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GSE80451: E.coli grown aerobically and anaerobically

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Results for FlhDC

Z-value: 1.06

Transcription factors associated with FlhDC

Gene Symbol Gene ID Gene Info
flhC
flhC DNA-binding transcriptional dual regulator FlhC
flhD
flhD DNA-binding transcriptional dual regulator FlhD

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
flhD0.894.4e-02Click!
flhC0.894.4e-02Click!

Activity profile of FlhDC motif

Sorted Z-values of FlhDC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
glpABC 4.37
glpA
glpC
glpB
anaerobic glycerol-3-phosphate dehydrogenase subunit A
anaerobic glycerol-3-phosphate dehydrogenase subunit C
anaerobic glycerol-3-phosphate dehydrogenase subunit B
mglBAC 2.13
mglA
mglB
mglC
D-galactose / D-galactoside ABC transporter - ATP binding subunit
D-galactose / D-galactoside ABC transporter - periplasmic binding protein
D-galactose / D-galactoside ABC transporter - membrane subunit
flhBAE 1.30
flhB
flhA
flhE
flagellar biosynthesis protein FlhB
flagellar biosynthesis protein FlhA
flagellar protein
mdh 1.11
mdh
malate dehydrogenase
nrfABCDEFG 0.90
nrfF
nrfG
nrfD
nrfE
nrfB
nrfC
nrfA
activator of formate-dependent nitrite reductase complex
NrfG
formate dependent nitrite reductase - NrfD subunit
formate-dependent nitrite reductase; possible assembly function
formate-dependent nitrite reductase - penta-heme cytochrome c
formate-dependent nitrite reductase, 4Fe-4S subunit
formate dependent nitrite reductase - NrfA subunit
yecR 0.75
yecR
predicted protein
ycgR 0.48
ycgR
molecular brake that regulates flagellar motility in response to c-di-GMP
ppdAB-ygdB-ppdC-recC 0.32
ppdA
ppdB
ppdC
ygdB
recC
conserved protein
conserved protein
predicted protein
predicted protein
RecC
pdeH 0.30
pdeH
c-di-GMP phosphodiesterase
napFDAGHBC-ccmABCDEFGH 0.16
napG
napF
napD
napC
ccmH
napA
ccmE
ccmD
ccmG
ccmF
ccmA
ccmC
ccmB
napH
napB
ferredoxin-type protein
ferredoxin-type protein
signal peptide-binding chaperone for NapA
periplasmic nitrate reductase, cytochrome c protein
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH
large subunit of periplasmic nitrate reductase, molybdoprotein
membrane anchored periplasmic heme chaperone CcmE
ABC complex for formation and release of holoCcmE - membrane subunit CcmD
holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG
holocytochrome c synthetase - CcmF subunit
ABC complex for formation and release of holoCcmE - ATP binding subunit
ABC complex for formation and release of holoCcmE - membrane subunit CcmC
ABC complex for formation and release of holoCcmE - membrane subunit CcmB
ferredoxin-type protein
subunit of periplasmic nitrate reductase, cytochrome c550 protein
hydN-hypF 0.06
hypF
hydN
hydrogenase maturation protein, carbamoyltransferase
putative electron transport protein HydN

Network of associatons between targets according to the STRING database.

First level regulatory network of FlhDC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 GO:0015765 methylgalactoside transport(GO:0015765)
0.4 5.3 GO:0022900 electron transport chain(GO:0022900)
0.4 1.1 GO:0006108 malate metabolic process(GO:0006108)
0.1 0.8 GO:1902021 regulation of bacterial-type flagellum-dependent cell motility(GO:1902021)
0.1 0.3 GO:0006952 defense response(GO:0006952) clearance of foreign intracellular DNA(GO:0044355)
0.1 0.7 GO:0044780 bacterial-type flagellum assembly(GO:0044780) bacterial-type flagellum organization(GO:0044781)
0.1 0.2 GO:0018063 protein-heme linkage(GO:0017003) cytochrome complex assembly(GO:0017004) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0042995 cell projection(GO:0042995)
0.2 4.4 GO:1990204 oxidoreductase complex(GO:1990204)
0.1 0.3 GO:0009338 exodeoxyribonuclease V complex(GO:0009338)
0.1 0.2 GO:0031235 intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235)
0.1 1.1 GO:0019898 extrinsic component of membrane(GO:0019898)
0.0 1.3 GO:0030288 outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.5 4.4 GO:0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor(GO:0016901)
0.7 2.1 GO:0015592 methylgalactoside transmembrane transporter activity(GO:0015592)
0.2 0.9 GO:0016662 oxidoreductase activity, acting on other nitrogenous compounds as donors, cytochrome as acceptor(GO:0016662)
0.1 0.3 GO:0008854 exodeoxyribonuclease V activity(GO:0008854)
0.1 0.5 GO:0035438 cyclic nucleotide binding(GO:0030551) cyclic-di-GMP binding(GO:0035438)
0.1 0.3 GO:0071111 cyclic-guanylate-specific phosphodiesterase activity(GO:0071111)
0.1 0.2 GO:0005048 signal sequence binding(GO:0005048)
0.0 1.1 GO:0016614 oxidoreductase activity, acting on CH-OH group of donors(GO:0016614)
0.0 0.1 GO:0016743 carboxyl- or carbamoyltransferase activity(GO:0016743)