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GSE80451: E.coli grown aerobically and anaerobically

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Results for Sigma24

Z-value: 0.56

Transcription factors associated with Sigma24

Gene Symbol Gene ID Gene Info
rpoE
rpoE RNA polymerase sigma factor RpoE

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rpoE-0.662.3e-01Click!

Activity profile of Sigma24 motif

Sorted Z-values of Sigma24 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
yraP 1.03
yraP
lipoprotein
ygiM 0.98
ygiM
predicted signal transduction protein (SH3 domain)
eptB 0.81
eptB
Kdo2-lipid A phosphoethanolamine 7''-transferase
yhjJ 0.71
yhjJ
predicted zinc-dependent peptidase
bamD 0.57
bamD
Outer Membrane Protein Assembly Complex - BamD subunit
greA 0.50
greA
transcription elongation factor GreA
ygiM-cca 0.48
cca
ygiM
fused tRNA nucleotidyltransferase / 2',3'-cyclic phosphodiesterase / 2' nucleotidase and phosphatase
predicted signal transduction protein (SH3 domain)
ibaG 0.48
ibaG
predicted DNA-binding transcriptional regulator
ytfJ 0.43
ytfJ
conserved protein
yggN 0.39
yggN
predicted protein
plsB 0.39
plsB
glycerol-3-phosphate acyltransferase
lgoR 0.35
lgoR
predicted DNA-binding transcriptional regulator
malQ 0.34
malQ
amylomaltase/amylomaltase/amylomaltase
rybB 0.29
rybB
RybB
yfeYX 0.26
yfeX
yfeY
porphyrinogen peroxidase
predicted outer membrane lipoprotein
psd-mscM 0.25
mscM
psd
mechanosensitive channel of miniconductance MscM
phosphatidylserine decarboxylase, proenzyme
micA 0.24
micA
MicA
yiaKLMNO-lyxK-sgbHUE 0.24
lyxK
sgbH
sgbE
sgbU
yiaK
yiaM
yiaL
yiaO
yiaN
L-xylulose kinase
3-keto-L-gulonate 6-phosphate decarboxylase
L-ribulose-5-phosphate 4-epimerase
predicted L-xylulose 5-phosphate 3-epimerase
2,3-diketo-L-gulonate reductase
2,3-diketo-L-gulonate:Na+ symporter - membrane subunit
conserved protein
2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein
2,3-diketo-L-gulonate:Na+ symporter - membrane subunit
yghF 0.24
yghF
predicted secretion pathway protein, C-type protein
bamC 0.20
bamC
Outer Membrane Protein Assembly Complex - BamC subunit
ahpF 0.20
ahpF
alkyl hydroperoxide reductase, AhpF component
fadM 0.20
fadM
thioesterase III
dsbC-recJ-prfB 0.20
recJ
dsbC
prfB
ssDNA-specific exonuclease RecJ
protein disulfide isomerase/protein disulfide oxidoreductase - DsbCreduced
peptide chain release factor RF2
insK 0.18
insK
IS150 conserved protein InsB
fusA-tufA 0.18
tufA
fusA
elongation factor Tu
elongation factor G
hcp-hcr 0.17
hcr
hcp
NADH oxidoreductase
hybrid-cluster protein
ecpR 0.17
ecpR
MatA DNA-binding transcriptional dual regulator
lhr 0.17
lhr
member of ATP-dependent helicase superfamily II
rpoH 0.15
rpoH
RNA polymerase, sigma 32 (sigma H) factor
bepA-yfgD 0.13
yfgD
bepA
predicted oxidoreductase
chaperone/protease involved in the maintenance of OM integrity
gspAB 0.13
gspB
gspA
calcium-binding protein required for initiation of chromosome replication
general secretory pathway component, cryptic
lpxD 0.13
lpxD
UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase
cyaR 0.13
cyaR
CyaR
yqjA-mzrA 0.07
yqjA
mzrA
membrane transport protein; required for proton-motive force (PMF) dependent drug efflux
MzrA
ftnB 0.05
ftnB
predicted ferritin-like protein
lpxP 0.04
lpxP
palmitoleoyl acyltransferase
degP 0.01
degP
serine protease Do

Network of associatons between targets according to the STRING database.

First level regulatory network of Sigma24

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0031123 RNA 3'-end processing(GO:0031123)
0.1 0.2 GO:0019324 L-lyxose metabolic process(GO:0019324)
0.1 0.3 GO:0071470 cellular response to osmotic stress(GO:0071470)
0.1 0.2 GO:0046209 nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210)
0.1 0.3 GO:0046352 disaccharide catabolic process(GO:0046352)
0.1 0.5 GO:0009103 lipopolysaccharide biosynthetic process(GO:0009103)
0.1 0.2 GO:0001121 transcription from bacterial-type RNA polymerase promoter(GO:0001121)
0.0 0.3 GO:0019520 aldonic acid metabolic process(GO:0019520) aldonic acid catabolic process(GO:0046176)
0.0 0.2 GO:0006415 translational termination(GO:0006415) cellular protein complex disassembly(GO:0043624)
0.0 0.2 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.0 0.2 GO:0006635 fatty acid beta-oxidation(GO:0006635)
0.0 0.1 GO:0031399 regulation of protein modification process(GO:0031399)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.3 GO:1990063 Bam protein complex(GO:1990063)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 GO:0001098 basal transcription machinery binding(GO:0001098) bacterial-type RNA polymerase holo enzyme binding(GO:0001108)
0.1 0.3 GO:0004133 glycogen debranching enzyme activity(GO:0004133)
0.1 0.5 GO:0070567 cytidylyltransferase activity(GO:0070567)
0.1 0.3 GO:0022836 gated channel activity(GO:0022836)
0.1 0.2 GO:0008742 L-ribulose-phosphate 4-epimerase activity(GO:0008742)
0.1 0.2 GO:0070402 NADPH binding(GO:0070402)
0.1 0.2 GO:0016790 CoA hydrolase activity(GO:0016289) thiolester hydrolase activity(GO:0016790)
0.1 0.2 GO:0008297 single-stranded DNA exodeoxyribonuclease activity(GO:0008297) 5'-3' exonuclease activity(GO:0008409)
0.1 0.6 GO:0016780 phosphotransferase activity, for other substituted phosphate groups(GO:0016780)
0.0 0.4 GO:0016684 peroxidase activity(GO:0004601) oxidoreductase activity, acting on peroxide as acceptor(GO:0016684)
0.0 0.2 GO:0008186 RNA helicase activity(GO:0003724) ATP-dependent RNA helicase activity(GO:0004004) RNA-dependent ATPase activity(GO:0008186)