Motif ID: Hoxd9

Z-value: 0.654


Transcription factors associated with Hoxd9:

Gene SymbolEntrez IDGene Name
Hoxd9 ENSMUSG00000043342.8 Hoxd9



Activity profile for motif Hoxd9.

activity profile for motif Hoxd9


Sorted Z-values histogram for motif Hoxd9

Sorted Z-values for motif Hoxd9



Network of associatons between targets according to the STRING database.



First level regulatory network of Hoxd9

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr6_-_23248264 2.874 ENSMUST00000031709.5
 Fezf1
Fez family zinc finger 1
chr19_+_23723279 2.451 ENSMUST00000067077.1
 Gm9938
predicted gene 9938
chr12_+_38783503 2.337 ENSMUST00000159334.1
 Etv1
ets variant gene 1
chr9_-_64172879 2.146 ENSMUST00000176299.1
ENSMUST00000130127.1
ENSMUST00000176794.1
ENSMUST00000177045.1
 Zwilch



zwilch kinetochore protein



chr1_-_163289214 2.083 ENSMUST00000183691.1
 Prrx1
paired related homeobox 1
chr15_-_65014904 2.077 ENSMUST00000110100.2
 Gm21961
predicted gene, 21961
chr1_-_128102412 1.710 ENSMUST00000112538.1
ENSMUST00000086614.5
 Zranb3

zinc finger, RAN-binding domain containing 3

chrX_+_82948861 1.413 ENSMUST00000114000.1
 Dmd
dystrophin, muscular dystrophy
chr11_-_109472611 1.409 ENSMUST00000168740.1
 Slc16a6
solute carrier family 16 (monocarboxylic acid transporters), member 6
chrX_+_85048309 1.373 ENSMUST00000113991.1
ENSMUST00000113992.2
 Dmd

dystrophin, muscular dystrophy

chr1_-_97761538 1.291 ENSMUST00000171129.1
 Ppip5k2
diphosphoinositol pentakisphosphate kinase 2
chr7_+_66365905 1.285 ENSMUST00000107486.1
 Gm10974
predicted gene 10974
chr17_-_32166879 1.221 ENSMUST00000087723.3
 Notch3
notch 3
chr7_+_67647405 1.092 ENSMUST00000032774.8
ENSMUST00000107471.1
 Ttc23

tetratricopeptide repeat domain 23

chr11_-_89538556 1.031 ENSMUST00000169201.1
 Ankfn1
ankyrin-repeat and fibronectin type III domain containing 1
chr4_+_136143497 1.014 ENSMUST00000008016.2
 Id3
inhibitor of DNA binding 3
chr3_+_35754121 0.998 ENSMUST00000108186.1
ENSMUST00000029257.8
 Atp11b

ATPase, class VI, type 11B

chr14_-_100149764 0.981 ENSMUST00000097079.4
 Klf12
Kruppel-like factor 12
chr11_+_29373618 0.921 ENSMUST00000040182.6
ENSMUST00000109477.1
 Ccdc88a

coiled coil domain containing 88A

chrX_-_134541847 0.914 ENSMUST00000054213.4
 Timm8a1
translocase of inner mitochondrial membrane 8A1
chr17_-_78684262 0.870 ENSMUST00000145480.1
 Strn
striatin, calmodulin binding protein
chr19_+_56548254 0.835 ENSMUST00000071423.5
 Nhlrc2
NHL repeat containing 2
chr10_+_75037066 0.810 ENSMUST00000147802.1
ENSMUST00000020391.5
 Rab36

RAB36, member RAS oncogene family

chr15_+_39006272 0.809 ENSMUST00000179165.1
ENSMUST00000022906.7
 Fzd6

frizzled homolog 6 (Drosophila)

chr17_+_78491549 0.804 ENSMUST00000079363.4
 Gm10093
predicted pseudogene 10093
chr3_-_65958236 0.752 ENSMUST00000029416.7
 Ccnl1
cyclin L1
chrX_-_10216918 0.739 ENSMUST00000072393.2
ENSMUST00000044598.6
ENSMUST00000073392.4
ENSMUST00000115533.1
ENSMUST00000115532.1
 Rpgr




retinitis pigmentosa GTPase regulator




chr2_+_91526756 0.702 ENSMUST00000111338.3
 Ckap5
cytoskeleton associated protein 5
chr19_-_56548122 0.699 ENSMUST00000026063.5
ENSMUST00000182276.1
 Dclre1a

DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)

chr3_+_114030532 0.692 ENSMUST00000123619.1
ENSMUST00000092155.5
 Col11a1

collagen, type XI, alpha 1

chr7_+_127800604 0.691 ENSMUST00000046863.5
ENSMUST00000106272.1
ENSMUST00000139068.1
 Hsd3b7


hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 7


chr9_-_21989427 0.684 ENSMUST00000045726.6
 Rgl3
ral guanine nucleotide dissociation stimulator-like 3
chr19_-_56548013 0.660 ENSMUST00000182059.1
 Dclre1a
DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)
chr2_-_58052832 0.654 ENSMUST00000090940.5
 Ermn
ermin, ERM-like protein
chr16_-_50330987 0.612 ENSMUST00000114488.1
 Bbx
bobby sox homolog (Drosophila)
chr1_-_139377094 0.609 ENSMUST00000131586.1
ENSMUST00000145244.1
 Crb1

crumbs homolog 1 (Drosophila)

chr16_+_10835046 0.598 ENSMUST00000037913.8
 Rmi2
RMI2, RecQ mediated genome instability 2, homolog (S. cerevisiae)
chrX_-_111697069 0.594 ENSMUST00000113422.2
ENSMUST00000038472.5
 Hdx

highly divergent homeobox

chr2_-_175131864 0.553 ENSMUST00000108929.2
 Gm14399
predicted gene 14399
chr2_-_63184253 0.518 ENSMUST00000075052.3
ENSMUST00000112454.1
 Kcnh7

potassium voltage-gated channel, subfamily H (eag-related), member 7

chr14_-_75754475 0.517 ENSMUST00000049168.7
 Cog3
component of oligomeric golgi complex 3
chr2_-_84425258 0.505 ENSMUST00000074262.2
 Calcrl
calcitonin receptor-like
chr3_-_66296807 0.478 ENSMUST00000029419.7
 Veph1
ventricular zone expressed PH domain-containing 1
chr15_+_79030874 0.468 ENSMUST00000171999.1
ENSMUST00000006544.7
 Gcat

glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase)

chr16_-_65562686 0.449 ENSMUST00000004965.6
 Chmp2b
charged multivesicular body protein 2B
chr16_-_45693658 0.446 ENSMUST00000114562.2
ENSMUST00000036617.7
 Tmprss7

transmembrane serine protease 7

chr1_+_183388981 0.445 ENSMUST00000097043.5
 Taf1a
TATA box binding protein (Tbp)-associated factor, RNA polymerase I, A
chr3_-_116129615 0.437 ENSMUST00000029574.8
 Vcam1
vascular cell adhesion molecule 1
chr6_+_11925869 0.431 ENSMUST00000115510.1
ENSMUST00000115511.2
ENSMUST00000090632.4
 Phf14


PHD finger protein 14


chr16_+_44943737 0.425 ENSMUST00000114622.3
ENSMUST00000166731.1
 Cd200r3

CD200 receptor 3

chr3_-_49757257 0.414 ENSMUST00000035931.7
 Pcdh18
protocadherin 18
chr17_-_45474839 0.406 ENSMUST00000024731.8
 Spats1
spermatogenesis associated, serine-rich 1
chr12_+_59129720 0.386 ENSMUST00000175912.1
ENSMUST00000176892.1
 Ctage5

CTAGE family, member 5

chr12_+_102128718 0.376 ENSMUST00000159329.1
 Slc24a4
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr19_-_29753600 0.372 ENSMUST00000175764.1
 9930021J03Rik
RIKEN cDNA 9930021J03 gene
chr13_+_58281183 0.362 ENSMUST00000180882.1
ENSMUST00000180452.1
 Gm26555

predicted gene, 26555

chr1_+_180330470 0.354 ENSMUST00000070181.6
 Itpkb
inositol 1,4,5-trisphosphate 3-kinase B
chr18_-_78206408 0.341 ENSMUST00000163367.1
 Slc14a2
solute carrier family 14 (urea transporter), member 2
chr18_+_32067729 0.335 ENSMUST00000025243.3
 Iws1
IWS1 homolog (S. cerevisiae)
chr12_+_59129757 0.332 ENSMUST00000069430.8
ENSMUST00000177370.1
 Ctage5

CTAGE family, member 5

chr2_+_11172080 0.311 ENSMUST00000114853.1
 Prkcq
protein kinase C, theta
chr11_+_110968016 0.303 ENSMUST00000106636.1
ENSMUST00000180023.1
 Kcnj16

potassium inwardly-rectifying channel, subfamily J, member 16

chr1_-_139377041 0.298 ENSMUST00000059825.5
 Crb1
crumbs homolog 1 (Drosophila)
chr5_-_62766153 0.296 ENSMUST00000076623.4
 Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr12_+_77238093 0.276 ENSMUST00000177595.1
ENSMUST00000171770.2
 Fut8

fucosyltransferase 8

chr3_+_53845086 0.261 ENSMUST00000108014.1
 Gm10985
predicted gene 10985
chr10_-_93891141 0.260 ENSMUST00000180840.1
 Metap2
methionine aminopeptidase 2
chr1_+_49244616 0.246 ENSMUST00000056879.8
 C230029F24Rik
RIKEN cDNA C230029F24 gene
chr2_-_116064721 0.240 ENSMUST00000110906.2
 Meis2
Meis homeobox 2
chr2_-_37647199 0.231 ENSMUST00000028279.3
 Strbp
spermatid perinuclear RNA binding protein
chr9_+_78051938 0.229 ENSMUST00000024104.7
 Gcm1
glial cells missing homolog 1 (Drosophila)
chr7_-_34313531 0.225 ENSMUST00000108074.1
 4931406P16Rik
RIKEN cDNA 4931406P16 gene
chr5_-_62765618 0.218 ENSMUST00000159470.1
 Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr7_+_30565410 0.201 ENSMUST00000043850.7
 Igflr1
IGF-like family receptor 1
chr18_-_37644185 0.200 ENSMUST00000066272.4
 Taf7
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
chrM_+_11734 0.174 ENSMUST00000082418.1
 mt-Nd5
mitochondrially encoded NADH dehydrogenase 5
chr2_-_140671462 0.171 ENSMUST00000110057.2
 Flrt3
fibronectin leucine rich transmembrane protein 3
chr18_+_61953048 0.163 ENSMUST00000051720.5
 Sh3tc2
SH3 domain and tetratricopeptide repeats 2
chr10_-_127030789 0.162 ENSMUST00000120547.1
ENSMUST00000152054.1
 Tsfm

Ts translation elongation factor, mitochondrial

chr10_-_127030813 0.159 ENSMUST00000040560.4
 Tsfm
Ts translation elongation factor, mitochondrial
chrX_-_49797700 0.150 ENSMUST00000033442.7
ENSMUST00000114891.1
 Igsf1

immunoglobulin superfamily, member 1

chr8_+_79028317 0.147 ENSMUST00000087927.4
ENSMUST00000098614.2
 Zfp827

zinc finger protein 827

chr2_-_63184170 0.131 ENSMUST00000112452.1
 Kcnh7
potassium voltage-gated channel, subfamily H (eag-related), member 7
chr1_-_175491130 0.116 ENSMUST00000027812.5
 Rgs7
regulator of G protein signaling 7
chr5_-_69590783 0.115 ENSMUST00000173927.1
 Gnpda2
glucosamine-6-phosphate deaminase 2
chr4_-_129578535 0.096 ENSMUST00000052835.8
 Fam167b
family with sequence similarity 167, member B
chr14_-_118923070 0.095 ENSMUST00000047208.5
 Dzip1
DAZ interacting protein 1
chr3_+_32436376 0.084 ENSMUST00000108242.1
 Pik3ca
phosphatidylinositol 3-kinase, catalytic, alpha polypeptide
chr2_+_30952955 0.074 ENSMUST00000028199.5
 Tor1b
torsin family 1, member B
chr7_-_16286744 0.068 ENSMUST00000150528.2
ENSMUST00000118976.2
ENSMUST00000146609.2
 Ccdc9


coiled-coil domain containing 9


chrX_-_134111852 0.067 ENSMUST00000033610.6
 Nox1
NADPH oxidase 1
chr9_-_39604124 0.063 ENSMUST00000042485.4
ENSMUST00000141370.1
 AW551984

expressed sequence AW551984

chr1_-_37536232 0.059 ENSMUST00000042161.8
 Mgat4a
mannoside acetylglucosaminyltransferase 4, isoenzyme A
chr13_-_105271039 0.056 ENSMUST00000069686.6
 Rnf180
ring finger protein 180
chr17_+_17402672 0.053 ENSMUST00000115576.2
 Lix1
limb expression 1 homolog (chicken)
chr18_+_80046854 0.036 ENSMUST00000070219.7
 Pard6g
par-6 partitioning defective 6 homolog gamma (C. elegans)
chr2_+_69790968 0.036 ENSMUST00000180290.1
 Phospho2
phosphatase, orphan 2
chr5_+_63812447 0.026 ENSMUST00000081747.3
 0610040J01Rik
RIKEN cDNA 0610040J01 gene
chr3_-_88772578 0.026 ENSMUST00000090945.4
 Syt11
synaptotagmin XI
chr17_+_47649621 0.023 ENSMUST00000145314.1
 Usp49
ubiquitin specific peptidase 49
chr1_-_172027269 0.023 ENSMUST00000027837.6
ENSMUST00000111264.1
 Vangl2

vang-like 2 (van gogh, Drosophila)

chr1_-_162898665 0.015 ENSMUST00000111510.1
ENSMUST00000045902.6
 Fmo2

flavin containing monooxygenase 2


Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.8 GO:0008065 establishment of blood-nerve barrier(GO:0008065) regulation of skeletal muscle contraction by regulation of release of sequestered calcium ion(GO:0014809)
0.6 1.7 GO:0036292 DNA rewinding(GO:0036292)
0.5 2.9 GO:0021797 forebrain anterior/posterior pattern specification(GO:0021797)
0.3 0.8 GO:0035880 embryonic nail plate morphogenesis(GO:0035880)
0.2 2.1 GO:0048664 neuron fate determination(GO:0048664)
0.2 1.4 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.1 0.4 GO:0035790 platelet-derived growth factor receptor-alpha signaling pathway(GO:0035790)
0.1 0.7 GO:0030951 establishment or maintenance of microtubule cytoskeleton polarity(GO:0030951)
0.1 0.5 GO:0034285 response to sucrose(GO:0009744) response to disaccharide(GO:0034285)
0.1 0.7 GO:0035989 tendon development(GO:0035989)
0.1 1.0 GO:0050957 equilibrioception(GO:0050957)
0.1 0.3 GO:2000569 T-helper 2 cell activation(GO:0035712) positive regulation of T-helper 17 type immune response(GO:2000318) regulation of T-helper 2 cell activation(GO:2000569) positive regulation of T-helper 2 cell activation(GO:2000570)
0.1 0.3 GO:0046368 GDP-L-fucose metabolic process(GO:0046368)
0.1 0.4 GO:0033030 negative regulation of neutrophil apoptotic process(GO:0033030)
0.1 2.6 GO:0007638 mechanosensory behavior(GO:0007638)
0.1 0.8 GO:1901409 regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901407) positive regulation of phosphorylation of RNA polymerase II C-terminal domain(GO:1901409)
0.1 1.4 GO:0035873 lactate transport(GO:0015727) lactate transmembrane transport(GO:0035873) plasma membrane lactate transport(GO:0035879)
0.1 0.7 GO:0016127 cholesterol catabolic process(GO:0006707) sterol catabolic process(GO:0016127)
0.1 0.3 GO:0070125 mitochondrial translational elongation(GO:0070125)
0.1 0.2 GO:0003345 proepicardium cell migration involved in pericardium morphogenesis(GO:0003345)
0.0 0.3 GO:0015840 urea transport(GO:0015840) urea transmembrane transport(GO:0071918)
0.0 0.3 GO:0000414 regulation of histone H3-K36 methylation(GO:0000414)
0.0 1.6 GO:0042462 eye photoreceptor cell development(GO:0042462)
0.0 0.4 GO:0061032 visceral serous pericardium development(GO:0061032)
0.0 0.9 GO:0032148 activation of protein kinase B activity(GO:0032148)
0.0 0.2 GO:0060018 astrocyte fate commitment(GO:0060018)
0.0 1.0 GO:0071398 cellular response to fatty acid(GO:0071398)
0.0 0.4 GO:1901673 regulation of mitotic spindle assembly(GO:1901673)
0.0 0.4 GO:0097186 amelogenesis(GO:0097186)
0.0 0.1 GO:0044028 DNA hypomethylation(GO:0044028) hypomethylation of CpG island(GO:0044029)
0.0 0.1 GO:0072592 oxygen metabolic process(GO:0072592)
0.0 0.3 GO:0018206 peptidyl-methionine modification(GO:0018206)
0.0 0.5 GO:0000301 retrograde transport, vesicle recycling within Golgi(GO:0000301)
0.0 0.4 GO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules(GO:0016339)
0.0 1.2 GO:0048844 artery morphogenesis(GO:0048844)
0.0 0.1 GO:0006046 N-acetylglucosamine catabolic process(GO:0006046)
0.0 2.1 GO:0007093 mitotic cell cycle checkpoint(GO:0007093)
0.0 0.0 GO:1904468 negative regulation of tumor necrosis factor secretion(GO:1904468)
0.0 0.1 GO:0060923 cardiac muscle cell fate commitment(GO:0060923)
0.0 0.2 GO:0032287 peripheral nervous system myelin maintenance(GO:0032287)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 GO:1990423 RZZ complex(GO:1990423)
0.1 2.5 GO:0016010 dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665)
0.1 0.4 GO:0000120 RNA polymerase I transcription factor complex(GO:0000120)
0.1 0.7 GO:0033269 internode region of axon(GO:0033269)
0.1 0.7 GO:0098643 fibrillar collagen trimer(GO:0005583) banded collagen fibril(GO:0098643)
0.0 0.9 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 0.8 GO:0016327 apicolateral plasma membrane(GO:0016327)
0.0 1.5 GO:0043596 nuclear replication fork(GO:0043596)
0.0 0.5 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.7 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.1 GO:0005943 phosphatidylinositol 3-kinase complex, class IA(GO:0005943)
0.0 0.2 GO:0008024 cyclin/CDK positive transcription elongation factor complex(GO:0008024)
0.0 0.7 GO:0032391 photoreceptor connecting cilium(GO:0032391)
0.0 0.8 GO:0008023 transcription elongation factor complex(GO:0008023)
0.0 0.3 GO:0032580 Golgi cisterna membrane(GO:0032580)
0.0 0.4 GO:0002102 podosome(GO:0002102)
0.0 0.1 GO:0071438 NADPH oxidase complex(GO:0043020) invadopodium membrane(GO:0071438)
0.0 0.9 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.0 0.1 GO:0044292 dendrite terminus(GO:0044292)
0.0 0.9 GO:0005902 microvillus(GO:0005902)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.3 GO:0000832 inositol hexakisphosphate kinase activity(GO:0000828) inositol hexakisphosphate 5-kinase activity(GO:0000832) inositol hexakisphosphate 1-kinase activity(GO:0052723) inositol hexakisphosphate 3-kinase activity(GO:0052724)
0.2 2.8 GO:0017166 dystroglycan binding(GO:0002162) vinculin binding(GO:0017166)
0.2 1.4 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.1 1.7 GO:0036310 annealing helicase activity(GO:0036310)
0.1 0.5 GO:0097642 calcitonin family receptor activity(GO:0097642)
0.1 0.7 GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity(GO:0003854)
0.1 0.7 GO:0008321 Ral guanyl-nucleotide exchange factor activity(GO:0008321)
0.1 0.4 GO:0008131 primary amine oxidase activity(GO:0008131)
0.1 1.4 GO:0015129 lactate transmembrane transporter activity(GO:0015129)
0.1 0.4 GO:0008273 calcium, potassium:sodium antiporter activity(GO:0008273)
0.1 0.4 GO:0008440 inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440)
0.1 2.1 GO:0071837 HMG box domain binding(GO:0071837)
0.1 0.3 GO:0015265 urea channel activity(GO:0015265)
0.0 1.0 GO:0004012 phospholipid-translocating ATPase activity(GO:0004012)
0.0 0.9 GO:0043422 protein kinase B binding(GO:0043422)
0.0 0.8 GO:0042813 Wnt-activated receptor activity(GO:0042813)
0.0 0.9 GO:0070016 armadillo repeat domain binding(GO:0070016)
0.0 1.0 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.1 GO:0004342 glucosamine-6-phosphate deaminase activity(GO:0004342)
0.0 0.5 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.1 GO:0030171 voltage-gated proton channel activity(GO:0030171)
0.0 0.7 GO:0005201 extracellular matrix structural constituent(GO:0005201)
0.0 3.9 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.0 0.1 GO:0034711 inhibin binding(GO:0034711)
0.0 0.8 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 0.2 GO:0042809 vitamin D receptor binding(GO:0042809)
0.0 0.0 GO:0033883 pyridoxal phosphatase activity(GO:0033883)
0.0 0.1 GO:0008454 alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0008454)
0.0 0.3 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.5 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
0.0 0.1 GO:0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity(GO:0046934) phosphatidylinositol bisphosphate kinase activity(GO:0052813)