GSE80451: E.coli grown aerobically and anaerobically
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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osmY Show fit | 3.20 |
periplasmic chaperone, osmotically induced |
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ompC Show fit | 2.70 |
outer membrane protein C |
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sodA Show fit | 2.30 |
superoxide dismutase (Mn) |
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narK Show fit | 2.29 |
nitrate:nitrite antiporter NarK |
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ihfA Show fit | 2.09 |
integration host factor (IHF), α subunit |
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osmE Show fit | 1.94 |
osmotically inducible protein OsmE |
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uspB Show fit | 1.90 |
predicted universal stress (ethanol tolerance) protein B |
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dps Show fit | 1.78 |
stationary phase nucleoid protein that sequesters iron and protects DNA from damage |
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mtr Show fit | 1.76 |
tryptohan / indole:H+ symporter Mtr |
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sufABCDSE Show fit | 1.67 |
SufB component of SufBCD Fe-S cluster scaffold complex SufC component of SufBCD Fe-S cluster scaffold complex Fe-S transport protein in Fe-S cluster assembly SufD component of SufBCD Fe-S cluster scaffold complex sulfur acceptor for SufS cysteine desulfurase L-cysteine desulfurase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 3.1 | GO:0006972 | hyperosmotic response(GO:0006972) |
0.8 | 2.5 | GO:0006801 | response to superoxide(GO:0000303) superoxide metabolic process(GO:0006801) |
0.8 | 2.3 | GO:0015707 | nitrite transport(GO:0015707) |
0.2 | 2.3 | GO:0006970 | response to osmotic stress(GO:0006970) |
0.7 | 2.1 | GO:0046379 | extracellular polysaccharide biosynthetic process(GO:0045226) extracellular polysaccharide metabolic process(GO:0046379) |
0.6 | 1.9 | GO:0097305 | response to alcohol(GO:0097305) |
0.6 | 1.8 | GO:0015827 | tryptophan transport(GO:0015827) |
0.3 | 1.7 | GO:0097428 | protein maturation by iron-sulfur cluster transfer(GO:0097428) |
0.4 | 1.3 | GO:0006007 | glucose catabolic process(GO:0006007) |
0.4 | 1.3 | GO:0071941 | nitrogen cycle metabolic process(GO:0071941) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 4.2 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.4 | 3.5 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
0.0 | 2.4 | GO:0005886 | plasma membrane(GO:0005886) |
0.0 | 1.4 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
0.0 | 1.4 | GO:0016020 | membrane(GO:0016020) |
0.4 | 1.3 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.2 | 0.6 | GO:0042995 | cell projection(GO:0042995) |
0.1 | 0.5 | GO:0098803 | respiratory chain(GO:0070469) plasma membrane respiratory chain(GO:0070470) respiratory chain complex(GO:0098803) |
0.0 | 0.4 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.1 | 0.3 | GO:0044427 | chromosome(GO:0005694) chromosomal part(GO:0044427) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.8 | 2.5 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
0.8 | 2.3 | GO:0015113 | nitrite transmembrane transporter activity(GO:0015113) |
0.6 | 1.8 | GO:0015196 | L-tryptophan transmembrane transporter activity(GO:0015196) |
0.5 | 1.6 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
0.3 | 1.6 | GO:0016783 | sulfurtransferase activity(GO:0016783) |
0.2 | 1.4 | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646) |
0.4 | 1.3 | GO:0048039 | oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor(GO:0016901) ubiquinone binding(GO:0048039) |
0.3 | 1.3 | GO:0008940 | nitrate reductase activity(GO:0008940) metallochaperone activity(GO:0016530) |
0.0 | 1.2 | GO:0005506 | iron ion binding(GO:0005506) |
0.3 | 1.1 | GO:0043879 | glycolate transmembrane transporter activity(GO:0043879) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.7 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |