GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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purR | 0.92 | 2.5e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
purEK Show fit | 11.25 |
N5-carboxyaminoimidazole ribonucleotide synthetase N5-carboxyaminoimidazole ribonucleotide mutase |
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glyA Show fit | 7.61 |
serine hydroxymethyltransferase |
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pyrC Show fit | 7.48 |
dihydroorotase |
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purA Show fit | 7.17 |
adenylosuccinate synthetase |
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purC Show fit | 7.08 |
phosphoribosylaminoimidazole-succinocarboxamide synthase |
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purL Show fit | 5.45 |
phosphoribosylformylglycinamide synthetase |
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prs Show fit | 5.38 |
ribose-phosphate diphosphokinase |
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carAB Show fit | 4.55 |
carbamoyl phosphate synthetase, β chain carbamoyl phosphate synthetase, α chain |
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cvpA-purF-ubiX Show fit | 4.45 |
membrane protein required for colicin V production amidophosphoribosyl transferase 3-octaprenyl-4-hydroxybenzoate carboxy-lyase partner protein |
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gcvTHP Show fit | 3.19 |
glycine cleavage system H protein glycine decarboxylase aminomethyltransferase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.2 | 12.6 | GO:0046040 | IMP metabolic process(GO:0046040) |
2.7 | 10.8 | GO:0006544 | glycine metabolic process(GO:0006544) glycine catabolic process(GO:0006546) |
2.0 | 9.9 | GO:0019856 | 'de novo' pyrimidine nucleobase biosynthetic process(GO:0006207) pyrimidine nucleobase biosynthetic process(GO:0019856) |
1.2 | 8.1 | GO:0006164 | purine nucleotide biosynthetic process(GO:0006164) |
0.5 | 7.1 | GO:0033014 | tetrapyrrole metabolic process(GO:0033013) tetrapyrrole biosynthetic process(GO:0033014) |
1.8 | 5.4 | GO:0006015 | 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391) |
1.0 | 3.1 | GO:0006208 | pyrimidine nucleobase catabolic process(GO:0006208) pyrimidine nucleobase transport(GO:0015855) |
0.1 | 2.9 | GO:0009408 | response to heat(GO:0009408) |
0.0 | 2.8 | GO:0006974 | cellular response to DNA damage stimulus(GO:0006974) |
2.6 | 2.6 | GO:1901070 | GMP biosynthetic process(GO:0006177) GMP metabolic process(GO:0046037) guanosine-containing compound biosynthetic process(GO:1901070) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 54.5 | GO:0005829 | cytosol(GO:0005829) |
0.1 | 3.2 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.2 | 2.9 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 25.5 | GO:0016879 | ligase activity, forming carbon-nitrogen bonds(GO:0016879) |
3.2 | 12.7 | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884) |
2.5 | 12.4 | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity(GO:0016742) |
1.9 | 7.5 | GO:0016812 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812) |
1.1 | 5.4 | GO:0042301 | phosphate ion binding(GO:0042301) |
0.4 | 4.4 | GO:0016763 | transferase activity, transferring pentosyl groups(GO:0016763) |
0.5 | 3.2 | GO:0031405 | oxidoreductase activity, acting on the CH-NH2 group of donors(GO:0016638) lipoic acid binding(GO:0031405) |
1.0 | 3.1 | GO:0015205 | pyrimidine nucleobase transmembrane transporter activity(GO:0005350) nucleobase transmembrane transporter activity(GO:0015205) |
1.0 | 2.9 | GO:0016842 | amidine-lyase activity(GO:0016842) |
0.4 | 1.6 | GO:0001141 | transcriptional repressor activity, bacterial-type RNA polymerase core promoter proximal region sequence-specific binding(GO:0001141) bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding(GO:0001217) |