Motif ID: LHX3,4.p2

Z-value: 1.279


Transcription factors associated with LHX3,4.p2:

Gene SymbolEntrez IDGene Name
LHX3 8022 LIM homeobox 3
LHX4 89884 LIM homeobox 4

Activity-expression correlation:

GenePromoterPearsonP-valuePlot
LHX3chr9_-_138236775-0.322.3e-01Click!
LHX4chr1_+_178466064-0.087.7e-01Click!


Activity profile for motif LHX3,4.p2.

activity profile for motif LHX3,4.p2


Sorted Z-values histogram for motif LHX3,4.p2

Sorted Z-values for motif LHX3,4.p2



Network of associatons between targets according to the STRING database.



First level regulatory network of LHX3,4.p2

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr19_+_60962318 1.625 NM_001145014
RFPL4A
ret finger protein-like 4A
chr3_-_69254226 1.251 NM_198271
LMOD3
leiomodin 3 (fetal)
chr5_+_6799100 1.209 NM_001171806
PAPD7
PAP associated domain containing 7
chr8_-_131483395 1.025 NM_018482
ASAP1
ArfGAP with SH3 domain, ankyrin repeat and PH domain 1
chr15_+_32048380 1.024 NM_012125
CHRM5
cholinergic receptor, muscarinic 5
chr6_+_73133152 0.980 NM_001168411
RIMS1
regulating synaptic membrane exocytosis 1
chr15_+_100175888 0.976 NM_001001674
OR4F15
olfactory receptor, family 4, subfamily F, member 15
chr8_+_124032830 0.965 ZHX2
zinc fingers and homeoboxes 2
chr12_-_7547552 0.881 NM_004244
NM_203416
CD163

CD163 molecule

chr6_+_155579788 0.867 NM_001010927
TIAM2
T-cell lymphoma invasion and metastasis 2
chr12_-_41269679 0.839 NM_153026
PRICKLE1
prickle homolog 1 (Drosophila)
chr5_-_16795336 0.796 MYO10
myosin X
chr1_-_93919789 0.790 NM_003567
BCAR3
breast cancer anti-estrogen resistance 3
chr7_+_129771865 0.783 NM_001127441
NM_001127442
NM_080385
CPA5


carboxypeptidase A5


chr1_+_156991133 0.778 NM_001005184
OR6K6
olfactory receptor, family 6, subfamily K, member 6
chr8_+_17440664 0.777 NM_001164771
NM_003046
SLC7A2

solute carrier family 7 (cationic amino acid transporter, y+ system), member 2

chrX_+_7147471 0.740 NM_000351
STS
steroid sulfatase (microsomal), isozyme S
chr1_+_242281199 0.733 ZNF238
zinc finger protein 238
chr7_+_128802719 0.728 NM_001130722
AHCYL2
adenosylhomocysteinase-like 2
chr6_-_25679197 0.728


chr2_-_99238001 0.719 NM_175735
LYG2
lysozyme G-like 2
chr9_-_111230926 0.713 NM_001145371
NM_001145372
PTPN3

protein tyrosine phosphatase, non-receptor type 3

chr1_-_150398327 0.703 NM_001122965
RPTN
repetin
chr16_-_70168449 0.700 NM_000353
TAT
tyrosine aminotransferase
chr5_-_88155360 0.678 NM_001193348
NM_001193349
MEF2C

myocyte enhancer factor 2C

chr20_-_49747397 0.656 ATP9A
ATPase, class II, type 9A
chr1_+_242281175 0.655 NM_205768
ZNF238
zinc finger protein 238
chrX_-_55074125 0.631 NM_000032
NM_001037967
NM_001037968
ALAS2


aminolevulinate, delta-, synthase 2


chr1_-_159191184 0.623 NM_080878
ITLN2
intelectin 2
chr6_-_50045296 0.619 NM_001037729
DEFB113
defensin, beta 113
chr6_+_29663661 0.619 NM_007160
OR2H2
olfactory receptor, family 2, subfamily H, member 2
chr3_+_196933422 0.615 NM_152673
MUC20
mucin 20, cell surface associated
chr7_-_27133163 0.605 NM_153631
HOXA3
homeobox A3
chr11_-_111636792 0.580 NM_001145024
C11orf34
chromosome 11 open reading frame 34
chr9_+_674193 0.578


chr4_-_170314382 0.577 SH3RF1
SH3 domain containing ring finger 1
chr10_+_685887 0.570 C10orf108
chromosome 10 open reading frame 108
chr1_+_242283129 0.568 NM_006352
ZNF238
zinc finger protein 238
chr3_+_46386636 0.567 NM_000579
NM_001100168
CCR5

chemokine (C-C motif) receptor 5

chr1_-_195818927 0.563 DENND1B
DENN/MADD domain containing 1B
chr14_+_69307914 0.561 SRSF5
serine/arginine-rich splicing factor 5
chr7_-_86433139 0.548 NM_152748
KIAA1324L
KIAA1324-like
chrX_-_110542040 0.543 NM_178151
NM_001195553
NM_178152
NM_178153
DCX



doublecortin



chr11_+_33306652 0.539 HIPK3
homeodomain interacting protein kinase 3
chr5_-_137502975 0.536 NM_003551
NME5
non-metastatic cells 5, protein expressed in (nucleoside-diphosphate kinase)
chr22_+_21817512 0.528 NM_004914
RAB36
RAB36, member RAS oncogene family
chr11_-_114593838 0.510 CADM1
cell adhesion molecule 1
chr21_-_34820916 0.502 NM_203418
RCAN1
regulator of calcineurin 1
chrX_-_43717864 0.498 NM_000266
NDP
Norrie disease (pseudoglioma)
chr2_-_224574860 0.494 SERPINE2
serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2
chr2_-_166638376 0.494 NM_001165963
NM_001165964
NM_006920
SCN1A


sodium channel, voltage-gated, type I, alpha subunit


chr10_+_21924265 0.491 MLLT10
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10
chr6_+_161043214 0.489 NM_000301
NM_001168338
PLG

plasminogen

chr8_+_22900863 0.477 NM_001160036
RHOBTB2
Rho-related BTB domain containing 2
chr9_+_27099138 0.472 NM_000459
TEK
TEK tyrosine kinase, endothelial
chr8_-_7207899 0.472 NM_001164457
ZNF705G
zinc finger protein 705G
chr3_+_46628928 0.469 NM_001195442
LOC100132146
hypothetical LOC100132146
chr1_-_203592538 0.464 NM_018203
KLHDC8A
kelch domain containing 8A
chr6_-_2580296 0.464 NM_152554
C6orf195
chromosome 6 open reading frame 195
chr2_+_178893216 0.463 NM_145739
OSBPL6
oxysterol binding protein-like 6
chr20_+_56919233 0.463 GNAS
GNAS complex locus
chr8_-_7710547 0.462 NM_001037668
NM_001040705
DEFB107A
DEFB107B
defensin, beta 107A
defensin, beta 107B
chrX_-_15242589 0.461 NM_001012428
ASB11
ankyrin repeat and SOCS box containing 11
chr17_-_36347197 0.460 NM_015515
KRT23
keratin 23 (histone deacetylase inducible)
chr10_-_48426868 0.458 NM_001042357
NM_001042389
PTPN20B
PTPN20A
protein tyrosine phosphatase, non-receptor type 20B
protein tyrosine phosphatase, non-receptor type 20A
chr3_+_152934393 0.452 NM_207365
AADACL2
arylacetamide deacetylase-like 2
chr7_-_122627235 0.450 NM_022444
SLC13A1
solute carrier family 13 (sodium/sulfate symporters), member 1
chr1_+_42773146 0.444 NM_001080850
CCDC30
coiled-coil domain containing 30
chr17_-_36877002 0.434 NM_002278
KRT32
keratin 32
chr11_+_124294355 0.428 NM_001037558
HEPN1
hepatocellular carcinoma, down-regulated 1
chr4_-_68511738 0.417 NM_001114387
NM_182606
TMPRSS11A

transmembrane protease, serine 11A

chr6_-_31196174 0.416 NM_001264
CDSN
corneodesmosin
chr7_+_147918589 0.414 NM_145304
C7orf33
chromosome 7 open reading frame 33
chr11_-_5819702 0.412 NM_001005167
OR52E6
olfactory receptor, family 52, subfamily E, member 6
chr13_+_52500830 0.409 NM_006418
OLFM4
olfactomedin 4
chr4_-_26100986 0.402 NM_000730
CCKAR
cholecystokinin A receptor
chr7_-_38279757 0.400 NM_001003799
NM_001003806
TARP

TRGV9
TCR gamma alternate reading frame protein

T cell receptor gamma variable 9
chr9_+_129066576 0.399 NM_032293
GARNL3
GTPase activating Rap/RanGAP domain-like 3
chr18_+_28023984 0.397 NM_005925
MEP1B
meprin A, beta
chr11_+_89403921 0.396 NM_001195234
TRIM49
TRIM49L2
tripartite motif containing 49
tripartite motif containing 49-like 2
chr6_+_136214495 0.394 NM_018945
PDE7B
phosphodiesterase 7B
chr5_+_36642424 0.394 SLC1A3
solute carrier family 1 (glial high affinity glutamate transporter), member 3
chr20_-_29441946 0.394 NM_153289
NM_153323
NM_173460
DEFB119


defensin, beta 119


chr5_-_111121691 0.394 NM_001142477
NM_001142476
C5orf13

chromosome 5 open reading frame 13

chr10_-_33264491 0.390 NM_033668
ITGB1
integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)
chr4_+_169789327 0.389 NM_001166109
PALLD
palladin, cytoskeletal associated protein
chr6_-_152681171 0.388 NM_015293
SYNE1
spectrin repeat containing, nuclear envelope 1
chr9_-_14076901 0.388 NFIB
nuclear factor I/B
chr5_+_36642213 0.387 NM_001166696
NM_004172
SLC1A3

solute carrier family 1 (glial high affinity glutamate transporter), member 3

chr1_-_67039518 0.387 NM_005478
INSL5
insulin-like 5
chr8_+_7340777 0.386 NM_001037668
NM_001040705
DEFB107A
DEFB107B
defensin, beta 107A
defensin, beta 107B
chr13_-_109600709 0.385 COL4A1
collagen, type IV, alpha 1
chr2_-_87102453 0.384 NM_002665
NM_001032392
PLGLB2
PLGLB1
plasminogen-like B2
plasminogen-like B1
chr16_-_71650034 0.384 NM_001164766
ZFHX3
zinc finger homeobox 3
chr5_-_160044844 0.383 ATP10B
ATPase, class V, type 10B
chr6_+_144654565 0.382 NM_007124
UTRN
utrophin
chr3_+_11269384 0.381 NM_000861
HRH1
histamine receptor H1
chr15_+_22832198 0.381 SNRPN
small nuclear ribonucleoprotein polypeptide N
chr15_-_31147376 0.380 NM_001103184
FMN1
formin 1
chr16_+_2749934 0.380


chr6_-_29635680 0.379 NM_006398
UBD
ubiquitin D
chr5_-_37220702 0.378 C5orf42
chromosome 5 open reading frame 42
chr21_-_30460841 0.376 NM_012131
CLDN17
claudin 17
chr6_-_29120930 0.375 NM_030903
OR2W1
olfactory receptor, family 2, subfamily W, member 1
chrX_+_135558001 0.373 NM_000074
CD40LG
CD40 ligand
chr5_+_127012611 0.373 NM_001048252
CTXN3
cortexin 3
chr12_+_100394787 0.370 NM_152323
SPIC
Spi-C transcription factor (Spi-1/PU.1 related)
chr10_+_63478974 0.367 ARID5B
AT rich interactive domain 5B (MRF1-like)
chr2_-_175170674 0.364 WIPF1
WAS/WASL interacting protein family, member 1
chrX_-_44945025 0.359 NM_024689
NM_176819
CXorf36

chromosome X open reading frame 36

chr1_+_166516901 0.353 NM_005149
TBX19
T-box 19
chr4_+_187227302 0.351 NM_003265
TLR3
toll-like receptor 3
chr16_-_3783475 0.350 CREBBP
CREB binding protein
chr10_+_24795446 0.347 KIAA1217
KIAA1217
chr2_+_135312655 0.347 NM_138326
ACMSD
aminocarboxymuconate semialdehyde decarboxylase
chr2_-_56266408 0.346 LOC100129434
hypothetical LOC100129434
chr3_+_153074118 0.343 NM_033050
SUCNR1
succinate receptor 1
chr1_+_200775864 0.342 NM_001197131
PPP1R12B
protein phosphatase 1, regulatory (inhibitor) subunit 12B
chr11_+_89032112 0.340 NM_153696
FOLH1B
folate hydrolase 1B
chr7_+_111908143 0.338 NM_001134468
NM_182597
C7orf53

chromosome 7 open reading frame 53

chr3_-_127810087 0.336 NM_001039783
TXNRD3IT1
thioredoxin reductase 3 intronic transcript 1
chr11_-_117628211 0.334 NM_198275
MPZL3
myelin protein zero-like 3
chr19_-_40995564 0.333 PRODH2
proline dehydrogenase (oxidase) 2
chr5_+_145296313 0.332 NM_152550
SH3RF2
SH3 domain containing ring finger 2
chr11_-_18913121 0.329 NM_147199
MRGPRX1
MAS-related GPR, member X1
chr4_-_54119102 0.329 LNX1
ligand of numb-protein X 1
chr3_-_11598829 0.325 NM_001128220
VGLL4
vestigial like 4 (Drosophila)
chrX_-_138875342 0.323 NM_001013403
CXorf66
chromosome X open reading frame 66
chr1_-_163680941 0.323 NM_006917
RXRG
retinoid X receptor, gamma
chr3_-_15538164 0.320 NM_005677
NM_080539
COLQ

collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase

chr12_+_54172413 0.320 NM_001005519
OR6C68
olfactory receptor, family 6, subfamily C, member 68
chr5_+_95092384 0.318 NM_014899
RHOBTB3
Rho-related BTB domain containing 3
chr6_+_152053323 0.317 NM_001122742
ESR1
estrogen receptor 1
chr15_+_94670160 0.316 NM_001145155
NR2F2
nuclear receptor subfamily 2, group F, member 2
chr13_+_97856148 0.315


chr6_-_66346417 0.314 NM_198283
EYS
eyes shut homolog (Drosophila)
chr4_+_166350620 0.311 NM_001161521
NM_001161522
KLHL2

kelch-like 2, Mayven (Drosophila)

chr19_-_40995606 0.310 PRODH2
proline dehydrogenase (oxidase) 2
chr19_+_21116666 0.309 NM_133473
ZNF431
zinc finger protein 431
chr12_-_52281050 0.308 NM_001130059
ATF7
activating transcription factor 7
chrX_-_18600108 0.308 NM_000330
RS1
retinoschisin 1
chr15_+_55298908 0.307 NM_207040
TCF12
transcription factor 12
chrX_-_62697473 0.306 LOC92249
hypothetical LOC92249
chr11_+_59979857 0.306 NM_021950
NM_152866
MS4A1

membrane-spanning 4-domains, subfamily A, member 1

chr11_+_61794205 0.306 NM_002411
SCGB2A2
secretoglobin, family 2A, member 2
chr17_-_36346240 0.305 KRT23
keratin 23 (histone deacetylase inducible)
chr1_-_157014048 0.304 NM_001005278
OR6N2
olfactory receptor, family 6, subfamily N, member 2
chr6_-_50097606 0.303 NM_001037497
NM_001037728
DEFB110

defensin, beta 110 locus

chr3_+_45902999 0.303 NM_006641
NM_031200
CCR9

chemokine (C-C motif) receptor 9

chr14_-_105997732 0.302 IGHA1
IGHG1
immunoglobulin heavy constant alpha 1
immunoglobulin heavy constant gamma 1 (G1m marker)
chr10_+_24795465 0.301 KIAA1217
KIAA1217
chr21_-_30510113 0.300 NM_199328
CLDN8
claudin 8
chr18_+_59767567 0.299 NM_001123366
HMSD
histocompatibility (minor) serpin domain containing
chr1_-_152845399 0.298 NM_001193495
ADAR
adenosine deaminase, RNA-specific
chr5_-_124108672 0.298 NM_020747
ZNF608
zinc finger protein 608
chr19_-_56612653 0.295 NM_001171156
NM_001171157
NM_001171158
NM_001171159
NM_001171160
NM_001171161
NM_033130
SIGLEC10






sialic acid binding Ig-like lectin 10






chr2_+_158559936 0.291 NM_001135098
UPP2
uridine phosphorylase 2
chr3_+_115099007 0.286 NM_001172105
GRAMD1C
GRAM domain containing 1C
chr7_+_137795387 0.286 NM_003852
NM_015905
TRIM24

tripartite motif containing 24

chr3_+_150675117 0.279 NM_004617
TM4SF4
transmembrane 4 L six family member 4
chr4_+_123311207 0.276 NM_015312
KIAA1109
KIAA1109
chrX_-_138552517 0.276 NM_001171877
NM_001171878
NM_001171879
NM_005369
MCF2



MCF.2 cell line derived transforming sequence



chr4_+_3341521 0.275 NM_198227
RGS12
regulator of G-protein signaling 12
chr8_+_22266256 0.272 PIWIL2
piwi-like 2 (Drosophila)
chr11_-_89181390 0.271 NM_020358
TRIM49
tripartite motif containing 49
chr5_+_179065282 0.271 CANX
calnexin
chr9_+_117955890 0.269 NM_002581
PAPPA
pregnancy-associated plasma protein A, pappalysin 1
chr15_-_64108718 0.269


chr9_-_15240113 0.268 NM_001168342
TTC39B
tetratricopeptide repeat domain 39B
chr4_-_54119159 0.265 NM_032622
LNX1
ligand of numb-protein X 1
chr1_+_119759076 0.265 NM_001166120
HSD3B2
hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 2
chrX_+_50044279 0.265 NM_033031
NM_033670
CCNB3

cyclin B3

chr11_-_47472648 0.264 NM_198700
CELF1
CUGBP, Elav-like family member 1
chr13_+_108046500 0.264 NM_015011
MYO16
myosin XVI
chr18_+_27210737 0.264 NM_001134453
NM_177986
DSG4

desmoglein 4

chr21_-_35174742 0.263 RUNX1
runt-related transcription factor 1
chr1_+_111634996 0.262 NM_021797
NM_201653
CHIA

chitinase, acidic

chr6_-_38671741 0.260 NM_001172418
NM_152733
BTBD9

BTB (POZ) domain containing 9

chr20_+_56455866 0.260 VAPB
VAMP (vesicle-associated membrane protein)-associated protein B and C
chrX_+_107174855 0.259 NM_001170553
NM_182607
VSIG1

V-set and immunoglobulin domain containing 1

chr11_-_85115105 0.258 NM_206927
NM_206928
SYTL2

synaptotagmin-like 2

chr9_-_4142182 0.256 NM_152629
GLIS3
GLIS family zinc finger 3
chr5_+_71538456 0.255 MAP1B
microtubule-associated protein 1B
chr3_+_171022403 0.255 NM_001080460
LRRIQ4
leucine-rich repeats and IQ motif containing 4
chrX_+_55666557 0.253 NM_198451
FOXR2
forkhead box R2
chr1_-_155336223 0.253 NM_001004341
ETV3L
ets variant 3-like
chr2_-_206790871 0.252 NM_001098199
NM_005279
GPR1

G protein-coupled receptor 1

chr9_+_123369219 0.251 NM_032552
DAB2IP
DAB2 interacting protein
chr2_+_216695062 0.247 XRCC5
X-ray repair complementing defective repair in Chinese hamster cells 5 (double-strand-break rejoining)
chr7_-_139408808 0.246 PARP12
poly (ADP-ribose) polymerase family, member 12
chr7_+_18296569 0.245 HDAC9
histone deacetylase 9
chrX_+_70682204 0.243 OGT
O-linked N-acetylglucosamine (GlcNAc) transferase (UDP-N-acetylglucosamine:polypeptide-N-acetylglucosaminyl transferase)
chr4_+_111616630 0.242 NM_001977
ENPEP
glutamyl aminopeptidase (aminopeptidase A)
chr12_-_10870134 0.237 NM_023921
TAS2R10
taste receptor, type 2, member 10
chrX_+_55951280 0.236


chr1_+_13903936 0.233 NM_012231
NM_015866
PRDM2

PR domain containing 2, with ZNF domain

chr6_-_24985432 0.233 NM_015864
FAM65B
family with sequence similarity 65, member B
chr8_-_62764839 0.232 NM_001164750
NM_001164751
NM_001164752
NM_001164753
NM_020164
NM_032467
NM_032468
ASPH






aspartate beta-hydroxylase






chr16_+_3473476 0.232 NAT15
N-acetyltransferase 15 (GCN5-related, putative)
chr19_+_9157269 0.232 NM_175883
OR7D2
olfactory receptor, family 7, subfamily D, member 2

Gene Ontology Analysis

Gene overrepresentation in process category:

enrichment   p-value GO term description
2.36 6.57e-05 GO:0007608 sensory perception of smell
2.16 7.40e-04 GO:0007606 sensory perception of chemical stimulus
1.74 1.24e-02 GO:0007600 sensory perception

Gene overrepresentation in compartment category:

enrichment   p-value GO term description
1.51 3.62e-05 GO:0005576 extracellular region
1.26 3.72e-03 GO:0005886 plasma membrane
2.71 3.73e-03 GO:0005882 intermediate filament
1.26 5.41e-03 GO:0071944 cell periphery
2.34 3.73e-02 GO:0045111 intermediate filament cytoskeleton

Gene overrepresentation in function category:

enrichment   p-value GO term description
2.12 1.17e-08 GO:0004930 G-protein coupled receptor activity
2.48 3.67e-06 GO:0004984 olfactory receptor activity
1.60 1.54e-05 GO:0004872 receptor activity
1.63 2.95e-04 GO:0004888 transmembrane receptor activity
1.46 5.52e-04 GO:0004871 signal transducer activity
1.46 5.52e-04 GO:0060089 molecular transducer activity
6.29 1.00e-02 GO:0001608 nucleotide receptor activity, G-protein coupled
6.29 1.00e-02 GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
13.11 4.31e-02 GO:0004969 histamine receptor activity