ISMARA results: GGACGGA

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GNF SymAtlas + NCI-60 cancer cell lines, comparison of cancers vs non-cancers, human (Su, 2004; Ross, 2000)

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Results for GGACGGA

Z-value: 0.52

Motif logo

miRNA associated with seed GGACGGA

Name	miRBASE accession
hsa-miR-184 miRBase	MIMAT0000454

Activity profile of GGACGGA motif

Sorted Z-values of GGACGGA motif

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Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_19229248 Show fit	1.31	ENST00000375341.3	ALDH4A1 Ensembl NCBI GeneCards UniProt NextProt Show fit	aldehyde dehydrogenase 4 family, member A1
chr11_+_117049445 Show fit	0.88	ENST00000324225.4 ENST00000532960.1	SIDT2 Ensembl NCBI GeneCards UniProt NextProt Show fit	SID1 transmembrane family, member 2
chr1_-_57045228 Show fit	0.84	ENST00000371250.3	PPAP2B Ensembl NCBI GeneCards UniProt NextProt Show fit	phosphatidic acid phosphatase type 2B
chr19_+_18794470 Show fit	0.41	ENST00000321949.8 ENST00000338797.6	CRTC1 Ensembl NCBI GeneCards UniProt NextProt Show fit	CREB regulated transcription coactivator 1
chr2_+_120770645 Show fit	0.30	ENST00000443902.2	EPB41L5 Ensembl NCBI GeneCards UniProt NextProt Show fit	erythrocyte membrane protein band 4.1 like 5
chr10_+_102295616 Show fit	0.15	ENST00000299163.6	HIF1AN Ensembl NCBI GeneCards UniProt NextProt Show fit	hypoxia inducible factor 1, alpha subunit inhibitor
chr4_-_174451370 Show fit	0.13	ENST00000359562.4	HAND2 Ensembl NCBI GeneCards UniProt NextProt Show fit	heart and neural crest derivatives expressed 2
chr19_+_3359561 Show fit	0.09	ENST00000589123.1 ENST00000346156.5 ENST00000395111.3 ENST00000586919.1	NFIC Ensembl NCBI GeneCards UniProt NextProt Show fit	nuclear factor I/C (CCAAT-binding transcription factor)
chr22_-_39268308 Show fit	0.05	ENST00000407418.3	CBX6 Ensembl NCBI GeneCards UniProt NextProt Show fit	chromobox homolog 6

Showing 1 to 9 of 9 entries

Network of associatons between targets according to the STRING database.

First level regulatory network of GGACGGA

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.3	GO:0019470	4-hydroxyproline catabolic process(GO:0019470)
0.1	0.9	GO:0033227	dsRNA transport(GO:0033227)
0.1	0.4	GO:1902630	regulation of membrane hyperpolarization(GO:1902630)
0.1	0.3	GO:0003383	apical constriction(GO:0003383) mesoderm migration involved in gastrulation(GO:0007509)
0.0	0.1	GO:0042264	peptidyl-aspartic acid hydroxylation(GO:0042264)
0.0	0.1	GO:0061032	cardiac right ventricle formation(GO:0003219) visceral serous pericardium development(GO:0061032)

Showing 1 to 6 of 6 entries

Gene overrepresentation in molecular_function category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.3	GO:0004029	aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.1	0.9	GO:0051033	nucleic acid transmembrane transporter activity(GO:0051032) RNA transmembrane transporter activity(GO:0051033)
0.0	0.4	GO:0008140	cAMP response element binding protein binding(GO:0008140)
0.0	0.1	GO:0071532	ankyrin repeat binding(GO:0071532)

Showing 1 to 4 of 4 entries

Gene overrepresentation in C2:CP:REACTOME category:

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Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.8	REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS	Genes involved in Sphingolipid de novo biosynthesis

Showing 1 to 1 of 1 entries

Results for GGACGGA

Z-value: 0.52

Motif logo

miRNA associated with seed GGACGGA

Activity profile of GGACGGA motif

Sorted Z-values of GGACGGA motif

Top targets:

Network of associatons between targets according to the STRING database.

First level regulatory network of GGACGGA

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Gene Ontology Analysis

Gene overrepresentation in biological_process category:

Gene overrepresentation in molecular_function category:

Gene overrepresentation in C2:CP:REACTOME category: