Motif ID: Hoxd12
Z-value: 1.379
Transcription factors associated with Hoxd12:
| Gene Symbol | Entrez ID | Gene Name |
|---|---|---|
| Hoxd12 | ENSMUSG00000001823.4 | Hoxd12 |
Top targets:
Showing 1 to 20 of 121 entries
Gene overrepresentation in biological_process category:
Showing 1 to 20 of 59 entries
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 8.3 | 33.2 | GO:0043490 | malate-aspartate shuttle(GO:0043490) |
| 3.0 | 33.2 | GO:0042572 | retinol metabolic process(GO:0042572) |
| 1.4 | 23.2 | GO:0021902 | commitment of neuronal cell to specific neuron type in forebrain(GO:0021902) |
| 1.6 | 12.8 | GO:0090336 | positive regulation of brown fat cell differentiation(GO:0090336) |
| 0.2 | 8.9 | GO:0032728 | positive regulation of interferon-beta production(GO:0032728) |
| 0.7 | 6.4 | GO:0010908 | regulation of heparan sulfate proteoglycan biosynthetic process(GO:0010908) positive regulation of heparan sulfate proteoglycan biosynthetic process(GO:0010909) canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition(GO:0044334) |
| 0.0 | 6.2 | GO:0043524 | negative regulation of neuron apoptotic process(GO:0043524) |
| 1.2 | 6.0 | GO:1904936 | cerebral cortex GABAergic interneuron migration(GO:0021853) interneuron migration(GO:1904936) |
| 0.2 | 5.9 | GO:0046677 | response to antibiotic(GO:0046677) |
| 1.5 | 5.8 | GO:0021764 | amygdala development(GO:0021764) |
| 1.9 | 5.7 | GO:1903225 | negative regulation of endodermal cell differentiation(GO:1903225) |
| 0.9 | 5.4 | GO:0006570 | tyrosine metabolic process(GO:0006570) |
| 1.3 | 5.2 | GO:0048686 | regulation of sprouting of injured axon(GO:0048686) regulation of axon extension involved in regeneration(GO:0048690) |
| 0.0 | 4.8 | GO:0015718 | monocarboxylic acid transport(GO:0015718) |
| 0.2 | 4.6 | GO:0002089 | lens morphogenesis in camera-type eye(GO:0002089) |
| 0.0 | 4.3 | GO:0030326 | embryonic limb morphogenesis(GO:0030326) embryonic appendage morphogenesis(GO:0035113) |
| 1.0 | 4.1 | GO:2000795 | negative regulation of epithelial cell proliferation involved in lung morphogenesis(GO:2000795) |
| 0.6 | 4.0 | GO:0071699 | olfactory placode formation(GO:0030910) olfactory placode development(GO:0071698) olfactory placode morphogenesis(GO:0071699) |
| 0.2 | 4.0 | GO:0035493 | SNARE complex assembly(GO:0035493) |
| 0.2 | 3.8 | GO:0097150 | neuronal stem cell population maintenance(GO:0097150) |
Gene overrepresentation in cellular_component category:
Showing 1 to 20 of 29 entries
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 33.2 | GO:0043197 | dendritic spine(GO:0043197) |
| 0.2 | 20.4 | GO:0000118 | histone deacetylase complex(GO:0000118) |
| 0.3 | 12.8 | GO:0016235 | aggresome(GO:0016235) |
| 0.7 | 6.4 | GO:0070369 | beta-catenin-TCF7L2 complex(GO:0070369) |
| 1.9 | 5.7 | GO:0005588 | collagen type V trimer(GO:0005588) |
| 0.2 | 5.4 | GO:0042470 | melanosome(GO:0042470) pigment granule(GO:0048770) |
| 1.7 | 5.2 | GO:0072534 | perineuronal net(GO:0072534) |
| 0.0 | 4.3 | GO:0045211 | postsynaptic membrane(GO:0045211) |
| 0.2 | 4.1 | GO:0044300 | cerebellar mossy fiber(GO:0044300) |
| 0.0 | 4.1 | GO:0005667 | transcription factor complex(GO:0005667) |
| 0.8 | 4.0 | GO:0070820 | tertiary granule(GO:0070820) |
| 0.0 | 3.8 | GO:0016363 | nuclear matrix(GO:0016363) |
| 0.0 | 3.8 | GO:0090575 | RNA polymerase II transcription factor complex(GO:0090575) |
| 0.1 | 2.5 | GO:0005942 | phosphatidylinositol 3-kinase complex(GO:0005942) |
| 0.0 | 2.5 | GO:0008023 | transcription elongation factor complex(GO:0008023) |
| 0.0 | 1.7 | GO:0016459 | myosin complex(GO:0016459) |
| 0.0 | 1.4 | GO:0005901 | caveola(GO:0005901) |
| 0.2 | 1.2 | GO:0097550 | transcriptional preinitiation complex(GO:0097550) |
| 0.0 | 1.2 | GO:0000315 | organellar large ribosomal subunit(GO:0000315) mitochondrial large ribosomal subunit(GO:0005762) |
| 0.0 | 0.9 | GO:0043596 | nuclear replication fork(GO:0043596) |
Gene overrepresentation in molecular_function category:
Showing 1 to 20 of 42 entries
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 5.5 | 33.2 | GO:0015501 | glutamate:sodium symporter activity(GO:0015501) |
| 4.7 | 33.2 | GO:0052650 | NADP-retinol dehydrogenase activity(GO:0052650) |
| 0.2 | 21.3 | GO:0046332 | SMAD binding(GO:0046332) |
| 0.0 | 18.5 | GO:0003682 | chromatin binding(GO:0003682) |
| 0.0 | 8.6 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.2 | 6.7 | GO:0071837 | HMG box domain binding(GO:0071837) |
| 0.0 | 6.6 | GO:0001078 | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding(GO:0001078) |
| 0.1 | 6.4 | GO:0005547 | phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547) |
| 0.1 | 5.8 | GO:0003707 | steroid hormone receptor activity(GO:0003707) |
| 0.4 | 5.4 | GO:0016863 | intramolecular oxidoreductase activity, transposing C=C bonds(GO:0016863) |
| 0.3 | 5.2 | GO:0046625 | sphingolipid binding(GO:0046625) |
| 0.2 | 5.2 | GO:0045295 | gamma-catenin binding(GO:0045295) |
| 0.1 | 4.8 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
| 0.1 | 4.6 | GO:0005070 | SH3/SH2 adaptor activity(GO:0005070) |
| 0.2 | 4.0 | GO:0000983 | transcription factor activity, RNA polymerase II core promoter sequence-specific(GO:0000983) |
| 0.1 | 4.0 | GO:0005484 | SNAP receptor activity(GO:0005484) |
| 0.1 | 3.5 | GO:0030507 | spectrin binding(GO:0030507) |
| 0.0 | 3.5 | GO:0005089 | Rho guanyl-nucleotide exchange factor activity(GO:0005089) |
| 0.5 | 3.0 | GO:0008321 | Ral guanyl-nucleotide exchange factor activity(GO:0008321) |
| 0.6 | 2.8 | GO:0038132 | neuregulin binding(GO:0038132) |
Gene overrepresentation in C2:CP category:
Showing 1 to 18 of 18 entries
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 30.5 | PID_TAP63_PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.2 | 9.3 | PID_HNF3A_PATHWAY | FOXA1 transcription factor network |
| 0.1 | 6.4 | PID_ARF6_PATHWAY | Arf6 signaling events |
| 0.1 | 6.3 | PID_AP1_PATHWAY | AP-1 transcription factor network |
| 0.1 | 5.7 | NABA_COLLAGENS | Genes encoding collagen proteins |
| 0.0 | 5.2 | NABA_ECM_GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 4.6 | PID_CDC42_REG_PATHWAY | Regulation of CDC42 activity |
| 0.1 | 3.5 | PID_RAC1_REG_PATHWAY | Regulation of RAC1 activity |
| 0.1 | 3.0 | PID_NETRIN_PATHWAY | Netrin-mediated signaling events |
| 0.0 | 2.9 | PID_CDC42_PATHWAY | CDC42 signaling events |
| 0.2 | 2.5 | PID_VEGF_VEGFR_PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 2.5 | PID_IL5_PATHWAY | IL5-mediated signaling events |
| 0.2 | 2.1 | PID_ERBB_NETWORK_PATHWAY | ErbB receptor signaling network |
| 0.0 | 2.0 | PID_CASPASE_PATHWAY | Caspase cascade in apoptosis |
| 0.0 | 1.7 | ST_FAS_SIGNALING_PATHWAY | Fas Signaling Pathway |
| 0.0 | 1.3 | PID_ERA_GENOMIC_PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.7 | PID_INTEGRIN4_PATHWAY | Alpha6 beta4 integrin-ligand interactions |
| 0.0 | 0.2 | PID_TCR_JNK_PATHWAY | JNK signaling in the CD4+ TCR pathway |
Gene overrepresentation in C2:CP:REACTOME category:
Showing 1 to 17 of 17 entries
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 33.2 | REACTOME_AMINO_ACID_AND_OLIGOPEPTIDE_SLC_TRANSPORTERS | Genes involved in Amino acid and oligopeptide SLC transporters |
| 0.1 | 9.5 | REACTOME_SIGNALING_BY_RHO_GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.2 | 8.1 | REACTOME_RNA_POL_III_TRANSCRIPTION | Genes involved in RNA Polymerase III Transcription |
| 0.1 | 7.0 | REACTOME_NUCLEAR_RECEPTOR_TRANSCRIPTION_PATHWAY | Genes involved in Nuclear Receptor transcription pathway |
| 0.1 | 5.7 | REACTOME_NCAM1_INTERACTIONS | Genes involved in NCAM1 interactions |
| 0.2 | 4.1 | REACTOME_SYNTHESIS_SECRETION_AND_INACTIVATION_OF_GLP1 | Genes involved in Synthesis, Secretion, and Inactivation of Glucagon-like Peptide-1 (GLP-1) |
| 0.3 | 4.0 | REACTOME_PROTEOLYTIC_CLEAVAGE_OF_SNARE_COMPLEX_PROTEINS | Genes involved in Proteolytic cleavage of SNARE complex proteins |
| 0.2 | 2.5 | REACTOME_IL_7_SIGNALING | Genes involved in Interleukin-7 signaling |
| 0.2 | 2.5 | REACTOME_VEGF_LIGAND_RECEPTOR_INTERACTIONS | Genes involved in VEGF ligand-receptor interactions |
| 0.1 | 2.2 | REACTOME_ENOS_ACTIVATION_AND_REGULATION | Genes involved in eNOS activation and regulation |
| 0.1 | 2.1 | REACTOME_SHC1_EVENTS_IN_ERBB4_SIGNALING | Genes involved in SHC1 events in ERBB4 signaling |
| 0.0 | 2.0 | REACTOME_APOPTOTIC_CLEAVAGE_OF_CELLULAR_PROTEINS | Genes involved in Apoptotic cleavage of cellular proteins |
| 0.0 | 2.0 | REACTOME_NETRIN1_SIGNALING | Genes involved in Netrin-1 signaling |
| 0.1 | 1.7 | REACTOME_PYRIMIDINE_METABOLISM | Genes involved in Pyrimidine metabolism |
| 0.0 | 1.1 | REACTOME_NEPHRIN_INTERACTIONS | Genes involved in Nephrin interactions |
| 0.0 | 0.3 | REACTOME_DEGRADATION_OF_THE_EXTRACELLULAR_MATRIX | Genes involved in Degradation of the extracellular matrix |
| 0.0 | 0.2 | REACTOME_IRAK2_MEDIATED_ACTIVATION_OF_TAK1_COMPLEX_UPON_TLR7_8_OR_9_STIMULATION | Genes involved in IRAK2 mediated activation of TAK1 complex upon TLR7/8 or 9 stimulation |
