GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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fur | -0.84 | 7.6e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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feoABC Show fit | 3.66 |
Fe2+ transporter FeoB predicted DNA-binding transcriptional regulator ferrous iron transport protein A |
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ompF Show fit | 3.05 |
outer membrane porin F |
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gdhA Show fit | 2.90 |
glutamate dehydrogenase |
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tonB Show fit | 2.73 |
TonB energy transducing system - TonB subunit |
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aspC Show fit | 2.41 |
aspartate aminotransferase, PLP-dependent |
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nrdHIEF Show fit | 2.25 |
glutaredoxin-like protein flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase ribonucleoside-diphosphate reductase 2, α subunit ribonucleoside-diphosphate reductase 2, β subunit |
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pyrC Show fit | 2.23 |
dihydroorotase |
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sdhCDAB-sucABCD Show fit | 2.18 |
subunit of E1(0) component of 2-oxoglutarate dehydrogenase succinyl-CoA synthetase, β subunit dihydrolipoyltranssuccinylase succinyl-CoA synthetase, α subunit succinate:quinone oxidoreductase, FAD binding protein succinate:quinone oxidoreductase, membrane protein SdhC succinate:quinone oxidoreductase, iron-sulfur cluster binding protein succinate:quinone oxidoreductase, membrane protein SdhD |
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cyoABCDE Show fit | 1.98 |
cytochrome bo terminal oxidase subunit II cytochrome bo terminal oxidase subunit III cytochrome bo terminal oxidase subunit I heme O synthase cytochrome bo terminal oxidase subunit IV |
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metH Show fit | 1.95 |
cobalamin-dependent methionine synthase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 7.5 | GO:0098662 | inorganic cation transmembrane transport(GO:0098662) |
0.4 | 4.0 | GO:0043650 | glutamate metabolic process(GO:0006536) dicarboxylic acid biosynthetic process(GO:0043650) |
0.9 | 3.4 | GO:0015889 | cobalamin transport(GO:0015889) |
0.3 | 3.0 | GO:0006855 | drug transmembrane transport(GO:0006855) |
0.8 | 2.4 | GO:0046417 | chorismate metabolic process(GO:0046417) |
0.7 | 2.2 | GO:0009263 | deoxyribonucleotide biosynthetic process(GO:0009263) |
0.4 | 2.2 | GO:0019856 | 'de novo' pyrimidine nucleobase biosynthetic process(GO:0006207) pyrimidine nucleotide biosynthetic process(GO:0006221) pyrimidine nucleobase biosynthetic process(GO:0019856) |
0.4 | 2.2 | GO:0017004 | cytochrome complex assembly(GO:0017004) |
0.7 | 2.0 | GO:0035999 | tetrahydrofolate interconversion(GO:0035999) |
0.4 | 1.2 | GO:0031365 | N-terminal protein amino acid modification(GO:0031365) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 3.0 | GO:0046930 | pore complex(GO:0046930) |
0.3 | 2.7 | GO:0071575 | integral component of external side of plasma membrane(GO:0071575) |
0.7 | 2.2 | GO:0045252 | tricarboxylic acid cycle enzyme complex(GO:0045239) dihydrolipoyl dehydrogenase complex(GO:0045240) oxoglutarate dehydrogenase complex(GO:0045252) respiratory chain complex II(GO:0045273) plasma membrane respiratory chain complex II(GO:0045274) |
0.1 | 2.2 | GO:0044445 | cytosolic part(GO:0044445) |
0.7 | 2.0 | GO:0070069 | cytochrome complex(GO:0070069) |
0.3 | 1.2 | GO:0005576 | extracellular region(GO:0005576) |
0.1 | 1.2 | GO:1990234 | transferase complex(GO:1990234) |
0.0 | 0.2 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 4.5 | GO:0031992 | energy transducer activity(GO:0031992) |
1.0 | 4.2 | GO:0048039 | ubiquinone binding(GO:0048039) |
0.7 | 4.0 | GO:0016638 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) |
0.5 | 2.4 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
0.2 | 2.4 | GO:0008483 | transaminase activity(GO:0008483) |
0.7 | 2.2 | GO:0061731 | ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731) |
0.6 | 2.2 | GO:0016812 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812) |
0.5 | 2.0 | GO:0008172 | S-methyltransferase activity(GO:0008172) |
0.5 | 1.4 | GO:0022885 | bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912) |
0.2 | 1.2 | GO:0008080 | N-acetyltransferase activity(GO:0008080) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 2.2 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |