GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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hns | -0.86 | 6.1e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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rrsC-gltU-rrlC-rrfC Show fit | 3.25 |
rrlC 23S ribosomal RNA tRNAgltU rrfC 5S ribosomal RNA rrsC 16S ribosomal RNA |
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rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Show fit | 3.24 |
rrlD 23S ribosomal RNA tRNAileU tRNAalaU tRNAthrV rrfF 5S ribosomal RNA rrsD 16S ribosomal RNA rrfD 5S ribosomal RNA |
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rrsG-gltW-rrlG-rrfG Show fit | 3.21 |
rrlG 23S ribosomal RNA tRNAgltW rrfG 5S ribosomal RNA rrsG 16S ribosomal RNA |
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rrsB-gltT-rrlB-rrfB Show fit | 3.21 |
rrlB 23S ribosomal RNA tRNAgltT rrfB 5S ribosomal RNA rrsB 16S ribosomal RNA |
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rrsH-ileV-alaV-rrlH-rrfH Show fit | 3.12 |
rrlH 23S ribosomal RNA rrfH 5S ribosomal RNA rrsH 16S ribosomal RNA tRNAileV tRNAalaV |
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fimB Show fit | 1.79 |
regulator for fimA |
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hchA Show fit | 1.62 |
amino acid deglycase Hsp31 |
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cspA Show fit | 1.50 |
CspA DNA-binding transcriptional activator |
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asr Show fit | 0.91 |
acid shock protein |
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cmoM-mukFEB Show fit | 0.90 |
tRNA cmo5U34 methyltransferase cell division protein involved in chromosome partitioning Ca2+-binding protein involved in chromosome partitioning protein involved in chromosome partitioning |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 2.7 | GO:0015074 | DNA integration(GO:0015074) |
0.5 | 1.6 | GO:0019243 | methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) methylglyoxal catabolic process to lactate(GO:0061727) |
0.5 | 1.5 | GO:0060567 | negative regulation of protein complex disassembly(GO:0043242) negative regulation of DNA-templated transcription, termination(GO:0060567) |
0.3 | 0.9 | GO:0002098 | tRNA wobble uridine modification(GO:0002098) |
0.2 | 0.9 | GO:0010043 | response to zinc ion(GO:0010043) |
0.2 | 0.7 | GO:0034035 | guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035) ncRNA catabolic process(GO:0034661) |
0.0 | 0.7 | GO:0051254 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
0.1 | 0.6 | GO:0006591 | ornithine metabolic process(GO:0006591) arginine biosynthetic process via ornithine(GO:0042450) |
0.0 | 0.6 | GO:0034219 | carbohydrate transmembrane transport(GO:0034219) |
0.2 | 0.5 | GO:0006535 | cysteine biosynthetic process from serine(GO:0006535) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.1 | GO:0043190 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
0.2 | 0.9 | GO:0005694 | chromosome(GO:0005694) chromosomal part(GO:0044427) |
0.1 | 0.7 | GO:0005618 | cell wall(GO:0005618) |
0.0 | 0.1 | GO:0005576 | extracellular region(GO:0005576) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.5 | GO:0001070 | RNA binding transcription factor activity(GO:0001070) transcription antitermination factor activity, RNA binding(GO:0001072) |
0.0 | 1.4 | GO:0016836 | hydro-lyase activity(GO:0016836) |
0.2 | 1.1 | GO:0001216 | transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216) |
0.0 | 1.1 | GO:0001071 | nucleic acid binding transcription factor activity(GO:0001071) |
0.3 | 0.9 | GO:0008175 | tRNA methyltransferase activity(GO:0008175) |
0.2 | 0.7 | GO:0008728 | GTP diphosphokinase activity(GO:0008728) guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity(GO:0008893) diphosphoric monoester hydrolase activity(GO:0016794) |
0.2 | 0.6 | GO:0008706 | 6-phospho-beta-glucosidase activity(GO:0008706) |
0.2 | 0.6 | GO:0004777 | succinate-semialdehyde dehydrogenase (NAD+) activity(GO:0004777) |
0.2 | 0.5 | GO:0005275 | amine transmembrane transporter activity(GO:0005275) transmembrane receptor activity(GO:0099600) |
0.1 | 0.5 | GO:0080146 | L-cysteine desulfhydrase activity(GO:0080146) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.7 | REACTOME RIG I MDA5 MEDIATED INDUCTION OF IFN ALPHA BETA PATHWAYS | Genes involved in RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways |