GSE80451: E.coli grown aerobically and anaerobically
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
sufABCDSE Show fit | 2.46 |
SufB component of SufBCD Fe-S cluster scaffold complex SufC component of SufBCD Fe-S cluster scaffold complex Fe-S transport protein in Fe-S cluster assembly SufD component of SufBCD Fe-S cluster scaffold complex sulfur acceptor for SufS cysteine desulfurase L-cysteine desulfurase |
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thrS-infC-rpmI-rplT-pheMST-ihfA Show fit | 2.39 |
phenylalanine-tRNA ligase α-chain 50S ribosomal subunit protein L20 protein chain initiation factor IF-3 phenylalanyl-tRNA synthetase (pheST) operon leader peptide 50S ribosomal subunit protein L35 phenylalanine-tRNA ligase β-chain integration host factor (IHF), α subunit threonine-tRNA ligase |
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ndh Show fit | 1.75 |
NADH:quinone oxidoreductase II |
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feaB Show fit | 1.28 |
phenylacetaldehyde dehydrogenase |
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ygbA Show fit | 1.28 |
predicted protein |
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norR Show fit | 1.07 |
NorR DNA-binding transcriptional dual regulator |
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lrp Show fit | 1.02 |
Lrp transcriptional dual regulator |
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hycABCDEFGHI Show fit | 0.79 |
hydrogenase 3, membrane subunit hydrogenase 3, large subunit formate hydrogenlyase complex iron-sulfur protein hydrogenase 3 and formate hydrogenlyase complex, HycG subunit regulator of the transcriptional regulator FhlA hydrogenase 3, Fe-S subunit hydrogenase 3, membrane subunit protein required for maturation of hydrogenase 3 hydrogenase 3 maturation protease |
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bamE Show fit | 0.74 |
Outer Membrane Protein Assembly Complex - BamE subunit |
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feaR Show fit | 0.58 |
FeaR DNA-binding transcriptional activator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.5 | GO:0097428 | protein maturation by iron-sulfur cluster transfer(GO:0097428) |
0.4 | 1.7 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
0.3 | 1.6 | GO:0006446 | regulation of translational initiation(GO:0006446) negative regulation of translational initiation(GO:0045947) |
0.2 | 1.5 | GO:0031334 | positive regulation of protein complex assembly(GO:0031334) positive regulation of DNA-templated transcription, initiation(GO:2000144) |
0.4 | 1.3 | GO:0042178 | xenobiotic catabolic process(GO:0042178) |
0.2 | 1.0 | GO:0043200 | alanine metabolic process(GO:0006522) leucine metabolic process(GO:0006551) pyruvate family amino acid metabolic process(GO:0009078) leucine biosynthetic process(GO:0009098) response to amino acid(GO:0043200) |
0.2 | 0.8 | GO:0016485 | protein processing(GO:0016485) |
0.1 | 0.7 | GO:0051205 | protein insertion into membrane(GO:0051205) |
0.0 | 0.6 | GO:1903508 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
0.1 | 0.5 | GO:0046131 | pyrimidine ribonucleoside metabolic process(GO:0046131) pyrimidine ribonucleoside catabolic process(GO:0046133) pyrimidine nucleoside catabolic process(GO:0046135) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 2.4 | GO:0015934 | large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625) |
0.1 | 2.1 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.1 | 0.8 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
0.1 | 0.7 | GO:1990063 | Bam protein complex(GO:1990063) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 2.5 | GO:0016783 | sulfurtransferase activity(GO:0016783) |
0.5 | 2.4 | GO:0000049 | tRNA binding(GO:0000049) |
0.6 | 1.7 | GO:0008137 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
0.5 | 1.5 | GO:0035326 | bacterial-type RNA polymerase enhancer sequence-specific DNA binding(GO:0001150) enhancer sequence-specific DNA binding(GO:0001158) enhancer binding(GO:0035326) |
0.2 | 1.3 | GO:0004029 | aldehyde dehydrogenase (NAD) activity(GO:0004029) |
0.0 | 1.1 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |
0.1 | 0.8 | GO:0019239 | deaminase activity(GO:0019239) |
0.1 | 0.8 | GO:0016151 | nickel cation binding(GO:0016151) |
0.0 | 0.6 | GO:0000987 | bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.1 | 0.4 | GO:0008194 | UDP-glycosyltransferase activity(GO:0008194) |