Motif ID: Msx3

Z-value: 0.524


Transcription factors associated with Msx3:

Gene SymbolEntrez IDGene Name
Msx3 ENSMUSG00000025469.9 Msx3

Activity-expression correlation:

Gene SymbolPromoterPearson corr. coef.P-valuePlot
Msx3mm10_v2_chr7_-_140049083_140049089-0.762.9e-04Click!


Activity profile for motif Msx3.

activity profile for motif Msx3


Sorted Z-values histogram for motif Msx3

Sorted Z-values for motif Msx3



Network of associatons between targets according to the STRING database.



First level regulatory network of Msx3

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr9_-_53975246 1.931 ENSMUST00000048409.7
 Elmod1
ELMO/CED-12 domain containing 1
chr1_-_158356258 1.202 ENSMUST00000004133.8
 Brinp2
bone morphogenic protein/retinoic acid inducible neural-specific 2
chr10_+_81257277 1.139 ENSMUST00000117488.1
ENSMUST00000105328.3
ENSMUST00000121205.1
 Matk


megakaryocyte-associated tyrosine kinase


chr10_+_39612934 1.122 ENSMUST00000019987.6
 Traf3ip2
TRAF3 interacting protein 2
chr4_-_14621805 1.062 ENSMUST00000042221.7
 Slc26a7
solute carrier family 26, member 7
chr2_-_45117349 0.869 ENSMUST00000176438.2
 Zeb2
zinc finger E-box binding homeobox 2
chr17_+_21383725 0.849 ENSMUST00000056107.4
ENSMUST00000162659.1
 Zfp677

zinc finger protein 677

chrX_-_143933089 0.810 ENSMUST00000087313.3
 Dcx
doublecortin
chr13_+_83732438 0.801 ENSMUST00000182701.1
 C130071C03Rik
RIKEN cDNA C130071C03 gene
chr7_+_103550368 0.782 ENSMUST00000106888.1
 Olfr613
olfactory receptor 613
chr5_+_14514918 0.770 ENSMUST00000030691.10
ENSMUST00000182407.1
 Pclo

piccolo (presynaptic cytomatrix protein)

chrX_-_143933204 0.756 ENSMUST00000112851.1
ENSMUST00000112856.2
ENSMUST00000033642.3
 Dcx


doublecortin


chr2_-_33087169 0.734 ENSMUST00000102810.3
 Garnl3
GTPase activating RANGAP domain-like 3
chr9_-_15301555 0.732 ENSMUST00000034414.8
 4931406C07Rik
RIKEN cDNA 4931406C07 gene
chr5_-_62766153 0.717 ENSMUST00000076623.4
 Arap2
ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr15_+_82252397 0.691 ENSMUST00000136948.1
 1500009C09Rik
RIKEN cDNA 1500009C09 gene
chr4_+_102254739 0.673 ENSMUST00000106907.2
 Pde4b
phosphodiesterase 4B, cAMP specific
chr1_-_52190901 0.593 ENSMUST00000156887.1
ENSMUST00000129107.1
 Gls

glutaminase

chr1_+_104768510 0.583 ENSMUST00000062528.8
 Cdh20
cadherin 20
chr2_-_33086366 0.555 ENSMUST00000049618.2
 Garnl3
GTPase activating RANGAP domain-like 3
chr16_+_11406618 0.523 ENSMUST00000122168.1
 Snx29
sorting nexin 29
chr2_-_20943413 0.487 ENSMUST00000140230.1
 Arhgap21
Rho GTPase activating protein 21
chr18_+_37819543 0.451 ENSMUST00000055935.5
 Pcdhga9
protocadherin gamma subfamily A, 9
chr10_+_88379217 0.430 ENSMUST00000130301.1
ENSMUST00000020251.8
 Gnptab

N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits

chrX_+_16619698 0.425 ENSMUST00000026013.5
 Maoa
monoamine oxidase A
chr3_+_66985680 0.423 ENSMUST00000065047.6
 Rsrc1
arginine/serine-rich coiled-coil 1
chr11_+_70018421 0.413 ENSMUST00000108588.1
 Dlg4
discs, large homolog 4 (Drosophila)
chr7_-_127895578 0.399 ENSMUST00000033074.6
 Vkorc1
vitamin K epoxide reductase complex, subunit 1
chr11_+_53433299 0.392 ENSMUST00000018382.6
 Gdf9
growth differentiation factor 9
chr18_+_57468478 0.377 ENSMUST00000091892.2
 Ctxn3
cortexin 3
chr4_-_14621494 0.350 ENSMUST00000149633.1
 Slc26a7
solute carrier family 26, member 7
chr15_+_44787746 0.328 ENSMUST00000181839.1
 2310069G16Rik
RIKEN cDNA 2310069G16 gene
chr10_+_88379127 0.319 ENSMUST00000127615.1
 Gnptab
N-acetylglucosamine-1-phosphate transferase, alpha and beta subunits
chr3_-_41742471 0.312 ENSMUST00000026866.8
 Sclt1
sodium channel and clathrin linker 1
chr17_-_24527925 0.297 ENSMUST00000176652.1
 Traf7
TNF receptor-associated factor 7
chrX_+_107255878 0.291 ENSMUST00000101294.2
ENSMUST00000118820.1
ENSMUST00000120971.1
 Gpr174


G protein-coupled receptor 174


chr17_-_24527830 0.286 ENSMUST00000176353.1
ENSMUST00000176237.1
 Traf7

TNF receptor-associated factor 7

chr12_+_102128718 0.262 ENSMUST00000159329.1
 Slc24a4
solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr2_+_121956411 0.254 ENSMUST00000110578.1
 Ctdspl2
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chrX_+_101449078 0.249 ENSMUST00000033674.5
 Itgb1bp2
integrin beta 1 binding protein 2
chr16_-_75766758 0.249 ENSMUST00000114244.1
ENSMUST00000046283.8
 Hspa13

heat shock protein 70 family, member 13

chr5_+_88583527 0.237 ENSMUST00000031229.6
 Rufy3
RUN and FYVE domain containing 3
chr3_+_94837702 0.221 ENSMUST00000107266.1
ENSMUST00000042402.5
ENSMUST00000107269.1
 Pogz


pogo transposable element with ZNF domain


chr3_+_94837533 0.221 ENSMUST00000107270.2
 Pogz
pogo transposable element with ZNF domain
chr8_+_72219726 0.216 ENSMUST00000003123.8
 Fam32a
family with sequence similarity 32, member A
chr2_+_121956651 0.207 ENSMUST00000110574.1
 Ctdspl2
CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr6_+_8948608 0.189 ENSMUST00000160300.1
 Nxph1
neurexophilin 1
chr7_+_3645267 0.183 ENSMUST00000038913.9
 Cnot3
CCR4-NOT transcription complex, subunit 3
chr6_+_145934113 0.177 ENSMUST00000032383.7
 Sspn
sarcospan
chr8_+_107031218 0.175 ENSMUST00000034388.9
 Vps4a
vacuolar protein sorting 4a (yeast)
chr3_+_66985947 0.169 ENSMUST00000161726.1
ENSMUST00000160504.1
 Rsrc1

arginine/serine-rich coiled-coil 1

chr2_+_125136692 0.156 ENSMUST00000099452.2
 Ctxn2
cortexin 2
chr9_+_44398176 0.150 ENSMUST00000165839.1
 Slc37a4
solute carrier family 37 (glucose-6-phosphate transporter), member 4
chrX_-_75578188 0.150 ENSMUST00000033545.5
 Rab39b
RAB39B, member RAS oncogene family
chr10_-_85127977 0.143 ENSMUST00000050813.2
 Mterfd3
MTERF domain containing 3
chr3_+_41742615 0.130 ENSMUST00000146165.1
ENSMUST00000119572.1
ENSMUST00000108065.2
ENSMUST00000120167.1
ENSMUST00000026867.7
ENSMUST00000026868.7
 D3Ertd751e





DNA segment, Chr 3, ERATO Doi 751, expressed





chr12_+_72441852 0.124 ENSMUST00000162159.1
 Lrrc9
leucine rich repeat containing 9
chr4_-_129378116 0.117 ENSMUST00000030610.2
 Zbtb8a
zinc finger and BTB domain containing 8a
chr12_+_71136848 0.102 ENSMUST00000149564.1
ENSMUST00000045907.8
 2700049A03Rik

RIKEN cDNA 2700049A03 gene

chr11_+_116843278 0.097 ENSMUST00000106370.3
 Mettl23
methyltransferase like 23
chr8_+_69659263 0.095 ENSMUST00000169125.1
 Zfp964
zinc finger protein 964
chr3_+_138374121 0.071 ENSMUST00000171054.1
 Adh6-ps1
alcohol dehydrogenase 6 (class V), pseudogene 1
chrM_+_9870 0.066 ENSMUST00000084013.1
 mt-Nd4l
mitochondrially encoded NADH dehydrogenase 4L
chr3_+_66985647 0.061 ENSMUST00000162362.1
ENSMUST00000065074.7
 Rsrc1

arginine/serine-rich coiled-coil 1

chr12_+_72441933 0.057 ENSMUST00000161284.1
 Lrrc9
leucine rich repeat containing 9
chr16_+_49699198 0.040 ENSMUST00000046777.4
ENSMUST00000142682.1
 Ift57

intraflagellar transport 57

chr4_-_14621669 0.021 ENSMUST00000143105.1
 Slc26a7
solute carrier family 26, member 7
chr7_-_99141068 0.019 ENSMUST00000037968.8
 Uvrag
UV radiation resistance associated gene
chr10_-_76110956 0.017 ENSMUST00000120757.1
 Slc5a4b
solute carrier family 5 (neutral amino acid transporters, system A), member 4b

Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 0.8 GO:0098928 presynaptic signal transduction(GO:0098928) presynapse to nucleus signaling pathway(GO:0099526)
0.2 0.7 GO:0016256 N-glycan processing to lysosome(GO:0016256)
0.2 1.4 GO:0019532 oxalate transport(GO:0019532)
0.1 0.9 GO:1903056 positive regulation of lens fiber cell differentiation(GO:1902748) regulation of melanosome organization(GO:1903056)
0.1 0.4 GO:0018214 peptidyl-glutamic acid carboxylation(GO:0017187) protein carboxylation(GO:0018214)
0.1 0.6 GO:0006543 glutamine catabolic process(GO:0006543)
0.1 0.4 GO:0042420 dopamine catabolic process(GO:0042420)
0.1 1.6 GO:0048672 positive regulation of collateral sprouting(GO:0048672)
0.1 0.5 GO:0051684 maintenance of Golgi location(GO:0051684)
0.1 0.2 GO:0009838 abscission(GO:0009838)
0.1 0.4 GO:0042701 progesterone secretion(GO:0042701)
0.1 1.1 GO:0002230 positive regulation of defense response to virus by host(GO:0002230)
0.1 0.3 GO:0045162 clustering of voltage-gated sodium channels(GO:0045162)
0.1 0.7 GO:1901898 negative regulation of relaxation of cardiac muscle(GO:1901898)
0.1 0.2 GO:0015712 hexose phosphate transport(GO:0015712) glucose-6-phosphate transport(GO:0015760)
0.0 0.6 GO:0000185 activation of MAPKKK activity(GO:0000185)
0.0 0.4 GO:0099628 receptor diffusion trapping(GO:0098953) postsynaptic neurotransmitter receptor diffusion trapping(GO:0098970) neurotransmitter receptor diffusion trapping(GO:0099628)
0.0 1.0 GO:0007608 sensory perception of smell(GO:0007608)
0.0 0.4 GO:0051382 kinetochore assembly(GO:0051382)
0.0 1.2 GO:0071300 cellular response to retinoic acid(GO:0071300)
0.0 1.9 GO:1903955 positive regulation of protein targeting to mitochondrion(GO:1903955)
0.0 1.1 GO:0038083 peptidyl-tyrosine autophosphorylation(GO:0038083)
0.0 0.6 GO:0046677 response to antibiotic(GO:0046677)
0.0 0.5 GO:0046827 positive regulation of protein export from nucleus(GO:0046827)
0.0 0.2 GO:2000114 regulation of establishment of cell polarity(GO:2000114)

Gene overrepresentation in cellular_component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.8 GO:0099569 presynaptic cytoskeleton(GO:0099569)
0.0 0.3 GO:0071439 clathrin complex(GO:0071439)
0.0 0.7 GO:0000930 gamma-tubulin complex(GO:0000930)
0.0 0.2 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.0 0.4 GO:0044224 juxtaparanode region of axon(GO:0044224)
0.0 0.2 GO:0071437 invadopodium(GO:0071437)
0.0 0.2 GO:0090543 ESCRT III complex(GO:0000815) Flemming body(GO:0090543)
0.0 0.2 GO:0016010 dystrophin-associated glycoprotein complex(GO:0016010) glycoprotein complex(GO:0090665)

Gene overrepresentation in molecular_function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0003976 UDP-N-acetylglucosamine-lysosomal-enzyme N-acetylglucosaminephosphotransferase activity(GO:0003976)
0.1 0.8 GO:0004984 olfactory receptor activity(GO:0004984)
0.1 1.4 GO:0019531 secondary active sulfate transmembrane transporter activity(GO:0008271) oxalate transmembrane transporter activity(GO:0019531)
0.1 0.6 GO:0004359 glutaminase activity(GO:0004359)
0.1 0.4 GO:0051378 primary amine oxidase activity(GO:0008131) serotonin binding(GO:0051378)
0.1 0.8 GO:0005522 profilin binding(GO:0005522)
0.1 0.3 GO:0008273 calcium, potassium:sodium antiporter activity(GO:0008273)
0.1 0.4 GO:0031811 G-protein coupled nucleotide receptor binding(GO:0031811) P2Y1 nucleotide receptor binding(GO:0031812)
0.0 0.4 GO:0048038 quinone binding(GO:0048038)
0.0 1.1 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.0 0.9 GO:0070412 R-SMAD binding(GO:0070412)
0.0 0.7 GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity(GO:0004115)
0.0 0.3 GO:0045125 bioactive lipid receptor activity(GO:0045125)
0.0 0.2 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.7 GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding(GO:0005547)
0.0 3.7 GO:0005096 GTPase activator activity(GO:0005096)

Gene overrepresentation in C2:CP category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.6 PID_LIS1_PATHWAY Lissencephaly gene (LIS1) in neuronal migration and development
0.0 0.7 PID_ARF6_PATHWAY Arf6 signaling events
0.0 0.4 ST_GA12_PATHWAY G alpha 12 Pathway
0.0 1.1 PID_KIT_PATHWAY Signaling events mediated by Stem cell factor receptor (c-Kit)

Gene overrepresentation in C2:CP:REACTOME category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.6 REACTOME_GLUTAMATE_NEUROTRANSMITTER_RELEASE_CYCLE Genes involved in Glutamate Neurotransmitter Release Cycle
0.0 0.4 REACTOME_GAMMA_CARBOXYLATION_TRANSPORT_AND_AMINO_TERMINAL_CLEAVAGE_OF_PROTEINS Genes involved in Gamma-carboxylation, transport, and amino-terminal cleavage of proteins
0.0 0.4 REACTOME_NOREPINEPHRINE_NEUROTRANSMITTER_RELEASE_CYCLE Genes involved in Norepinephrine Neurotransmitter Release Cycle
0.0 1.7 REACTOME_TRANSPORT_OF_INORGANIC_CATIONS_ANIONS_AND_AMINO_ACIDS_OLIGOPEPTIDES Genes involved in Transport of inorganic cations/anions and amino acids/oligopeptides
0.0 0.7 REACTOME_DARPP_32_EVENTS Genes involved in DARPP-32 events
0.0 1.6 REACTOME_L1CAM_INTERACTIONS Genes involved in L1CAM interactions