GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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rpoN | -0.96 | 8.9e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
zraP Show fit | 4.25 |
zinc responsive, periplasmic protein with chaperone activity |
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glnA Show fit | 2.08 |
glutamine synthetase |
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relA Show fit | 1.77 |
GDP pyrophosphokinase/GTP pyrophosphokinase |
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emrD Show fit | 1.76 |
multidrug efflux pump EmrD |
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htpG Show fit | 1.43 |
molecular chaperone, HSP90 family |
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puuP Show fit | 1.20 |
putrescine:H+ symporter PuuP |
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flhDC Show fit | 1.13 |
FlhC transcriptional dual regulator FlhD transcriptional dual regulator |
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atoDAEB Show fit | 0.98 |
acetyl-CoA acetyltransferase acetyl-CoA:acetoacetyl-CoA transferase, β subunit acetyl-CoA:acetoacetyl-CoA transferase, α subunit predicted short chain fatty acid transporter |
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acrD Show fit | 0.96 |
AcrAD-TolC multidrug efflux pump - permease subunit |
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ddpXABCDF Show fit | 0.81 |
D-Ala-D-Ala dipeptidase YddP YddO YddS YddR YddQ |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 2.6 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
0.6 | 1.8 | GO:0015969 | guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035) |
0.5 | 1.5 | GO:0015846 | polyamine transport(GO:0015846) putrescine transport(GO:0015847) |
0.1 | 1.4 | GO:0006457 | protein folding(GO:0006457) |
0.1 | 1.0 | GO:0006855 | drug transmembrane transport(GO:0006855) |
0.1 | 1.0 | GO:0006635 | fatty acid beta-oxidation(GO:0006635) |
0.1 | 0.8 | GO:0006024 | aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) peptidoglycan biosynthetic process(GO:0009252) |
0.2 | 0.7 | GO:0046210 | nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210) cellular response to nitrogen compound(GO:1901699) cellular response to reactive nitrogen species(GO:1902170) |
0.2 | 0.6 | GO:0010501 | RNA secondary structure unwinding(GO:0010501) |
0.2 | 0.5 | GO:0046100 | purine nucleobase catabolic process(GO:0006145) hypoxanthine metabolic process(GO:0046100) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 6.2 | GO:0016020 | membrane(GO:0016020) |
0.0 | 4.6 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
0.2 | 1.8 | GO:0005618 | cell wall(GO:0005618) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.4 | 4.3 | GO:0050897 | cobalt ion binding(GO:0050897) |
0.6 | 2.6 | GO:0016211 | ammonia ligase activity(GO:0016211) |
0.6 | 1.8 | GO:0008893 | GTP diphosphokinase activity(GO:0008728) guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity(GO:0008893) diphosphoric monoester hydrolase activity(GO:0016794) |
0.0 | 1.4 | GO:0042623 | ATPase activity, coupled(GO:0042623) |
0.2 | 1.2 | GO:0015101 | organic cation transmembrane transporter activity(GO:0015101) |
0.3 | 1.0 | GO:0008410 | CoA-transferase activity(GO:0008410) |
0.3 | 1.0 | GO:0015307 | drug:proton antiporter activity(GO:0015307) |
0.2 | 0.8 | GO:0008235 | metalloexopeptidase activity(GO:0008235) |
0.0 | 0.7 | GO:0016661 | oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661) |
0.2 | 0.6 | GO:0008186 | RNA helicase activity(GO:0003724) ATP-dependent RNA helicase activity(GO:0004004) RNA-dependent ATPase activity(GO:0008186) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 1.8 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 1.8 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |