GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
narL | -0.94 | 1.8e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
ompW Show fit | 0.60 |
outer membrane protein W |
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cydDC Show fit | 0.52 |
glutathione / L-cysteine exporter - CydC subunit glutathione / L-cysteine exporter - CydD subunit |
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dcuSR Show fit | 0.34 |
DcuR transcriptional activator DcuS sensory histidine kinase |
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hybOABCDEFG Show fit | 0.26 |
hydrogenase 2 accessory protein protein involved with the maturation of hydrogenases 1 and 2 hydrogenase 2-specific chaperone predicted maturation peptidase for hydrogenase 2 hydrogenase 2, large subunit hydrogenase 2 - integral membrane subunit HybB hydrogenase 2 - [Fe-S] binding, ferredoxin-type component HybA hydrogenase 2, small subunit |
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ytfE Show fit | 0.23 |
iron-sulfur cluster repair protein YtfE |
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fdnGHI Show fit | 0.22 |
formate dehydrogenase N, β subunit formate dehydrogenase N, γ subunit formate dehydrogenase N, α subunit |
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dpiBA Show fit | 0.20 |
DpiB sensory histidine kinase DpiA transcriptional dual regulator |
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hcp-hcr Show fit | 0.17 |
NADH oxidoreductase hybrid-cluster protein |
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norVW Show fit | 0.16 |
NADH:flavorubredoxin reductase flavorubredoxin |
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ubiCA Show fit | 0.12 |
chorismate lyase 4-hydroxybenzoate octaprenyltransferase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | GO:0006857 | sulfur amino acid transport(GO:0000101) oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672) |
0.1 | 0.3 | GO:0046209 | nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210) |
0.1 | 0.3 | GO:0019563 | glycerol catabolic process(GO:0019563) |
0.1 | 0.3 | GO:0015942 | formate metabolic process(GO:0015942) |
0.0 | 0.3 | GO:0000160 | phosphorelay signal transduction system(GO:0000160) |
0.1 | 0.2 | GO:0071310 | cellular response to organic substance(GO:0071310) |
0.1 | 0.2 | GO:0030091 | protein repair(GO:0030091) |
0.0 | 0.1 | GO:0016485 | protein processing(GO:0016485) |
0.0 | 0.1 | GO:0006744 | ubiquinone metabolic process(GO:0006743) ubiquinone biosynthetic process(GO:0006744) ketone biosynthetic process(GO:0042181) quinone metabolic process(GO:1901661) quinone biosynthetic process(GO:1901663) |
0.0 | 0.1 | GO:0018198 | peptidyl-cysteine modification(GO:0018198) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.6 | GO:1904949 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
0.0 | 0.6 | GO:0044462 | cell outer membrane(GO:0009279) external encapsulating structure part(GO:0044462) |
0.0 | 0.3 | GO:0098567 | periplasmic side of plasma membrane(GO:0098567) |
0.0 | 0.2 | GO:0009897 | external side of plasma membrane(GO:0009897) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | GO:0005319 | lipid transporter activity(GO:0005319) |
0.0 | 0.4 | GO:0005506 | iron ion binding(GO:0005506) |
0.1 | 0.3 | GO:1902670 | carbon dioxide binding(GO:1902670) |
0.0 | 0.3 | GO:0001140 | transcriptional activator activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001140) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216) |
0.0 | 0.2 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
0.0 | 0.2 | GO:0004601 | peroxidase activity(GO:0004601) oxidoreductase activity, acting on peroxide as acceptor(GO:0016684) |
0.0 | 0.1 | GO:0015099 | nickel cation transmembrane transporter activity(GO:0015099) |
0.0 | 0.1 | GO:0004659 | prenyltransferase activity(GO:0004659) |
0.0 | 0.1 | GO:0016151 | nickel cation binding(GO:0016151) |
0.0 | 0.1 | GO:0004333 | fumarate hydratase activity(GO:0004333) |