GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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rpoH | -0.82 | 8.9e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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dnaK-tpke11-dnaJ Show fit | 6.98 |
chaperone protein DnaK chaperone protein DnaJ Tpke11 |
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rrsA-ileT-alaT-rrlA-rrfA Show fit | 6.39 |
23S ribosomal RNA (rrlA) tRNAileT tRNAalaT 16S ribosomal RNA (rrsA) 5S ribosomal RNA (rrfA) |
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rrsE-gltV-rrlE-rrfE Show fit | 6.27 |
rrlE 23S ribosomal RNA tRNAgltV rrsE 16S ribosomal RNA rrfE 5S ribosomal RNA |
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rrsC-gltU-rrlC-rrfC Show fit | 6.20 |
rrlC 23S ribosomal RNA tRNAgltU rrfC 5S ribosomal RNA rrsC 16S ribosomal RNA |
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rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Show fit | 6.19 |
rrlD 23S ribosomal RNA tRNAileU tRNAalaU tRNAthrV rrfF 5S ribosomal RNA rrsD 16S ribosomal RNA rrfD 5S ribosomal RNA |
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rrsB-gltT-rrlB-rrfB Show fit | 6.14 |
rrlB 23S ribosomal RNA tRNAgltT rrfB 5S ribosomal RNA rrsB 16S ribosomal RNA |
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rrsG-gltW-rrlG-rrfG Show fit | 6.12 |
rrlG 23S ribosomal RNA tRNAgltW rrfG 5S ribosomal RNA rrsG 16S ribosomal RNA |
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rrsH-ileV-alaV-rrlH-rrfH Show fit | 5.94 |
rrlH 23S ribosomal RNA rrfH 5S ribosomal RNA rrsH 16S ribosomal RNA tRNAileV tRNAalaV |
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htpG Show fit | 3.91 |
molecular chaperone, HSP90 family |
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groSL Show fit | 3.09 |
GroES cochaperonin GroEL chaperonin |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.4 | 10.2 | GO:0006986 | response to unfolded protein(GO:0006986) |
0.2 | 4.6 | GO:0006457 | protein folding(GO:0006457) |
0.3 | 2.3 | GO:1901292 | nucleoside phosphate catabolic process(GO:1901292) |
0.4 | 1.9 | GO:1990169 | stress response to copper ion(GO:1990169) |
0.4 | 1.4 | GO:0018202 | response to nutrient(GO:0007584) peptidyl-histidine phosphorylation(GO:0018106) peptidyl-histidine modification(GO:0018202) |
0.3 | 0.9 | GO:0015976 | carbon utilization(GO:0015976) |
0.3 | 0.8 | GO:0097304 | lipoprotein biosynthetic process via signal peptide cleavage(GO:0097304) |
0.2 | 0.8 | GO:0006284 | base-excision repair(GO:0006284) |
0.1 | 0.8 | GO:0006418 | tRNA aminoacylation for protein translation(GO:0006418) tRNA aminoacylation(GO:0043039) |
0.0 | 0.7 | GO:0006096 | glycolytic process(GO:0006096) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.6 | GO:0009274 | peptidoglycan-based cell wall(GO:0009274) |
0.1 | 0.2 | GO:0042575 | DNA polymerase complex(GO:0042575) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.5 | 10.0 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.8 | 2.3 | GO:0004551 | nucleotide diphosphatase activity(GO:0004551) |
0.1 | 1.8 | GO:0000987 | bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
0.5 | 1.4 | GO:0060590 | ATPase regulator activity(GO:0060590) |
0.1 | 1.0 | GO:0004812 | aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876) |
0.3 | 0.9 | GO:0008253 | 5'-nucleotidase activity(GO:0008253) purine nucleosidase activity(GO:0008477) |
0.0 | 0.9 | GO:0051539 | 4 iron, 4 sulfur cluster binding(GO:0051539) |
0.3 | 0.8 | GO:0019104 | DNA N-glycosylase activity(GO:0019104) |
0.3 | 0.8 | GO:0042380 | hydroxymethylbutenyl pyrophosphate reductase activity(GO:0042380) |
0.2 | 0.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 1.9 | PID CMYB PATHWAY | C-MYB transcription factor network |