Motif ID: LHX3,4.p2

Z-value: 0.639


Transcription factors associated with LHX3,4.p2:

Gene SymbolEntrez IDGene Name
LHX3 8022 LIM homeobox 3
LHX4 89884 LIM homeobox 4



Activity profile for motif LHX3,4.p2.

activity profile for motif LHX3,4.p2


Sorted Z-values histogram for motif LHX3,4.p2

Sorted Z-values for motif LHX3,4.p2



Network of associatons between targets according to the STRING database.



First level regulatory network of LHX3,4.p2

PNG image of the network

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Top targets:


Promoter Score Refseq Gene Symbol Gene Name
chr5_-_88155360 0.876 NM_001193348
NM_001193349
MEF2C

myocyte enhancer factor 2C

chr2_-_175170674 0.813 WIPF1
WAS/WASL interacting protein family, member 1
chr3_-_55489973 0.754 WNT5A
wingless-type MMTV integration site family, member 5A
chr1_+_154120170 0.691 SYT11
synaptotagmin XI
chr8_-_122722674 0.605 NM_005328
HAS2
hyaluronan synthase 2
chr13_+_23042722 0.596 NM_148957
TNFRSF19
tumor necrosis factor receptor superfamily, member 19
chr14_-_60185659 0.581 NM_005982
SIX1
SIX homeobox 1
chr3_+_150675117 0.534 NM_004617
TM4SF4
transmembrane 4 L six family member 4
chr19_-_56612653 0.530 NM_001171156
NM_001171157
NM_001171158
NM_001171159
NM_001171160
NM_001171161
NM_033130
SIGLEC10






sialic acid binding Ig-like lectin 10






chr5_+_95092384 0.525 NM_014899
RHOBTB3
Rho-related BTB domain containing 3
chr13_+_34948977 0.524 NBEA
neurobeachin
chr10_+_685887 0.512 C10orf108
chromosome 10 open reading frame 108
chr13_-_34948758 0.490 NM_005584
MAB21L1
mab-21-like 1 (C. elegans)
chr8_-_72436519 0.485 EYA1
eyes absent homolog 1 (Drosophila)
chr13_+_34948885 0.447 NBEA
neurobeachin
chr4_+_71806538 0.437 NM_001037442
NM_014961
RUFY3

RUN and FYVE domain containing 3

chr16_+_11966464 0.419 NM_001192
TNFRSF17
tumor necrosis factor receptor superfamily, member 17
chr3_-_158703821 0.409 NM_001167911
NM_001167912
VEPH1

ventricular zone expressed PH domain homolog 1 (zebrafish)

chr1_+_196874839 0.402 PTPRC
protein tyrosine phosphatase, receptor type, C
chr4_+_169654742 0.401 NM_001166108
NM_016081
PALLD

palladin, cytoskeletal associated protein

chr3_-_158704056 0.395 NM_001167915
NM_001167916
VEPH1

ventricular zone expressed PH domain homolog 1 (zebrafish)

chr17_+_19917420 0.388 SPECC1
sperm antigen with calponin homology and coiled-coil domains 1
chr7_-_92615593 0.381 NM_152703
SAMD9L
sterile alpha motif domain containing 9-like
chr2_+_170074457 0.374 NM_006063
KBTBD10
kelch repeat and BTB (POZ) domain containing 10
chr12_-_101396459 0.373 NM_001111284
IGF1
insulin-like growth factor 1 (somatomedin C)
chr1_-_229071957 0.354 NM_001136494
C1orf198
chromosome 1 open reading frame 198
chr3_-_168674502 0.349 NM_006217
SERPINI2
serpin peptidase inhibitor, clade I (pancpin), member 2
chr7_+_129771865 0.341 NM_001127441
NM_001127442
NM_080385
CPA5


carboxypeptidase A5


chr16_+_7322751 0.341 NM_145891
NM_145892
NM_145893
RBFOX1


RNA binding protein, fox-1 homolog (C. elegans) 1


chr11_+_22646229 0.338 NM_177553
GAS2
growth arrest-specific 2
chr6_+_12825818 0.337 NM_030948
PHACTR1
phosphatase and actin regulator 1
chr15_+_55298908 0.335 NM_207040
TCF12
transcription factor 12
chr11_+_89032112 0.334 NM_153696
FOLH1B
folate hydrolase 1B
chr13_-_59223074 0.329


chr3_-_127810087 0.323 NM_001039783
TXNRD3IT1
thioredoxin reductase 3 intronic transcript 1
chr10_+_35466715 0.314 NM_183011
NM_183012
CREM

cAMP responsive element modulator

chr3_+_46894239 0.313 NM_000316
PTH1R
parathyroid hormone 1 receptor
chr16_-_71650034 0.310 NM_001164766
ZFHX3
zinc finger homeobox 3
chr22_+_38627031 0.304 NM_004810
GRAP2
GRB2-related adaptor protein 2
chr6_+_158653679 0.303 NM_001007466
NM_020245
TULP4

tubby like protein 4

chr8_-_7200278 0.302 FAM66B
family with sequence similarity 66, member B
chr19_+_14554895 0.294 NM_207390
CLEC17A
C-type lectin domain family 17, member A
chr12_-_51887266 0.293 NM_000889
ITGB7
integrin, beta 7
chr22_+_38627129 0.292 GRAP2
GRB2-related adaptor protein 2
chr12_-_16652202 0.291 NM_001001395
LMO3
LIM domain only 3 (rhombotin-like 2)
chr1_+_117345894 0.288 NM_004258
CD101
CD101 molecule
chr17_+_18027816 0.285 ALKBH5
alkB, alkylation repair homolog 5 (E. coli)
chr4_+_74497998 0.280 ALB
albumin
chr17_-_9635325 0.278 NM_001105571
DHRS7C
dehydrogenase/reductase (SDR family) member 7C
chr12_+_79625538 0.276 NM_002469
MYF6
myogenic factor 6 (herculin)
chr17_-_38087366 0.275 NM_016602
CCR10
chemokine (C-C motif) receptor 10
chr7_+_90177082 0.274 CDK14
cyclin-dependent kinase 14
chr10_+_91488704 0.273 KIF20B
kinesin family member 20B
chr11_+_59979857 0.273 NM_021950
NM_152866
MS4A1

membrane-spanning 4-domains, subfamily A, member 1

chr6_-_144427340 0.268 NM_001080951
NM_001080955
PLAGL1

pleiomorphic adenoma gene-like 1

chr3_+_99733432 0.266 NM_005290
GPR15
G protein-coupled receptor 15
chr4_-_116254381 0.266 NM_022569
NDST4
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 4
chr2_-_227371698 0.264 NM_005544
IRS1
insulin receptor substrate 1
chr4_-_176970895 0.264 GPM6A
glycoprotein M6A
chr7_-_122627235 0.263 NM_022444
SLC13A1
solute carrier family 13 (sodium/sulfate symporters), member 1
chr2_-_158008763 0.258 NM_004288
CYTIP
cytohesin 1 interacting protein
chr8_-_72431274 0.257 NM_172058
NM_172059
NM_172060
EYA1


eyes absent homolog 1 (Drosophila)


chr5_+_6799100 0.257 NM_001171806
PAPD7
PAP associated domain containing 7
chr12_-_16321885 0.255 NM_001170798
SLC15A5
solute carrier family 15, member 5
chr7_+_37689903 0.254


chr7_+_90176647 0.248 NM_012395
CDK14
cyclin-dependent kinase 14
chr3_+_39399770 0.248 NM_017875
SLC25A38
solute carrier family 25, member 38
chr9_+_117955890 0.247 NM_002581
PAPPA
pregnancy-associated plasma protein A, pappalysin 1
chr18_-_13905534 0.243 NM_000529
MC2R
melanocortin 2 receptor (adrenocorticotropic hormone)
chrX_+_107174855 0.242 NM_001170553
NM_182607
VSIG1

V-set and immunoglobulin domain containing 1

chr7_-_25234582 0.241 NM_022150
NPVF
neuropeptide VF precursor
chr17_-_36456949 0.241 NM_001123387
KRTAP2-1
keratin associated protein 2-1
chr6_-_56824371 0.240 DST
dystonin
chr12_-_51887318 0.240 ITGB7
integrin, beta 7
chr6_-_133076873 0.240 NM_004666
VNN1
vanin 1
chr4_+_74498042 0.239 ALB
albumin
chr4_-_176970372 0.235 GPM6A
glycoprotein M6A
chr13_+_48923688 0.234 NM_001160308
SETDB2
SET domain, bifurcated 2
chr5_+_156628929 0.233 NM_014376
CYFIP2
cytoplasmic FMR1 interacting protein 2
chr12_+_91620749 0.230 NM_001037671
NM_001178097
C12orf74

chromosome 12 open reading frame 74

chrX_+_55951280 0.230


chr18_+_59767567 0.224 NM_001123366
HMSD
histocompatibility (minor) serpin domain containing
chr6_-_50045296 0.224 NM_001037729
DEFB113
defensin, beta 113
chr13_-_83354425 0.222 SLITRK1
SLIT and NTRK-like family, member 1
chr2_-_216654708 0.220 NM_018441
PECR
peroxisomal trans-2-enoyl-CoA reductase
chr20_-_29441946 0.217 NM_153289
NM_153323
NM_173460
DEFB119


defensin, beta 119


chr15_-_31147376 0.216 NM_001103184
FMN1
formin 1
chr8_-_42742729 0.216 NM_004198
CHRNA6
cholinergic receptor, nicotinic, alpha 6
chr4_+_71054492 0.215 NM_214711
C4orf40
chromosome 4 open reading frame 40
chr2_+_28892366 0.214 NM_001008779
SPDYA
speedy homolog A (Xenopus laevis)
chr15_-_70838703 0.213


chr12_+_8224056 0.211 FAM66C
family with sequence similarity 66, member C
chr1_+_246682699 0.210 NM_001004136
OR2T2
olfactory receptor, family 2, subfamily T, member 2
chr2_-_200033445 0.210 SATB2
SATB homeobox 2
chr5_+_140772691 0.209 NM_018913
NM_032090
PCDHGA10

protocadherin gamma subfamily A, 10

chr1_+_242283129 0.208 NM_006352
ZNF238
zinc finger protein 238
chr2_-_199922047 0.206 SATB2
SATB homeobox 2
chr1_-_209373937 0.205 NM_002238
NM_172362
KCNH1

potassium voltage-gated channel, subfamily H (eag-related), member 1

chr13_-_98708549 0.202 NM_001098200
NM_005292
GPR18

G protein-coupled receptor 18

chr13_+_47948586 0.202 RB1
retinoblastoma 1
chr14_+_74968589 0.201 NM_001135049
JDP2
Jun dimerization protein 2
chr4_-_176970407 0.201 GPM6A
glycoprotein M6A
chr3_+_195688974 0.201 FLJ34208
hypothetical LOC401106
chr3_+_120799411 0.200 NM_015900
PLA1A
phospholipase A1 member A
chr17_+_35038276 0.200 NM_181505
PPP1R1B
protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr14_+_28311740 0.197 C14orf23
chromosome 14 open reading frame 23
chr15_+_22832198 0.197 SNRPN
small nuclear ribonucleoprotein polypeptide N
chr2_-_206790871 0.197 NM_001098199
NM_005279
GPR1

G protein-coupled receptor 1

chr12_-_25041639 0.196 NM_001101339
C12orf77
chromosome 12 open reading frame 77
chr18_+_28023984 0.195 NM_005925
MEP1B
meprin A, beta
chr22_+_42726423 0.195 NM_001003828
PARVB
parvin, beta
chr3_+_123385219 0.194 NM_000388
CASR
calcium-sensing receptor
chr6_+_129245978 0.191 NM_000426
NM_001079823
LAMA2

laminin, alpha 2

chr2_+_165804157 0.190 NM_001040142
SCN2A
sodium channel, voltage-gated, type II, alpha subunit
chr8_-_7710547 0.188 NM_001037668
NM_001040705
DEFB107A
DEFB107B
defensin, beta 107A
defensin, beta 107B
chr19_+_60962318 0.188 NM_001145014
RFPL4A
ret finger protein-like 4A
chr12_+_15590811 0.188 PTPRO
protein tyrosine phosphatase, receptor type, O
chr6_-_32265489 0.187 NM_002586
PBX2
pre-B-cell leukemia homeobox 2
chr12_-_7547552 0.185 NM_004244
NM_203416
CD163

CD163 molecule

chr9_-_94338072 0.184 NM_001197295
NM_001197296
NM_001393
ECM2


extracellular matrix protein 2, female organ and adipocyte specific


chr8_-_110762409 0.182 NM_001099745
NM_001099746
SYBU

syntabulin (syntaxin-interacting)

chr5_+_166644420 0.181 NM_001122679
ODZ2
odz, odd Oz/ten-m homolog 2 (Drosophila)
chr9_+_4829763 0.181 RCL1
RNA terminal phosphate cyclase-like 1
chr10_-_48426868 0.180 NM_001042357
NM_001042389
PTPN20B
PTPN20A
protein tyrosine phosphatase, non-receptor type 20B
protein tyrosine phosphatase, non-receptor type 20A
chrX_+_37524190 0.179 NM_000397
CYBB
cytochrome b-245, beta polypeptide
chr3_+_179759181 0.177 NM_005832
KCNMB2
potassium large conductance calcium-activated channel, subfamily M, beta member 2
chr4_-_87593306 0.175 NM_002753
MAPK10
mitogen-activated protein kinase 10
chr1_+_196874867 0.175 PTPRC
protein tyrosine phosphatase, receptor type, C
chr4_+_78172966 0.174 SEPT11
septin 11
chr10_+_91142301 0.174 NM_001548
IFIT1
interferon-induced protein with tetratricopeptide repeats 1
chr11_-_102081654 0.174 NM_022122
MMP27
matrix metallopeptidase 27
chrX_+_90976314 0.172 NM_014522
NM_032968
NM_032969
PCDH11X


protocadherin 11 X-linked


chr18_+_59733724 0.172 NM_005024
SERPINB10
serpin peptidase inhibitor, clade B (ovalbumin), member 10
chr9_-_16717887 0.171 BNC2
basonuclin 2
chr13_-_22905822 0.169 NM_014363
SACS
spastic ataxia of Charlevoix-Saguenay (sacsin)
chr8_-_86441115 0.166 NM_001164830
CA1
carbonic anhydrase I
chr5_-_95184121 0.165 GLRX
glutaredoxin (thioltransferase)
chrX_-_76824726 0.164 ATRX
alpha thalassemia/mental retardation syndrome X-linked
chrX_-_15242589 0.164 NM_001012428
ASB11
ankyrin repeat and SOCS box containing 11
chr12_-_9651748 0.163 NM_002258
KLRB1
killer cell lectin-like receptor subfamily B, member 1
chrX_-_102418329 0.163 NM_001012979
TCEAL5
transcription elongation factor A (SII)-like 5
chr5_+_60969392 0.162 NM_173667
FLJ37543
hypothetical protein FLJ37543
chr10_-_73953699 0.162 NM_001195519
CBARA1
calcium binding atopy-related autoantigen 1
chr20_+_16676997 0.161 NM_020157
OTOR
otoraplin
chr7_-_122126422 0.161 NM_139175
RNF133
ring finger protein 133
chr6_+_12825022 0.161 PHACTR1
phosphatase and actin regulator 1
chr6_+_114285209 0.160 NM_002356
MARCKS
myristoylated alanine-rich protein kinase C substrate
chr11_-_71202538 0.158 LOC285407
asparagine-linked glycosylation 1 homolog pseudogene
chr3_-_158695832 0.158 NM_001167917
VEPH1
ventricular zone expressed PH domain homolog 1 (zebrafish)
chr4_-_120462705 0.158 NM_000134
FABP2
fatty acid binding protein 2, intestinal
chr14_+_100365390 0.158 MEG3
maternally expressed 3 (non-protein coding)
chrX_+_37524250 0.157 CYBB
cytochrome b-245, beta polypeptide
chr5_-_124108672 0.157 NM_020747
ZNF608
zinc finger protein 608
chr2_-_32344192 0.157 NM_021209
NLRC4
NLR family, CARD domain containing 4
chr11_+_26310253 0.156 NM_031418
ANO3
anoctamin 3
chr12_-_55979413 0.156


chr3_+_99334230 0.156 NM_001005338
OR5H1
olfactory receptor, family 5, subfamily H, member 1
chr4_-_23500706 0.154 NM_013261
PPARGC1A
peroxisome proliferator-activated receptor gamma, coactivator 1 alpha
chr1_+_115373937 0.154 NM_000549
TSHB
thyroid stimulating hormone, beta
chrX_-_110542040 0.154 NM_178151
NM_001195553
NM_178152
NM_178153
DCX



doublecortin



chr5_-_58918031 0.153 NM_006203
PDE4D
phosphodiesterase 4D, cAMP-specific
chr4_+_176076083 0.153 NM_001130703
NM_001130704
NM_001130705
NM_014269
ADAM29



ADAM metallopeptidase domain 29



chr16_-_3567354 0.152 NM_178844
NLRC3
NLR family, CARD domain containing 3
chr12_-_101398429 0.152 IGF1
insulin-like growth factor 1 (somatomedin C)
chr5_+_140207540 0.152 NM_014005
NM_031857
PCDHA9

protocadherin alpha 9

chr3_-_99236520 0.151 NM_001105580
GABRR3
gamma-aminobutyric acid (GABA) receptor, rho 3
chr1_-_149681265 0.151 NM_207171
POGZ
pogo transposable element with ZNF domain
chr3_+_152934393 0.150 NM_207365
AADACL2
arylacetamide deacetylase-like 2
chr5_+_38481392 0.149 NM_182801
EGFLAM
EGF-like, fibronectin type III and laminin G domains
chr2_-_65013070 0.148 LOC400958
hypothetical LOC400958
chr17_+_25292748 0.148 NM_198529
EFCAB5
EF-hand calcium binding domain 5
chrX_+_115215985 0.148 NM_000686
AGTR2
angiotensin II receptor, type 2
chr8_-_82536312 0.146 NM_001080526
FABP9
fatty acid binding protein 9, testis
chr3_+_73193499 0.146 NM_018029
EBLN2
endogenous Borna-like N element-2
chr4_+_119174947 0.146 NM_004784
NDST3
N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3
chr3_-_25654659 0.144 TOP2B
topoisomerase (DNA) II beta 180kDa
chr12_-_10870134 0.144 NM_023921
TAS2R10
taste receptor, type 2, member 10
chr3_+_16191159 0.143 NM_054110
GALNTL2
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 2
chr7_+_137795387 0.143 NM_003852
NM_015905
TRIM24

tripartite motif containing 24

chr1_+_166516901 0.141 NM_005149
TBX19
T-box 19
chr17_-_7159094 0.141 NM_004489
GPS2
G protein pathway suppressor 2
chr2_+_161981138 0.141 TBR1
T-box, brain, 1
chr7_-_126670804 0.140 NM_000845
GRM8
glutamate receptor, metabotropic 8
chr14_+_61532293 0.139 NM_031914
SYT16
synaptotagmin XVI
chr6_-_22405708 0.139 NM_000948
PRL
prolactin
chr1_+_196874759 0.138 NM_002838
NM_080921
NM_080923
PTPRC


protein tyrosine phosphatase, receptor type, C


chr4_-_185921384 0.137 ACSL1
acyl-CoA synthetase long-chain family member 1
chr3_-_64186151 0.137 NM_198859
PRICKLE2
prickle homolog 2 (Drosophila)
chr6_+_132915522 0.137 NM_053278
TAAR8
trace amine associated receptor 8
chr14_+_19598043 0.136 NM_001004717
OR4L1
olfactory receptor, family 4, subfamily L, member 1
chr1_-_230717850 0.136 NM_020808
SIPA1L2
signal-induced proliferation-associated 1 like 2
chr4_+_123311207 0.136 NM_015312
KIAA1109
KIAA1109
chr7_+_102340579 0.136 NM_001031692
NM_005824
LRRC17

leucine rich repeat containing 17

chr8_+_67201684 0.135 NM_033058
NM_184085
NM_184086
NM_184087
TRIM55



tripartite motif containing 55



chr6_+_155579788 0.134 NM_001010927
TIAM2
T-cell lymphoma invasion and metastasis 2
chr11_-_58099884 0.133 NM_004811
LPXN
leupaxin
chr6_+_50789215 0.133 NM_172238
TFAP2D
transcription factor AP-2 delta (activating enhancer binding protein 2 delta)
chr3_-_21767819 0.132 NM_024697
ZNF385D
zinc finger protein 385D
chr1_-_92725017 0.131 NM_005263
GFI1
growth factor independent 1 transcription repressor
chr10_+_21924265 0.131 MLLT10
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10

Gene Ontology Analysis

Gene overrepresentation in process category:

enrichment   p-value GO term description
1.81 4.91e-11 GO:0003008 system process
2.77 3.13e-10 GO:0007608 sensory perception of smell
2.59 1.79e-09 GO:0007606 sensory perception of chemical stimulus
1.35 8.36e-09 GO:0032501 multicellular organismal process
1.77 1.83e-07 GO:0050877 neurological system process
1.97 1.80e-06 GO:0007600 sensory perception
1.27 3.32e-06 GO:0050896 response to stimulus
1.95 2.08e-03 GO:0007186 G-protein coupled receptor protein signaling pathway
1.69 1.64e-02 GO:0006952 defense response

Gene overrepresentation in compartment category:

enrichment   p-value GO term description
1.47 3.16e-13 GO:0071944 cell periphery
1.47 3.73e-13 GO:0005886 plasma membrane
1.53 1.42e-06 GO:0005576 extracellular region
1.25 7.30e-05 GO:0016021 integral to membrane
1.24 1.07e-04 GO:0031224 intrinsic to membrane
1.20 6.79e-04 GO:0044425 membrane part
1.15 4.59e-03 GO:0016020 membrane
1.34 1.96e-02 GO:0044459 plasma membrane part
1.97 3.05e-02 GO:0005578 proteinaceous extracellular matrix

Gene overrepresentation in function category:

enrichment   p-value GO term description
2.49 2.87e-17 GO:0004930 G-protein coupled receptor activity
2.06 1.41e-14 GO:0004888 transmembrane receptor activity
1.85 2.52e-13 GO:0004872 receptor activity
2.90 8.10e-12 GO:0004984 olfactory receptor activity
1.68 6.02e-11 GO:0004871 signal transducer activity
1.68 6.02e-11 GO:0060089 molecular transducer activity
6.18 3.41e-03 GO:0001608 nucleotide receptor activity, G-protein coupled
6.18 3.41e-03 GO:0045028 purinergic nucleotide receptor activity, G-protein coupled
4.83 3.23e-02 GO:0001614 purinergic nucleotide receptor activity
4.83 3.23e-02 GO:0016502 nucleotide receptor activity