GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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arcA | -0.82 | 8.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
sucAB Show fit | 1.49 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase dihydrolipoyltranssuccinylase |
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glpABC Show fit | 1.46 |
anaerobic glycerol-3-phosphate dehydrogenase subunit A anaerobic glycerol-3-phosphate dehydrogenase subunit C anaerobic glycerol-3-phosphate dehydrogenase subunit B |
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ompW Show fit | 1.40 |
outer membrane protein W |
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dctA Show fit | 1.38 |
C4 dicarboxylate / orotate:H+ symporter |
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sucABCD Show fit | 1.35 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase succinyl-CoA synthetase, β subunit dihydrolipoyltranssuccinylase succinyl-CoA synthetase, α subunit |
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aceBAK Show fit | 1.34 |
isocitrate dehydrogenase phosphatase / isocitrate dehydrogenase kinase malate synthase A isocitrate lyase |
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acnB Show fit | 1.15 |
bifunctional aconitate hydratase 2 and 2-methylisocitrate dehydratase |
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cydDC Show fit | 1.14 |
glutathione / L-cysteine exporter - CydC subunit glutathione / L-cysteine exporter - CydD subunit |
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puuAP Show fit | 1.07 |
putrescine:H+ symporter PuuP glutamate-putrescine ligase |
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sdhCDAB-sucABCD Show fit | 0.91 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase succinyl-CoA synthetase, β subunit dihydrolipoyltranssuccinylase succinyl-CoA synthetase, α subunit succinate:quinone oxidoreductase, FAD binding protein succinate:quinone oxidoreductase, membrane protein SdhC succinate:quinone oxidoreductase, iron-sulfur cluster binding protein succinate:quinone oxidoreductase, membrane protein SdhD |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.3 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
0.7 | 2.0 | GO:0006097 | glyoxylate cycle(GO:0006097) |
0.3 | 1.5 | GO:0015740 | dicarboxylic acid transport(GO:0006835) C4-dicarboxylate transport(GO:0015740) |
0.1 | 1.4 | GO:0046434 | organophosphate catabolic process(GO:0046434) |
0.4 | 1.1 | GO:0015846 | polyamine transport(GO:0015846) putrescine transport(GO:0015847) |
0.3 | 1.1 | GO:0000101 | sulfur amino acid transport(GO:0000101) |
0.2 | 0.7 | GO:0006479 | protein methylation(GO:0006479) protein alkylation(GO:0008213) |
0.2 | 0.6 | GO:0019563 | glycerol catabolic process(GO:0019563) |
0.1 | 0.6 | GO:0006004 | fucose metabolic process(GO:0006004) fucose catabolic process(GO:0019317) L-fucose metabolic process(GO:0042354) L-fucose catabolic process(GO:0042355) |
0.2 | 0.5 | GO:0005993 | trehalose catabolic process(GO:0005993) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 3.7 | GO:0045239 | tricarboxylic acid cycle enzyme complex(GO:0045239) dihydrolipoyl dehydrogenase complex(GO:0045240) oxoglutarate dehydrogenase complex(GO:0045252) |
0.1 | 1.3 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.0 | 1.2 | GO:0044462 | external encapsulating structure part(GO:0044462) |
0.0 | 0.9 | GO:1904949 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
0.1 | 0.8 | GO:0098567 | periplasmic side of plasma membrane(GO:0098567) |
0.1 | 0.3 | GO:0009380 | excinuclease repair complex(GO:0009380) |
0.0 | 0.3 | GO:0019898 | extrinsic component of membrane(GO:0019898) |
0.0 | 0.1 | GO:0015934 | large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 3.7 | GO:0016624 | dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) oxoglutarate dehydrogenase (succinyl-transferring) activity(GO:0004591) oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor(GO:0016624) S-succinyltransferase activity(GO:0016751) |
0.3 | 1.5 | GO:0015141 | dicarboxylic acid transmembrane transporter activity(GO:0005310) fumarate transmembrane transporter activity(GO:0015138) succinate transmembrane transporter activity(GO:0015141) C4-dicarboxylate transmembrane transporter activity(GO:0015556) |
0.4 | 1.3 | GO:0016208 | AMP binding(GO:0016208) |
0.4 | 1.2 | GO:0016901 | oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor(GO:0016901) |
0.2 | 1.1 | GO:0016880 | acid-ammonia (or amide) ligase activity(GO:0016880) |
0.0 | 0.9 | GO:0051287 | NAD binding(GO:0051287) |
0.1 | 0.8 | GO:0005319 | lipid transporter activity(GO:0005319) |
0.1 | 0.7 | GO:0008276 | protein methyltransferase activity(GO:0008276) |
0.1 | 0.6 | GO:1902670 | carbon dioxide binding(GO:1902670) |
0.0 | 0.6 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 0.9 | REACTOME TCA CYCLE AND RESPIRATORY ELECTRON TRANSPORT | Genes involved in The citric acid (TCA) cycle and respiratory electron transport |