
0.0 0.2 GO:0007214 gamma-aminobutyric acid signaling pathway(GO:0007214)
0.0 0.1 GO:0002606 positive regulation of dendritic cell antigen processing and presentation(GO:0002606)
0.0 0.1 GO:0003406 retinal pigment epithelium development(GO:0003406)
0.0 0.1 GO:0072554 blood vessel lumenization(GO:0072554)

Gene overrepresentation in cellular_component category:

Showing 1 to 6 of 6 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.1 0.3 GO:0031417 NatC complex(GO:0031417)
0.0 0.3 GO:0035327 transcriptionally active chromatin(GO:0035327)
0.0 0.3 GO:0005652 nuclear lamina(GO:0005652)
0.0 0.2 GO:0038039 G-protein coupled receptor heterodimeric complex(GO:0038039)
0.0 0.2 GO:0005750 mitochondrial respiratory chain complex III(GO:0005750)
0.0 0.1 GO:0002193 MAML1-RBP-Jkappa- ICN1 complex(GO:0002193)

Gene overrepresentation in molecular_function category:

Showing 1 to 14 of 14 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.2 0.7 GO:0005332 gamma-aminobutyric acid:sodium symporter activity(GO:0005332)
0.0 0.7 GO:0031005 filamin binding(GO:0031005)
0.0 0.6 GO:0048487 beta-tubulin binding(GO:0048487)
0.1 0.4 GO:0009881 photoreceptor activity(GO:0009881)
0.0 0.4 GO:0043423 3-phosphoinositide-dependent protein kinase binding(GO:0043423)
0.0 0.4 GO:0052771 coenzyme F390-A hydrolase activity(GO:0052770) coenzyme F390-G hydrolase activity(GO:0052771)
0.1 0.3 GO:0031798 type 1 metabotropic glutamate receptor binding(GO:0031798) RNA polymerase II transcription factor activity, estrogen-activated sequence-specific DNA binding(GO:0038052)
0.1 0.2 GO:0004830 tryptophan-tRNA ligase activity(GO:0004830)
0.1 0.2 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.2 GO:0016774 phosphotransferase activity, carboxyl group as acceptor(GO:0016774)
0.0 0.2 GO:0004965 G-protein coupled GABA receptor activity(GO:0004965)
0.0 0.1 GO:0050700 CARD domain binding(GO:0050700)
0.0 0.1 GO:0015183 L-aspartate transmembrane transporter activity(GO:0015183)
0.0 0.1 GO:0001206 transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding(GO:0001206)