avrg: GFI1 WT vs 36n/n vs KD
ISMARA - Integrated System for Motif Actitivity Response Analysis is a free online tool that recognizes most important transcription factors that are changing their activity in a set of samples.
Sample | Condition |
---|---|
SRR17857618_R1 | WT |
SRR17857618_R2 | WT |
SRR17857619_R1 | 36N_N |
SRR17857619_R2 | 36N_N |
SRR17857624 | KO |
Motif name | Z-value | Associated genes | Profile | Logo |
---|---|---|---|---|
Nrf1 | 9.42 |
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Smad3 | 7.71 |
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Hdx | 7.44 |
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Hcfc1_Six5_Smarcc2_Zfp143 | 7.30 |
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Pou2f2_Pou3f1 | 7.07 |
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Zfx_Zfp711 | 6.99 |
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Ybx1_Nfya_Nfyb_Nfyc_Cebpz | 6.87 |
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Pou1f1 | 6.76 |
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Wrnip1_Mta3_Rcor1 | 6.64 |
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Max_Mycn | 6.37 |
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In order to use ARMADA for infering putative regulatory networks from timecourse data, please set for every sample a timepoint, gap from previous timepoint and replicate. If you have only one replicate per sample you can leave replicate field unset.