Motif ID: Runx3

Z-value: 0.765


Transcription factors associated with Runx3:

Gene SymbolEntrez IDGene Name
Runx3 ENSMUSG00000070691.4 Runx3



Activity profile for motif Runx3.

activity profile for motif Runx3


Sorted Z-values histogram for motif Runx3

Sorted Z-values for motif Runx3



Network of associatons between targets according to the STRING database.



First level regulatory network of Runx3

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr15_+_40655020 3.133 ENSMUST00000053467.4
Zfpm2
zinc finger protein, multitype 2
chr3_+_121953213 2.646 ENSMUST00000037958.7
ENSMUST00000128366.1
Arhgap29

Rho GTPase activating protein 29

chr18_-_47368446 1.559 ENSMUST00000076043.6
ENSMUST00000135790.1
Sema6a

sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A

chrX_-_73869804 1.152 ENSMUST00000066576.5
ENSMUST00000114430.1
L1cam

L1 cell adhesion molecule

chr11_+_75532127 1.152 ENSMUST00000127226.1
Slc43a2
solute carrier family 43, member 2
chr11_+_75532099 1.150 ENSMUST00000169547.2
Slc43a2
solute carrier family 43, member 2
chr5_+_21424934 1.114 ENSMUST00000056045.4
Fam185a
family with sequence similarity 185, member A
chr13_-_51734695 1.021 ENSMUST00000110039.1
Sema4d
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
chr7_+_35802593 1.014 ENSMUST00000052454.2
E130304I02Rik
RIKEN cDNA E130304I02 gene
chr1_-_24100306 0.909 ENSMUST00000027337.8
Fam135a
family with sequence similarity 135, member A
chr6_-_100671126 0.810 ENSMUST00000089245.6
ENSMUST00000113312.2
ENSMUST00000170667.1
Shq1


SHQ1 homolog (S. cerevisiae)


chr10_+_128083273 0.789 ENSMUST00000026459.5
Atp5b
ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit
chr13_-_25020289 0.760 ENSMUST00000021772.2
Mrs2
MRS2 magnesium homeostasis factor homolog (S. cerevisiae)
chr7_-_35802968 0.698 ENSMUST00000061586.4
Zfp507
zinc finger protein 507
chrX_+_99136119 0.659 ENSMUST00000052839.6
Efnb1
ephrin B1
chr17_+_27556613 0.658 ENSMUST00000117600.1
ENSMUST00000114888.3
Hmga1

high mobility group AT-hook 1

chr17_+_27556641 0.654 ENSMUST00000119486.1
ENSMUST00000118599.1
Hmga1

high mobility group AT-hook 1

chr17_+_27556668 0.625 ENSMUST00000117254.1
ENSMUST00000118570.1
Hmga1

high mobility group AT-hook 1

chr10_-_62602261 0.613 ENSMUST00000045866.7
Ddx21
DEAD (Asp-Glu-Ala-Asp) box polypeptide 21
chrX_-_98890781 0.600 ENSMUST00000113826.1
ENSMUST00000033560.2
ENSMUST00000142267.1
Ophn1


oligophrenin 1


chr12_+_26469204 0.591 ENSMUST00000020969.3
Cmpk2
cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
chr11_-_5762358 0.566 ENSMUST00000120306.1
ENSMUST00000170116.1
ENSMUST00000053427.4
ENSMUST00000118076.1
Urgcp



upregulator of cell proliferation



chr4_-_133672601 0.520 ENSMUST00000062118.4
ENSMUST00000067902.6
Pigv

phosphatidylinositol glycan anchor biosynthesis, class V

chr11_-_23665862 0.508 ENSMUST00000020523.3
Pex13
peroxisomal biogenesis factor 13
chr8_+_27023793 0.489 ENSMUST00000033873.7
Erlin2
ER lipid raft associated 2
chr8_+_4243264 0.475 ENSMUST00000110996.1
Map2k7
mitogen-activated protein kinase kinase 7
chr10_-_81001338 0.468 ENSMUST00000099462.1
ENSMUST00000118233.1
Gng7

guanine nucleotide binding protein (G protein), gamma 7

chr7_+_141216626 0.458 ENSMUST00000141804.1
ENSMUST00000148975.1
Rassf7

Ras association (RalGDS/AF-6) domain family (N-terminal) member 7

chr17_+_8165501 0.450 ENSMUST00000097419.3
ENSMUST00000024636.8
Fgfr1op

Fgfr1 oncogene partner

chr15_+_8169067 0.448 ENSMUST00000110617.1
2410089E03Rik
RIKEN cDNA 2410089E03 gene
chr4_-_120570252 0.436 ENSMUST00000030381.7
Ctps
cytidine 5'-triphosphate synthase
chr3_+_95658771 0.431 ENSMUST00000178686.1
Mcl1
myeloid cell leukemia sequence 1
chr8_-_27128615 0.401 ENSMUST00000033877.4
Brf2
BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
chr9_+_109931774 0.364 ENSMUST00000169851.2
Map4
microtubule-associated protein 4
chr7_-_141437587 0.354 ENSMUST00000172654.1
ENSMUST00000106006.1
Slc25a22

solute carrier family 25 (mitochondrial carrier, glutamate), member 22

chr7_-_78783026 0.351 ENSMUST00000032841.5
Mrpl46
mitochondrial ribosomal protein L46
chr5_+_121397936 0.341 ENSMUST00000042163.8
Naa25
N(alpha)-acetyltransferase 25, NatB auxiliary subunit
chr11_-_70220794 0.335 ENSMUST00000159867.1
Slc16a13
solute carrier family 16 (monocarboxylic acid transporters), member 13
chr11_-_70410010 0.334 ENSMUST00000019065.3
ENSMUST00000135148.1
Pelp1

proline, glutamic acid and leucine rich protein 1

chr9_-_108094459 0.322 ENSMUST00000081309.7
Apeh
acylpeptide hydrolase
chr17_+_35879770 0.306 ENSMUST00000025292.8
Dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16
chr4_+_19575139 0.304 ENSMUST00000108253.1
ENSMUST00000029888.3
Rmdn1

regulator of microtubule dynamics 1

chr11_-_70220776 0.303 ENSMUST00000141290.1
Slc16a13
solute carrier family 16 (monocarboxylic acid transporters), member 13
chr11_-_86357570 0.299 ENSMUST00000043624.8
Med13
mediator complex subunit 13
chr5_-_25223153 0.284 ENSMUST00000066954.1
E130116L18Rik
RIKEN cDNA E130116L18 gene
chr3_+_122245557 0.282 ENSMUST00000029769.7
Gclm
glutamate-cysteine ligase, modifier subunit
chr9_+_106429537 0.279 ENSMUST00000059802.6
Rpl29
ribosomal protein L29
chr3_+_122245625 0.278 ENSMUST00000178826.1
Gclm
glutamate-cysteine ligase, modifier subunit
chr13_-_14063395 0.268 ENSMUST00000170957.1
Ggps1
geranylgeranyl diphosphate synthase 1
chr9_+_106429399 0.263 ENSMUST00000150576.1
Rpl29
ribosomal protein L29
chr17_+_30005029 0.257 ENSMUST00000057897.7
Zfand3
zinc finger, AN1-type domain 3
chr6_-_99632376 0.241 ENSMUST00000176255.1
Gm20696
predicted gene 20696
chr13_+_21735055 0.235 ENSMUST00000087714.4
Hist1h4j
histone cluster 1, H4j
chr3_+_95658714 0.233 ENSMUST00000037947.8
Mcl1
myeloid cell leukemia sequence 1
chr5_+_25222862 0.214 ENSMUST00000045737.7
Galnt11
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11
chr4_-_117887279 0.210 ENSMUST00000132073.1
Atp6v0b
ATPase, H+ transporting, lysosomal V0 subunit B
chr11_+_75679259 0.198 ENSMUST00000017920.7
ENSMUST00000108426.1
ENSMUST00000108425.1
ENSMUST00000093115.3
Crk



v-crk sarcoma virus CT10 oncogene homolog (avian)



chr8_-_54724474 0.197 ENSMUST00000175915.1
Wdr17
WD repeat domain 17
chr4_-_117887292 0.194 ENSMUST00000150204.1
ENSMUST00000147845.1
ENSMUST00000036380.7
ENSMUST00000136596.1
Atp6v0b



ATPase, H+ transporting, lysosomal V0 subunit B



chr13_-_76018524 0.177 ENSMUST00000050997.1
ENSMUST00000179078.1
ENSMUST00000167271.1
Rfesd


Rieske (Fe-S) domain containing


chr11_-_32267547 0.167 ENSMUST00000109389.2
ENSMUST00000129010.1
ENSMUST00000020530.5
Nprl3


nitrogen permease regulator-like 3


chr1_+_159232299 0.167 ENSMUST00000076894.5
Rfwd2
ring finger and WD repeat domain 2
chr14_-_72709534 0.166 ENSMUST00000162478.1
Fndc3a
fibronectin type III domain containing 3A
chr11_+_101009452 0.157 ENSMUST00000044721.6
ENSMUST00000103110.3
ENSMUST00000168757.2
Atp6v0a1


ATPase, H+ transporting, lysosomal V0 subunit A1


chr11_-_70220969 0.154 ENSMUST00000060010.2
Slc16a13
solute carrier family 16 (monocarboxylic acid transporters), member 13
chr18_-_77713978 0.146 ENSMUST00000074653.4
8030462N17Rik
RIKEN cDNA 8030462N17 gene
chr7_+_28808795 0.126 ENSMUST00000172529.1
Hnrnpl
heterogeneous nuclear ribonucleoprotein L
chr6_-_136804414 0.123 ENSMUST00000179285.1
Hist4h4
histone cluster 4, H4
chr4_-_70410422 0.118 ENSMUST00000144099.1
Cdk5rap2
CDK5 regulatory subunit associated protein 2
chr7_-_142095266 0.113 ENSMUST00000039926.3
Dusp8
dual specificity phosphatase 8
chr12_+_98628126 0.109 ENSMUST00000048402.5
ENSMUST00000101144.3
ENSMUST00000101146.3
Spata7


spermatogenesis associated 7


chr8_+_71908595 0.109 ENSMUST00000131544.1
ENSMUST00000110002.1
ENSMUST00000125802.1
Zfp617
Zfp882

zinc finger protein 617
zinc finger protein 882

chr7_+_78783119 0.105 ENSMUST00000032840.4
Mrps11
mitochondrial ribosomal protein S11
chr9_+_109931458 0.085 ENSMUST00000072772.5
ENSMUST00000035055.8
Map4

microtubule-associated protein 4

chr18_-_34651703 0.054 ENSMUST00000025228.5
ENSMUST00000133181.1
Cdc23

CDC23 cell division cycle 23

chr16_-_94526830 0.052 ENSMUST00000023615.6
Dscr3
Down syndrome critical region gene 3
chr9_+_109931863 0.042 ENSMUST00000165876.1
Map4
microtubule-associated protein 4
chr7_+_3617357 0.032 ENSMUST00000076657.4
ENSMUST00000108644.1
Ndufa3

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 3

chr12_-_98259416 0.029 ENSMUST00000021390.7
Galc
galactosylceramidase
chr2_-_50296680 0.023 ENSMUST00000144143.1
ENSMUST00000102769.4
ENSMUST00000133768.1
Mmadhc


methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria


chr9_-_78481724 0.007 ENSMUST00000042235.8
Eef1a1
eukaryotic translation elongation factor 1 alpha 1

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 3.1 GO:0003195 tricuspid valve development(GO:0003175) tricuspid valve morphogenesis(GO:0003186) tricuspid valve formation(GO:0003195) right ventricular cardiac muscle tissue morphogenesis(GO:0003221)
0.3 0.8 GO:0090071 negative regulation of ribosome biogenesis(GO:0090071)
0.3 1.0 GO:1900220 negative regulation of alkaline phosphatase activity(GO:0010693) semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis(GO:1900220)
0.2 0.8 GO:0006933 negative regulation of cell adhesion involved in substrate-bound cell migration(GO:0006933)
0.2 0.6 GO:0046077 dUDP biosynthetic process(GO:0006227) pyrimidine nucleoside diphosphate biosynthetic process(GO:0009139) pyrimidine deoxyribonucleoside diphosphate metabolic process(GO:0009196) pyrimidine deoxyribonucleoside diphosphate biosynthetic process(GO:0009197) dUDP metabolic process(GO:0046077)
0.2 0.7 GO:1903378 positive regulation of oxidative stress-induced neuron intrinsic apoptotic signaling pathway(GO:1903378)
0.1 1.2 GO:0033631 cell-cell adhesion mediated by integrin(GO:0033631)
0.1 0.5 GO:0001561 fatty acid alpha-oxidation(GO:0001561)
0.1 0.5 GO:0051012 microtubule sliding(GO:0051012) negative regulation of nonmotile primary cilium assembly(GO:1902856)
0.1 0.4 GO:1904491 protein localization to ciliary transition zone(GO:1904491)
0.1 1.6 GO:2001224 positive regulation of neuron migration(GO:2001224)
0.1 0.6 GO:0051409 response to nitrosative stress(GO:0051409)
0.1 0.5 GO:0045541 negative regulation of cholesterol biosynthetic process(GO:0045541) negative regulation of cholesterol metabolic process(GO:0090206)
0.0 0.3 GO:0017196 N-terminal peptidyl-methionine acetylation(GO:0017196)
0.0 0.8 GO:0015693 magnesium ion transport(GO:0015693)
0.0 0.5 GO:0007168 receptor guanylyl cyclase signaling pathway(GO:0007168)
0.0 0.4 GO:0046036 CTP biosynthetic process(GO:0006241) CTP metabolic process(GO:0046036)
0.0 0.5 GO:2000671 regulation of motor neuron apoptotic process(GO:2000671)
0.0 1.9 GO:0006284 base-excision repair(GO:0006284)
0.0 0.8 GO:0035873 lactate transport(GO:0015727) lactate transmembrane transport(GO:0035873) plasma membrane lactate transport(GO:0035879)
0.0 0.7 GO:0031295 lymphocyte costimulation(GO:0031294) T cell costimulation(GO:0031295)
0.0 2.7 GO:0015807 L-amino acid transport(GO:0015807)
0.0 0.6 GO:0007035 vacuolar acidification(GO:0007035)
0.0 0.2 GO:0018243 protein O-linked glycosylation via threonine(GO:0018243)
0.0 0.1 GO:1903546 protein localization to photoreceptor outer segment(GO:1903546)
0.0 0.2 GO:0071941 nitrate metabolic process(GO:0042126) nitrogen cycle metabolic process(GO:0071941)
0.0 0.4 GO:0034453 microtubule anchoring(GO:0034453)
0.0 0.6 GO:0043330 response to exogenous dsRNA(GO:0043330)
0.0 0.3 GO:0055090 acylglycerol homeostasis(GO:0055090) triglyceride homeostasis(GO:0070328)
0.0 0.1 GO:1902416 positive regulation of mRNA binding(GO:1902416) positive regulation of RNA binding(GO:1905216)
0.0 0.6 GO:0048488 synaptic vesicle endocytosis(GO:0048488)
0.0 0.5 GO:0006506 GPI anchor biosynthetic process(GO:0006506)
0.0 0.2 GO:0035020 regulation of Rac protein signal transduction(GO:0035020)
0.0 0.3 GO:0071391 cellular response to estrogen stimulus(GO:0071391)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.9 GO:0035985 senescence-associated heterochromatin focus(GO:0035985)
0.2 0.6 GO:0017109 glutamate-cysteine ligase complex(GO:0017109)
0.1 0.8 GO:0045261 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275) proton-transporting ATP synthase complex, catalytic core F(1)(GO:0045261)
0.1 0.7 GO:0097136 Bcl-2 family protein complex(GO:0097136)
0.1 0.6 GO:0000220 vacuolar proton-transporting V-type ATPase, V0 domain(GO:0000220)
0.1 0.5 GO:0031501 mannosyltransferase complex(GO:0031501)
0.0 0.2 GO:1990130 Iml1 complex(GO:1990130)
0.0 0.5 GO:0042788 polysomal ribosome(GO:0042788)
0.0 0.3 GO:0031414 N-terminal protein acetyltransferase complex(GO:0031414)
0.0 1.2 GO:0044295 axonal growth cone(GO:0044295)
0.0 0.5 GO:0005779 integral component of peroxisomal membrane(GO:0005779)
0.0 0.3 GO:0035327 transcriptionally active chromatin(GO:0035327)
0.0 0.4 GO:0035869 ciliary transition zone(GO:0035869)
0.0 0.1 GO:0097431 mitotic spindle pole(GO:0097431)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.2 GO:0033691 sialic acid binding(GO:0033691)
0.2 1.9 GO:0051575 5'-deoxyribose-5-phosphate lyase activity(GO:0051575)
0.2 0.6 GO:0004127 cytidylate kinase activity(GO:0004127) uridylate kinase activity(GO:0009041)
0.2 0.6 GO:0004357 glutamate-cysteine ligase activity(GO:0004357)
0.1 0.4 GO:0030292 protein tyrosine kinase inhibitor activity(GO:0030292)
0.1 0.4 GO:0003883 CTP synthase activity(GO:0003883)
0.1 0.3 GO:0048045 4-hydroxybenzoate octaprenyltransferase activity(GO:0008412) protoheme IX farnesyltransferase activity(GO:0008495) (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase activity(GO:0043888) cadaverine aminopropyltransferase activity(GO:0043918) agmatine aminopropyltransferase activity(GO:0043919) 1,4-dihydroxy-2-naphthoate octaprenyltransferase activity(GO:0046428) trans-pentaprenyltranstransferase activity(GO:0048045) ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.1 0.6 GO:0097322 7SK snRNA binding(GO:0097322)
0.1 0.7 GO:0051434 BH3 domain binding(GO:0051434)
0.1 2.6 GO:0030215 semaphorin receptor binding(GO:0030215)
0.1 0.8 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.1 0.2 GO:0098809 nitrite reductase activity(GO:0098809)
0.1 0.5 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.1 2.3 GO:0015175 neutral amino acid transmembrane transporter activity(GO:0015175)
0.0 0.8 GO:0015129 lactate transmembrane transporter activity(GO:0015129)
0.0 0.8 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.0 0.4 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 0.5 GO:0008545 JUN kinase kinase activity(GO:0008545)
0.0 0.3 GO:0004596 peptide alpha-N-acetyltransferase activity(GO:0004596)
0.0 0.4 GO:0005313 L-glutamate transmembrane transporter activity(GO:0005313)
0.0 3.1 GO:0001078 transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078)
0.0 0.6 GO:0035255 ionotropic glutamate receptor binding(GO:0035255)
0.0 2.6 GO:0030165 PDZ domain binding(GO:0030165)
0.0 0.9 GO:0046875 ephrin receptor binding(GO:0046875)
0.0 0.3 GO:0008242 omega peptidase activity(GO:0008242)
0.0 0.1 GO:1990715 mRNA CDS binding(GO:1990715)
0.0 0.2 GO:0036442 hydrogen-exporting ATPase activity(GO:0036442) ATPase activity, coupled to transmembrane movement of ions, rotational mechanism(GO:0044769) proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.0 0.2 GO:0004653 polypeptide N-acetylgalactosaminyltransferase activity(GO:0004653)
0.0 0.5 GO:0035496 UDP-glucose:glycoprotein glucosyltransferase activity(GO:0003980) O antigen polymerase activity(GO:0008755) lipopolysaccharide-1,6-galactosyltransferase activity(GO:0008921) cellulose synthase activity(GO:0016759) 9-phenanthrol UDP-glucuronosyltransferase activity(GO:0018715) 1-phenanthrol glycosyltransferase activity(GO:0018716) 9-phenanthrol glycosyltransferase activity(GO:0018717) 1,2-dihydroxy-phenanthrene glycosyltransferase activity(GO:0018718) phenanthrol glycosyltransferase activity(GO:0019112) alpha-1,2-galactosyltransferase activity(GO:0031278) dolichyl pyrophosphate Man7GlcNAc2 alpha-1,3-glucosyltransferase activity(GO:0033556) endogalactosaminidase activity(GO:0033931) lipopolysaccharide-1,5-galactosyltransferase activity(GO:0035496) dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase activity(GO:0042283) inositol phosphoceramide synthase activity(GO:0045140) alpha-(1->3)-fucosyltransferase activity(GO:0046920) indole-3-butyrate beta-glucosyltransferase activity(GO:0052638) salicylic acid glucosyltransferase (ester-forming) activity(GO:0052639) salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640) benzoic acid glucosyltransferase activity(GO:0052641) chondroitin hydrolase activity(GO:0052757) dolichyl-pyrophosphate Man7GlcNAc2 alpha-1,6-mannosyltransferase activity(GO:0052824) cytokinin 9-beta-glucosyltransferase activity(GO:0080062)