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GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)
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Results for CACCUCC
Z-value: 0.47
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miRNA associated with seed CACCUCC
| Name | miRBASE accession |
|---|---|
|
hsa-miR-1306-5p
|
MIMAT0022726 |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| chr5_+_175792459 Show fit | 0.50 |
ENST00000310389.5
|
ADP-ribosylation factor-like 10 |
|
| chr9_-_101471479 Show fit | 0.48 |
ENST00000259455.2
|
gamma-aminobutyric acid (GABA) B receptor, 2 |
|
| chr1_+_46972668 Show fit | 0.45 |
ENST00000371956.4
ENST00000360032.3 |
diencephalon/mesencephalon homeobox 1 |
|
| chr22_+_40390930 Show fit | 0.41 |
ENST00000333407.6
|
family with sequence similarity 83, member F |
|
| chr8_+_11141925 Show fit | 0.39 |
ENST00000221086.3
|
myotubularin related protein 9 |
|
| chr11_-_45687128 Show fit | 0.36 |
ENST00000308064.2
|
carbohydrate (keratan sulfate Gal-6) sulfotransferase 1 |
|
| chr7_+_30951461 Show fit | 0.30 |
ENST00000311813.4
|
aquaporin 1 (Colton blood group) |
|
| chr1_+_19638788 Show fit | 0.29 |
ENST00000375155.3
ENST00000375153.3 ENST00000400548.2 |
PQ loop repeat containing 2 |
|
| chr9_-_130829588 Show fit | 0.27 |
ENST00000373078.4
|
nuclear apoptosis inducing factor 1 |
|
| chr11_-_64570706 Show fit | 0.23 |
ENST00000294066.2
ENST00000377350.3 |
mitogen-activated protein kinase kinase kinase kinase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of CACCUCC
Gene Ontology Analysis
Gene overrepresentation in biological_process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | GO:0008343 | adult feeding behavior(GO:0008343) |
| 0.0 | 0.5 | GO:0007214 | gamma-aminobutyric acid signaling pathway(GO:0007214) |
| 0.0 | 0.4 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 0.3 | GO:0072019 | carbon dioxide transmembrane transport(GO:0035378) proximal convoluted tubule development(GO:0072019) metanephric proximal convoluted tubule development(GO:0072229) |
| 0.1 | 0.3 | GO:1903401 | L-lysine transmembrane transport(GO:1903401) |
| 0.0 | 0.2 | GO:0035414 | negative regulation of catenin import into nucleus(GO:0035414) |
| 0.0 | 0.1 | GO:0046104 | thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125) |
| 0.0 | 0.1 | GO:0023016 | signal transduction by trans-phosphorylation(GO:0023016) negative regulation of rubidium ion transport(GO:2000681) negative regulation of rubidium ion transmembrane transporter activity(GO:2000687) |
| 0.0 | 0.1 | GO:0090116 | C-5 methylation of cytosine(GO:0090116) |
| 0.0 | 0.1 | GO:0060011 | Sertoli cell proliferation(GO:0060011) |
Gene overrepresentation in cellular_component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | GO:0038039 | G-protein coupled receptor heterodimeric complex(GO:0038039) |
| 0.1 | 0.3 | GO:0020005 | symbiont-containing vacuole(GO:0020003) symbiont-containing vacuole membrane(GO:0020005) |
| 0.0 | 0.2 | GO:0016342 | catenin complex(GO:0016342) |
Gene overrepresentation in molecular_function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | GO:0004965 | G-protein coupled GABA receptor activity(GO:0004965) |
| 0.1 | 0.4 | GO:0001517 | N-acetylglucosamine 6-O-sulfotransferase activity(GO:0001517) |
| 0.0 | 0.4 | GO:0052629 | phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity(GO:0052629) |
| 0.1 | 0.3 | GO:0035379 | carbon dioxide transmembrane transporter activity(GO:0035379) |
| 0.1 | 0.3 | GO:0015189 | L-lysine transmembrane transporter activity(GO:0015189) |
| 0.0 | 0.2 | GO:0008349 | MAP kinase kinase kinase kinase activity(GO:0008349) |
| 0.0 | 0.1 | GO:0004137 | deoxycytidine kinase activity(GO:0004137) thymidine kinase activity(GO:0004797) |
| 0.0 | 0.1 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
| 0.0 | 0.1 | GO:0005222 | intracellular cAMP activated cation channel activity(GO:0005222) |
Gene overrepresentation in C2:CP:REACTOME category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | REACTOME CLASS C 3 METABOTROPIC GLUTAMATE PHEROMONE RECEPTORS | Genes involved in Class C/3 (Metabotropic glutamate/pheromone receptors) |
| 0.0 | 0.4 | REACTOME KERATAN SULFATE BIOSYNTHESIS | Genes involved in Keratan sulfate biosynthesis |
| 0.0 | 0.3 | REACTOME PASSIVE TRANSPORT BY AQUAPORINS | Genes involved in Passive Transport by Aquaporins |