Project

GSE80451: E.coli grown aerobically and anaerobically

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Results for NsrR

Z-value: 1.12

Transcription factors associated with NsrR

Gene Symbol Gene ID Gene Info
nsrR
nsrR NsrR DNA-binding transcriptional repressor

Activity profile of NsrR motif

Sorted Z-values of NsrR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
sufABCDSE 2.46
sufB
sufC
sufA
sufD
sufE
sufS
SufB component of SufBCD Fe-S cluster scaffold complex
SufC component of SufBCD Fe-S cluster scaffold complex
Fe-S transport protein in Fe-S cluster assembly
SufD component of SufBCD Fe-S cluster scaffold complex
sulfur acceptor for SufS cysteine desulfurase
L-cysteine desulfurase
thrS-infC-rpmI-rplT-pheMST-ihfA 2.39
pheS
rplT
infC
pheM
rpmI
pheT
ihfA
thrS
phenylalanine-tRNA ligase α-chain
50S ribosomal subunit protein L20
protein chain initiation factor IF-3
phenylalanyl-tRNA synthetase (pheST) operon leader peptide
50S ribosomal subunit protein L35
phenylalanine-tRNA ligase β-chain
integration host factor (IHF), α subunit
threonine-tRNA ligase
ndh 1.75
ndh
NADH:quinone oxidoreductase II
feaB 1.28
feaB
phenylacetaldehyde dehydrogenase
ygbA 1.28
ygbA
predicted protein
norR 1.07
norR
NorR DNA-binding transcriptional dual regulator
lrp 1.02
lrp
Lrp transcriptional dual regulator
hycABCDEFGHI 0.79
hycD
hycE
hycF
hycG
hycA
hycB
hycC
hycH
hycI
hydrogenase 3, membrane subunit
hydrogenase 3, large subunit
formate hydrogenlyase complex iron-sulfur protein
hydrogenase 3 and formate hydrogenlyase complex, HycG subunit
regulator of the transcriptional regulator FhlA
hydrogenase 3, Fe-S subunit
hydrogenase 3, membrane subunit
protein required for maturation of hydrogenase 3
hydrogenase 3 maturation protease
bamE 0.74
bamE
Outer Membrane Protein Assembly Complex - BamE subunit
feaR 0.58
feaR
FeaR DNA-binding transcriptional activator
cdd 0.55
cdd
cytidine deaminase
waaH 0.43
waaH
UDP-glucuronate:LPS(HepIII) glycosyltransferase
hypABCDE-fhlA 0.42
fhlA
hypE
hypD
hypA
hypC
hypB
FhlA transcriptional activator
hydrogenase maturation protein, carbamoyl dehydratase
HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor
accessory protein for nickel incorporation into hydrogenase 3
HypC, protein involved in hydrogenase 3 maturation
accessory protein for nickel incorporation into hydrogenase isoenzymes
yeaE 0.39
yeaE
methylglyoxal reductase
hypABCDE 0.34
hypE
hypD
hypA
hypC
hypB
hydrogenase maturation protein, carbamoyl dehydratase
HypD, scaffold protein for assembly of the Fe-(CN)2CO cofactor
accessory protein for nickel incorporation into hydrogenase 3
HypC, protein involved in hydrogenase 3 maturation
accessory protein for nickel incorporation into hydrogenase isoenzymes
sodB 0.33
sodB
superoxide dismutase (Fe)
pgpC-tadA 0.28
pgpC
tadA
phosphatidylglycerophosphatase C
tRNA-specific adenosine deaminase
grxD 0.25
grxD
glutaredoxin 4
yeaR-yoaG 0.21
yoaG
yeaR
predicted protein
conserved protein
tehAB 0.14
tehA
tehB
tellurite resistance protein / ethidium exporter
tellurite methyltransferase
dsdC 0.08
dsdC
DsdC DNA-binding transcriptional dual regulator

Network of associatons between targets according to the STRING database.

First level regulatory network of NsrR

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.7 GO:0019646 aerobic electron transport chain(GO:0019646)
0.4 1.3 GO:0042178 xenobiotic catabolic process(GO:0042178)
0.4 2.5 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.3 1.6 GO:0006446 regulation of translational initiation(GO:0006446) negative regulation of translational initiation(GO:0045947)
0.2 1.5 GO:0031334 positive regulation of protein complex assembly(GO:0031334) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.2 1.0 GO:0043200 alanine metabolic process(GO:0006522) leucine metabolic process(GO:0006551) pyruvate family amino acid metabolic process(GO:0009078) leucine biosynthetic process(GO:0009098) response to amino acid(GO:0043200)
0.2 0.3 GO:0046892 protein dehydration(GO:0018249) peptidyl-S-carbamoyl-L-cysteine dehydration(GO:0046892)
0.2 0.8 GO:0016485 protein processing(GO:0016485)
0.1 0.3 GO:0006801 response to superoxide(GO:0000303) superoxide metabolic process(GO:0006801)
0.1 0.7 GO:0051205 protein insertion into membrane(GO:0051205)
0.1 0.5 GO:0046131 pyrimidine ribonucleoside metabolic process(GO:0046131) pyrimidine ribonucleoside catabolic process(GO:0046133) pyrimidine nucleoside catabolic process(GO:0046135)
0.1 0.3 GO:0002097 tRNA wobble base modification(GO:0002097)
0.1 0.4 GO:0016036 cellular response to phosphate starvation(GO:0016036)
0.0 0.6 GO:1903508 positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 2.4 GO:0015934 large ribosomal subunit(GO:0015934) cytosolic large ribosomal subunit(GO:0022625)
0.1 0.7 GO:1990063 Bam protein complex(GO:1990063)
0.1 2.1 GO:1990204 oxidoreductase complex(GO:1990204)
0.1 0.8 GO:0031234 extrinsic component of cytoplasmic side of plasma membrane(GO:0031234)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.6 1.7 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.5 1.5 GO:0035326 bacterial-type RNA polymerase enhancer sequence-specific DNA binding(GO:0001150) enhancer sequence-specific DNA binding(GO:0001158) enhancer binding(GO:0035326)
0.5 2.4 GO:0000049 tRNA binding(GO:0000049)
0.4 2.5 GO:0016783 sulfurtransferase activity(GO:0016783)
0.2 1.3 GO:0004029 aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.2 0.3 GO:0070025 carbon monoxide binding(GO:0070025)
0.1 0.8 GO:0019239 deaminase activity(GO:0019239)
0.1 0.3 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.1 0.8 GO:0016151 nickel cation binding(GO:0016151)
0.1 0.4 GO:0008194 UDP-glycosyltransferase activity(GO:0008194)
0.0 0.6 GO:0000987 bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.0 1.1 GO:0043565 sequence-specific DNA binding(GO:0043565)
0.0 0.1 GO:0015562 efflux transmembrane transporter activity(GO:0015562)