GSE80451: E.coli grown aerobically and anaerobically

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
csgD Links RegulonDB EcoCyc	csgD	CsgD DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
csgD		0.84	7.7e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
wrbA-yccJ Show fit	2.13		wrbA Links RegulonDB EcoCyc Show fit yccJ Links RegulonDB EcoCyc Show fit	NAD(P)H:quinone oxidoreductase predicted protein
iraP Show fit	1.42		iraP Links RegulonDB EcoCyc Show fit	anti-adaptor protein for σS stabilization
yccT Show fit	1.41		yccT Links RegulonDB EcoCyc Show fit	conserved protein
nlpA Show fit	0.99		nlpA Links RegulonDB EcoCyc Show fit	lipoprotein-28
pepD Show fit	0.63		pepD Links RegulonDB EcoCyc Show fit	peptidase D

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	1.4	GO:0042177	negative regulation of catabolic process(GO:0009895) regulation of protein catabolic process(GO:0042176) negative regulation of protein catabolic process(GO:0042177)
0.2	1.0	GO:0000101	sulfur amino acid transport(GO:0000101)
0.2	0.6	GO:0043171	peptide catabolic process(GO:0043171)
0.1	2.1	GO:0051289	protein tetramerization(GO:0051262) protein homotetramerization(GO:0051289)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.1	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655)
0.4	1.4	GO:0043856	anti-sigma factor antagonist activity(GO:0043856)
0.2	0.6	GO:0008235	metalloexopeptidase activity(GO:0008235)