avrg: NHBE cells infected with SARS-CoV-2 Analysis Results (GEO series: GSE147507)
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Sample | Condition |
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SARS004-CoV2-1_S4 | 01_SARS-CoV-2_infected_NHBE |
SARS004-CoV2-2_S5 | 01_SARS-CoV-2_infected_NHBE |
SARS004-CoV2-3_S6 | 01_SARS-CoV-2_infected_NHBE |
SARS004-mock-1_S1 | 02_mock_NHBE |
SARS004-mock-2_S2 | 02_mock_NHBE |
SARS004-mock-3_S3 | 02_mock_NHBE |
Motif name | Z-value | Associated genes | Profile | Logo |
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IRF2_STAT2_IRF8_IRF1 | 6.42 |
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RELA | 6.19 |
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IRF9 | 4.87 |
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IRF6_IRF4_IRF5 | 3.69 |
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YBX1_FOS_NFYC_NFYA_NFYB_CEBPZ | 3.65 |
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REL | 3.54 |
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CEBPA | 3.45 |
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NFKB1 | 3.33 |
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CEBPG | 3.33 |
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KLF14_SP8 | 3.08 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.
Sample name | Condition | Replicate/Batch |
---|---|---|
01_SARS-CoV-2_infected_NHBE | ||
02_mock_NHBE |