Motif ID: Hoxd9

Z-value: 0.654


Transcription factors associated with Hoxd9:

Gene SymbolEntrez IDGene Name
Hoxd9 ENSMUSG00000043342.8 Hoxd9



Activity profile for motif Hoxd9.

activity profile for motif Hoxd9


Sorted Z-values histogram for motif Hoxd9

Sorted Z-values for motif Hoxd9



Network of associatons between targets according to the STRING database.



First level regulatory network of Hoxd9

PNG image of the network

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Top targets:


Showing 1 to 20 of 102 entries
PromoterScoreRefseqGene SymbolGene Name
chr6_-_23248264 2.874 ENSMUST00000031709.5
 Fezf1
Fez family zinc finger 1
chr19_+_23723279 2.451 ENSMUST00000067077.1
 Gm9938
predicted gene 9938
chr12_+_38783503 2.337 ENSMUST00000159334.1
 Etv1
ets variant gene 1
chr9_-_64172879 2.146 ENSMUST00000176299.1
ENSMUST00000130127.1
ENSMUST00000176794.1
ENSMUST00000177045.1
 Zwilch



zwilch kinetochore protein



chr1_-_163289214 2.083 ENSMUST00000183691.1
 Prrx1
paired related homeobox 1
chr15_-_65014904 2.077 ENSMUST00000110100.2
 Gm21961
predicted gene, 21961
chr1_-_128102412 1.710 ENSMUST00000112538.1
ENSMUST00000086614.5
 Zranb3

zinc finger, RAN-binding domain containing 3

chrX_+_82948861 1.413 ENSMUST00000114000.1
 Dmd
dystrophin, muscular dystrophy
chr11_-_109472611 1.409 ENSMUST00000168740.1
 Slc16a6
solute carrier family 16 (monocarboxylic acid transporters), member 6
chrX_+_85048309 1.373 ENSMUST00000113991.1
ENSMUST00000113992.2
 Dmd

dystrophin, muscular dystrophy

chr1_-_97761538 1.291 ENSMUST00000171129.1
 Ppip5k2
diphosphoinositol pentakisphosphate kinase 2
chr7_+_66365905 1.285 ENSMUST00000107486.1
 Gm10974
predicted gene 10974
chr17_-_32166879 1.221 ENSMUST00000087723.3
 Notch3
notch 3
chr7_+_67647405 1.092 ENSMUST00000032774.8
ENSMUST00000107471.1
 Ttc23

tetratricopeptide repeat domain 23

chr11_-_89538556 1.031 ENSMUST00000169201.1
 Ankfn1
ankyrin-repeat and fibronectin type III domain containing 1
chr4_+_136143497 1.014 ENSMUST00000008016.2
 Id3
inhibitor of DNA binding 3
chr3_+_35754121 0.998 ENSMUST00000108186.1
ENSMUST00000029257.8
 Atp11b

ATPase, class VI, type 11B

chr14_-_100149764 0.981 ENSMUST00000097079.4
 Klf12
Kruppel-like factor 12
chr11_+_29373618 0.921 ENSMUST00000040182.6
ENSMUST00000109477.1
 Ccdc88a

coiled coil domain containing 88A

chrX_-_134541847 0.914 ENSMUST00000054213.4
 Timm8a1
translocase of inner mitochondrial membrane 8A1

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Showing 1 to 20 of 40 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.5 2.9 GO:0021797 forebrain anterior/posterior pattern specification(GO:0021797)
0.9 2.8 GO:0008065 establishment of blood-nerve barrier(GO:0008065) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
0.1 2.6 GO:0007638 mechanosensory behavior(GO:0007638)
0.2 2.1 GO:0048664 neuron fate determination(GO:0048664)
0.0 2.1 GO:0007093 mitotic cell cycle checkpoint(GO:0007093)
0.6 1.7 GO:0036292 DNA rewinding(GO:0036292)
0.0 1.6 GO:0042462 eye photoreceptor cell development(GO:0042462)
0.2 1.4 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.1 1.4 GO:0035873 lactate transport(GO:0015727) lactate transmembrane transport(GO:0035873) plasma membrane lactate transport(GO:0035879)
0.0 1.2 GO:0048844 artery morphogenesis(GO:0048844)
0.1 1.0 GO:0050957 equilibrioception(GO:0050957)
0.0 1.0 GO:0071398 cellular response to fatty acid(GO:0071398)
0.0 0.9 GO:0032148 activation of protein kinase B activity(GO:0032148)
0.3 0.8 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)
0.1 0.8 GO:1901409 regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901407) positive regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901409)
0.1 0.7 GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity(GO:0030951)
0.1 0.7 GO:0035989 tendon development(GO:0035989)
0.1 0.7 GO:0016127 cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127)
0.1 0.5 GO:0034285 response to sucrose(GO:0009744) response to disaccharide(GO:0034285)
0.0 0.5 GO:0000301 retrograde transport, vesicle recycling within Golgi(GO:0000301)

Gene overrepresentation in cellular_component category:

Showing 1 to 20 of 20 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.1 2.5 GO:0016010 dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665)
0.7 2.1 GO:1990423 RZZ complex(GO:1990423)
0.0 1.5 GO:0043596 nuclear replication fork(GO:0043596)
0.0 0.9 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.9 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.0 0.9 GO:0005902 microvillus(GO:0005902)
0.0 0.8 GO:0016327 apicolateral plasma membrane(GO:0016327)
0.0 0.8 GO:0008023 transcription elongation factor complex(GO:0008023)
0.1 0.7 GO:0033269 internode region of axon(GO:0033269)
0.1 0.7 GO:0098643 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.0 0.7 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.7 GO:0032391 photoreceptor connecting cilium(GO:0032391)
0.0 0.5 GO:0017119 Golgi transport complex(GO:0017119)
0.1 0.4 GO:0000120 RNA polymerase I transcription factor complex(GO:0000120)
0.0 0.4 GO:0002102 podosome(GO:0002102)
0.0 0.3 GO:0032580 Golgi cisterna membrane(GO:0032580)
0.0 0.2 GO:0008024 cyclin/CDK positive transcription elongation factor complex(GO:0008024)
0.0 0.1 GO:0005943 phosphatidylinositol 3-kinase complex, class IA(GO:0005943)
0.0 0.1 GO:0071438 NADPH oxidase complex(GO:0043020) invadopodium membrane(GO:0071438)
0.0 0.1 GO:0044292 dendrite terminus(GO:0044292)

Gene overrepresentation in molecular_function category:

Showing 1 to 20 of 31 entries
Log-likelihood per target Total log-likelihoodTermDescription
0.0 3.9 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.2 2.8 GO:0017166 dystroglycan binding(GO:0002162) vinculin binding(GO:0017166)
0.1 2.1 GO:0071837 HMG box domain binding(GO:0071837)
0.1 1.7 GO:0036310 annealing helicase activity(GO:0036310)
0.2 1.4 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.1 1.4 GO:0015129 lactate transmembrane transporter activity(GO:0015129)
0.3 1.3 GO:0000832 inositol hexakisphosphate kinase activity(GO:0000828) inositol hexakisphosphate 5-kinase activity(GO:0000832) inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.0 1.0 GO:0004012 phospholipid-translocating ATPase activity(GO:0004012)
0.0 1.0 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.9 GO:0043422 protein kinase B binding(GO:0043422)
0.0 0.9 GO:0070016 armadillo repeat domain binding(GO:0070016)
0.0 0.8 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.8 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.1 0.7 GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854)
0.1 0.7 GO:0008321 Ral guanyl-nucleotide exchange factor activity(GO:0008321)
0.0 0.7 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.1 0.5 GO:0097642 calcitonin family receptor activity(GO:0097642)
0.0 0.5 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.5 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
0.1 0.4 GO:0008131 primary amine oxidase activity(GO:0008131)