GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
fnr | 0.79 | 1.1e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
cydAB Show fit | 1.58 |
cytochrome bd-I terminal oxidase subunit I cytochrome bd-I terminal oxidase subunit II |
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arcA Show fit | 1.14 |
ArcA transcriptional dual regulator |
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narK Show fit | 0.68 |
nitrate:nitrite antiporter NarK |
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sodA Show fit | 0.67 |
superoxide dismutase (Mn) |
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garPLRK-rnpB Show fit | 0.58 |
α-dehydro-β-deoxy-D-glucarate aldolase RnpB tartronate semialdehyde reductase glycerate kinase I galactarate / glucarate / glycerate transporter GarP |
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moaABCDE Show fit | 0.51 |
molybdopterin synthase large subunit molybdopterin synthase small subunit cyclic pyranopterin monophosphate synthase MoaB protein GTP 3',8'-cyclase |
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bcsBZ Show fit | 0.49 |
cellulose synthase, periplasmic subunit endo-1,4-D-glucanase |
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pitA Show fit | 0.48 |
metal phosphate:H+ symporter PitA |
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ompX Show fit | 0.48 |
outer membrane protein X |
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emrKY Show fit | 0.45 |
EmrKY multidrug efflux pump - membrane subunit EmrKY-TolC multidrug efflux pump - membrane fusion protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.5 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
0.0 | 0.8 | GO:0007165 | signal transduction(GO:0007165) |
0.2 | 0.7 | GO:0000303 | response to superoxide(GO:0000303) superoxide metabolic process(GO:0006801) |
0.2 | 0.6 | GO:0046039 | GTP metabolic process(GO:0046039) |
0.2 | 0.6 | GO:0015707 | nitrite transport(GO:0015707) |
0.2 | 0.6 | GO:0019579 | aldaric acid metabolic process(GO:0019577) aldaric acid catabolic process(GO:0019579) |
0.2 | 0.5 | GO:0071941 | nitrogen cycle metabolic process(GO:0071941) |
0.2 | 0.5 | GO:0015710 | tellurite transport(GO:0015710) |
0.2 | 0.5 | GO:0006108 | malate metabolic process(GO:0006108) |
0.1 | 0.5 | GO:0006531 | aspartate metabolic process(GO:0006531) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.2 | GO:0070069 | cytochrome complex(GO:0070069) |
0.2 | 0.5 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.1 | 0.4 | GO:0005576 | extracellular region(GO:0005576) |
0.0 | 0.2 | GO:0015934 | large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 0.1 | GO:0031237 | intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 1.6 | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
0.2 | 1.1 | GO:0015563 | uptake transmembrane transporter activity(GO:0015563) |
0.2 | 1.1 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
0.2 | 0.7 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
0.1 | 0.5 | GO:0008940 | nitrate reductase activity(GO:0008940) |
0.1 | 0.5 | GO:0016662 | oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662) |
0.1 | 0.5 | GO:0016783 | sulfurtransferase activity(GO:0016783) |
0.1 | 0.5 | GO:0090079 | translation repressor activity, nucleic acid binding(GO:0000900) translation regulator activity, nucleic acid binding(GO:0090079) |
0.0 | 0.5 | GO:0008028 | monocarboxylic acid transmembrane transporter activity(GO:0008028) |
0.0 | 0.5 | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553) |